Chaperonin ID: | b21959 |
Chaperonin Group: | I |
Deposit Date: | 2012-12-09 |
Type: | ref |
Type strain?: | no |
Genus: | Brachyspira |
Species: | hampsonii |
Strain: | 30446 |
Lineage: | root; cellular organisms; Bacteria; Spirochaetes; Spirochaetia; Spirochaetales; Brachyspiraceae; Brachyspira |
Original ID: | IDAC 16111-01 |
CUTC ID: | - |
Nucleotide Genbank Accession: | ALNZ01000029 |
Peptide Genbank Accession: | EKV56554 |
Best FASTA Match: | - |
Date of FASTA search: | - |
FASTA identity %: | - |
Best BLASTP Match: | - |
Date of BLASTP search: | - |
BLASTP identity %: | - |
Source: | Genbank |
Notes: | Isolated from a pig with mucohaemorrhagic diarrhea. Isolate belongs to 'clade II' or 'bv II' of B. hampsonii |
Full Nucleotide Sequence: BLAST this sequence: cpnDB | |
ATGGCAGCAAAACAGCTATTATTTGATGAAGAAGCTAGAAGAGCCCTCATGCGTGGGGTT GATGCTTTAGCTAATGCCGTAAAGGTAACTTTAGGACCGCGCGGAAGAAATGTTGTAATA GACAAAAAATTCGGTCCTCCTACTATAATAAATGATGGTGTAACTATCGCTAAAGAAATA GAATTGGAAGATCCATTTGAAAATATGGGTGCTCAAATAGTTAAAGAAGTTTCTACTAAA ACTAATGATGTTGCAGGCGACGGTACAACTACTGCTACTGTTTTAGCTCAGGCTATGGTT AAAGAAGGTTTGAAAAATGTAACTAGCGGTGCTAATCCTATGCTTATTAAAAGAGGTATA GAAAAAGCTGTTAGCGAAATAGTTGCTTATATCAAATCTGAAGCTAAACAAATTAAAGGC AAAGAAGAAATTGCTCAGGTTGCTACTATTTCTGCTAACAATGATAAAGAAATTGGTGCT TTAATCAGTGATGCTATGGAAAAAGTTGGTAAAGAAGGCGTTATCACTGTAGAAGAAGCT AAATCTTTAGAAACTAGTCTTTCTTTGGTAGAAGGTATGCAGTTTGACAGAGGTTATATC TCTCCATATTTCGTAACTAACGGAGATAGTATGACTGCTGAATTAGAAGATGCTTTACTT CTTATCTATGATAAAAAAATCTCTAACATGAAAGAACTTCTTCCTATACTTGAAAAAATT GCTCAGACTGGAAGACCTTTCATTATTATCGCTGAAGATATTGAAAATGAAGCTTTGGCT ACTTTGGTACTTAACAAAATGAGAGGAGTATTAAATGTATGTGCTGTTAAAGCTCCTGGT TTTGGCGACAGAAGAAAAGCTATGCTTGAAGATATAGCTATTTTAACAGGCGGACAAGTT ATCAGCGAAGATTTAGGTATGAAACTTGAAAATGCTTCTGTTGAACAGCTTGGTAAAGCT AAAAAAATCACTGTAGATAAAGAAAATACTACTATAGTTGAAGGTGCTGGAAGCAAAGAA GATGTAAAAGCTAGAGTTGCTGCTATTAAAAAACAAATAGAAGAAACTGACAGCGATTAT GACAGAGAAAAATTACAAGAAAGACTTGCTAAACTTTCAGGCGGTGTTGCTGTTATCAAT