Chaperonin ID: | b14086 |
Chaperonin Group: | I |
Deposit Date: | 2009-05-24 |
Type: | cli |
Type strain?: | no |
Genus: | Vibrio |
Species: | cholerae |
Strain: | MJ-1236 |
Lineage: | root; cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio |
Original ID: | - |
CUTC ID: | - |
Nucleotide Genbank Accession: | NC_012667 |
Peptide Genbank Accession: | YP_002876262 |
Best FASTA Match: | b19911 Vibrio cholerae HC-48B2 (see fasta results) |
Date of FASTA search: | 2024-04-29 |
FASTA identity %: | 100.000 |
Best BLASTP Match: | b24078 Vibrio cholerae O1 str. 116059 (see blastp results) |
Date of BLASTP search: | 2024-04-29 |
BLASTP identity %: | 100.000 |
Source: | Genbank |
Notes: | Chromosome 2. Vibrio cholerae MJ-1236 is a toxigenic O1 El Tor Inaba strain from Matlab, Bangladesh, 1994 that represents the "Matlab variant" of El Tor. |
Full Nucleotide Sequence: BLAST this sequence: cpnDB | |
ATGGCAGCAAAACACGTTCTGTTTTCAACCGACGCCAGACAGAAAATGCTTAGTGGCGTA AATTTACTGGCCAACGCCGTCAAAGTTACGCTCGGGCCCAAAGGTCGCCATGTTGTGCTC AATAAATCTTATGGTGCGCCAACCATCACTAAAGATGGCGTCTCTGTCGCCAAAGAGATT GAGCTCGCCGATAAATTCGAAAACATGGGCGCACAAATGCTCAAACAAGTGGCGTCCAAA GCCAACGACGAAGCGGGCGATGGCACTACCACAGCAACCGTGTTGGCCCAAGCGCTGATC AATGAAGGGATGAAGGCGGTCGCCGCTGGCATGAACCCCATGGATCTTAAGCGCGGTATC GACAAAGCAGTCTCCGCAGCGGTCGAGAAATTGCACCAACTGGCCAAACCTTGCAGTGAC ACCCAATCGATCACTCAAGTCGGTGCCATTTCCGCTAATAGCGATCACGCGATCGGTGAA ATCATCGCGCAAGCGATGGAGAAAGTTGGCCGCAATGGTGTGATCACGGTTGAAGAGGGA CAAGCTCTACAAAACGAGCTTTCGGTGGTTGAAGGTATGCAATTTGATCGCGGTTACCTT TCCCCTTACTTCATCAACCAACCCAAAGCGGGCTGTGTTGAGTTGGAGAATCCCTACGTC TTGCTAGTAGACAAGAAAATCAGCCACATTCGTGAACTGCTACCGATTTTAGAATCCGTG GCTAAAGCTTCCCGTTCGCTGCTGATCATTGCTGAAGATGTGGATGGCGATGCGCTTGCG ACATTAGTGGTTAACAGCATGCGTGGCATCATTAAAGTGGCAGCGGTGAAAGCGCCAGGC TTTGGTGAACAGCGCAAAGCAATGCTCGAGGACATCGCGGCCCTCACTGCTGGCCGAGTG ATTAGCGAGGAAATAGGTCTTGAGCTTGAAAAAGTGACGCTGGACGATCTGGGTAGCGCG AAAAAAGTCACCATCAATAAAGACAATACCACGATTGTCGATGGCGCTGCCGAGCCAAGT GCCCTCCAAGATCGCATCGCGCAGATCCAACATCAATTGGAACACACCACATCGCAATAC