ATAGGGGCAGCTACTGAAGTAGAAATGAAAGAGAAAAAAGCTAGAGTAGAAGATGCTTTA TCTGCAACTCGTGCTGCTGTTGAAGAAGGAGTAATTCCTGGCGGCGGTATTACTTACTTA CATGCTCAGCATAAATTAGAATCTTTAACTTTAGAAAATCCTGATGAACAAGTTGGAGTT AATATAGTAAAAAGAGCTATAGAAGAGCCTATAAGAATGATAGCTACAAATGCTGGTTTA GACGGTTCTGTTGTTGCTATTGAAGCTAAAAAACAAAAAGGCAATATGGGTTTCAATGCT CTTACTAATGAATGGGTTGATATGCTTAAAGCTGGTATTATTGATCCTGCTAAAGTTTCT AGAAGTGCTTTACAAAATGCTGCTTCTATTGCTAGTCAAGTATTAACTGCTGAAGTTATT ATTACTGATATACCAGAACCTGAAAAACCAATGCCTCCAATGCCTGGCGGCGGAATGGGC GGTATGTATTAA |
Full Peptide Sequence: BLAST this sequence: cpnDB | |
MAAKQLLFDEEARRALMRGVDALANAVKVTLGPRGRNVVIDKKFGPPTIINDGVTIAKEI ELEDPFENMGAQIVKEVSTKTNDVAGDGTTTATVLAQAMVKEGLKNVTSGANPMLIKRGI EKAVSEIVAYIKSEAKQIKGKEEIAQVATISANNDKEIGALISDAMEKVGKEGVITVEEA KSLETSLSLVEGMQFDRGYISPYFVTNGDSMTAELEDALLLIYDKKISNMKELLPILEKI AQTGRPFIIIAEDIENEALATLVLNKMRGVLNVCAVKAPGFGDRRKAMLEDIAILTGGQV ISEDLGMKLENASVEQLGKAKKITVDKENTTIVEGAGSKEDVKARVAAIKKQIEETDSDY DREKLQERLAKLSGGVAVINIGAATEVEMKEKKARVEDALSATRAAVEEGVIPGGGITYL HAQHKLESLTLENPDEQVGVNIVKRAIEEPIRMIATNAGLDGSVVAIEAKKQKGNMGFNA LTNEWVDMLKAGIIDPAKVSRSALQNAASIASQVLTAEVIITDIPEPEKPMPPMPGGGMG GMY |
Nucleotide UT Sequence: BLAST this sequence: cpnDB | |
GCTACTGTTTTAGCTCAGGCTATGGTTAAAGAAGGTTTGAAAAATGTAACTAGCGGTGCT AATCCTATGCTTATTAAAAGAGGTATAGAAAAAGCTGTTAGCGAAATAGTTGCTTATATC AAATCTGAAGCTAAACAAATTAAAGGCAAAGAAGAAATTGCTCAGGTTGCTACTATTTCT GCTAACAATGATAAAGAAATTGGTGCTTTAATCAGTGATGCTATGGAAAAAGTTGGTAAA GAAGGCGTTATCACTGTAGAAGAAGCTAAATCTTTAGAAACTAGTCTTTCTTTGGTAGAA GGTATGCAGTTTGACAGAGGTTATATCTCTCCATATTTCGTAACTAACGGAGATAGTATG ACTGCTGAATTAGAAGATGCTTTACTTCTTATCTATGATAAAAAAATCTCTAACATGAAA GAACTTCTTCCTATACTTGAAAAAATTGCTCAGACTGGAAGACCTTTCATTATTATCGCT GAAGATATTGAAAATGAAGCTTTGGCTACTTTGGTACTTAACAAAATGAGAGGAGTATTA AATGTATGTGCTGTT |
Peptide UT Sequence: BLAST this sequence: cpnDB | |
ATVLAQAMVKEGLKNVTSGANPMLIKRGIEKAVSEIVAYIKSEAKQIKGKEEIAQVATIS ANNDKEIGALISDAMEKVGKEGVITVEEAKSLETSLSLVEGMQFDRGYISPYFVTNGDSM TAELEDALLLIYDKKISNMKELLPILEKIAQTGRPFIIIAEDIENEALATLVLNKMRGVL NVCAV |