GATCGGGACAAATTGCAGCAACGCATTGCCAAACTCTCTGGTGGGGTTGCTGTGATCAAG ATTGGTGCGGCAACAGAAGTGGAGATGAAAGAGAAAAAAGATCGCGTGGATGATGCATTG CACGCCACTCGCGCCGCAGTGGAAGAAGGGATTGTGGCCGGCGGTGGTGTCGCTCTGCTG AAAATTGCCAACGAGCTCAGCAATTTACAAGGTGATAATGACGATCAAAATGTCGGCATT CGCATTGCGCTAAGAGCGATGGAAGAACCACTGCGTCAAATCGCCATCAACGCAGGGGAT GAAGCTTCAGTGATCGCAAATCAAGTCAAAACGGGCGATGAGCATTACGGCTACAACGCT GCCACCGGCCAATTTGGCAATATGTTAGAGATGGGCATTTTGGATCCTGCGAAGGTGACA CGCTCAGCGCTACAGTTTGCCGCAAGCATTGCTGGCTTGATGATCACCACCGAAGCCATG GTCAGCGAAGTAGACAAAGAGTCTGCGGCGTAA |
Full Peptide Sequence: BLAST this sequence: cpnDB | |
MAAKHVLFSTDARQKMLSGVNLLANAVKVTLGPKGRHVVLNKSYGAPTITKDGVSVAKEI ELADKFENMGAQMLKQVASKANDEAGDGTTTATVLAQALINEGMKAVAAGMNPMDLKRGI DKAVSAAVEKLHQLAKPCSDTQSITQVGAISANSDHAIGEIIAQAMEKVGRNGVITVEEG QALQNELSVVEGMQFDRGYLSPYFINQPKAGCVELENPYVLLVDKKISHIRELLPILESV AKASRSLLIIAEDVDGDALATLVVNSMRGIIKVAAVKAPGFGEQRKAMLEDIAALTAGRV ISEEIGLELEKVTLDDLGSAKKVTINKDNTTIVDGAAEPSALQDRIAQIQHQLEHTTSQY DRDKLQQRIAKLSGGVAVIKIGAATEVEMKEKKDRVDDALHATRAAVEEGIVAGGGVALL KIANELSNLQGDNDDQNVGIRIALRAMEEPLRQIAINAGDEASVIANQVKTGDEHYGYNA ATGQFGNMLEMGILDPAKVTRSALQFAASIAGLMITTEAMVSEVDKESAA |
Nucleotide UT Sequence: BLAST this sequence: cpnDB | |
GCAACCGTGTTGGCCCAAGCGCTGATCAATGAAGGGATGAAGGCGGTCGCCGCTGGCATG AACCCCATGGATCTTAAGCGCGGTATCGACAAAGCAGTCTCCGCAGCGGTCGAGAAATTG CACCAACTGGCCAAACCTTGCAGTGACACCCAATCGATCACTCAAGTCGGTGCCATTTCC GCTAATAGCGATCACGCGATCGGTGAAATCATCGCGCAAGCGATGGAGAAAGTTGGCCGC AATGGTGTGATCACGGTTGAAGAGGGACAAGCTCTACAAAACGAGCTTTCGGTGGTTGAA GGTATGCAATTTGATCGCGGTTACCTTTCCCCTTACTTCATCAACCAACCCAAAGCGGGC TGTGTTGAGTTGGAGAATCCCTACGTCTTGCTAGTAGACAAGAAAATCAGCCACATTCGT GAACTGCTACCGATTTTAGAATCCGTGGCTAAAGCTTCCCGTTCGCTGCTGATCATTGCT GAAGATGTGGATGGCGATGCGCTTGCGACATTAGTGGTTAACAGCATGCGTGGCATCATT AAAGTGGCAGCGGTG |
Peptide UT Sequence: BLAST this sequence: cpnDB | |
ATVLAQALINEGMKAVAAGMNPMDLKRGIDKAVSAAVEKLHQLAKPCSDTQSITQVGAIS ANSDHAIGEIIAQAMEKVGRNGVITVEEGQALQNELSVVEGMQFDRGYLSPYFINQPKAG CVELENPYVLLVDKKISHIRELLPILESVAKASRSLLIIAEDVDGDALATLVVNSMRGII KVAAV |