RECORD DETAILS
Add Record To Cart - Printer-friendly version - Close Window| Chaperonin ID: | b21959 |
| Chaperonin Group: | I |
| Deposit Date: | 2012-12-09 |
| Type: | ref |
| Type strain?: | no |
| Genus: | Brachyspira |
| Species: | hampsonii |
| Strain: | 30446 |
| Lineage: | root; cellular organisms; Bacteria; Spirochaetes; Spirochaetia; Spirochaetales; Brachyspiraceae; Brachyspira |
| Original ID: | IDAC 16111-01 |
| CUTC ID: | - |
| Nucleotide Genbank Accession: | ALNZ01000029 |
| Peptide Genbank Accession: | EKV56554 |
| Best FASTA Match: | - |
| Date of FASTA search: | - |
| FASTA identity %: | - |
| Best BLASTP Match: | - |
| Date of BLASTP search: | - |
| BLASTP identity %: | - |
| Source: | Genbank |
| Notes: | Isolated from a pig with mucohaemorrhagic diarrhea. Isolate belongs to 'clade II' or 'bv II' of B. hampsonii |
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Full Nucleotide Sequence: BLAST this sequence: cpnDB | |
ATGGCAGCAAAACAGCTATTATTTGATGAAGAAGCTAGAAGAGCCCTCATGCGTGGGGTT GATGCTTTAGCTAATGCCGTAAAGGTAACTTTAGGACCGCGCGGAAGAAATGTTGTAATA GACAAAAAATTCGGTCCTCCTACTATAATAAATGATGGTGTAACTATCGCTAAAGAAATA GAATTGGAAGATCCATTTGAAAATATGGGTGCTCAAATAGTTAAAGAAGTTTCTACTAAA ACTAATGATGTTGCAGGCGACGGTACAACTACTGCTACTGTTTTAGCTCAGGCTATGGTT AAAGAAGGTTTGAAAAATGTAACTAGCGGTGCTAATCCTATGCTTATTAAAAGAGGTATA GAAAAAGCTGTTAGCGAAATAGTTGCTTATATCAAATCTGAAGCTAAACAAATTAAAGGC AAAGAAGAAATTGCTCAGGTTGCTACTATTTCTGCTAACAATGATAAAGAAATTGGTGCT TTAATCAGTGATGCTATGGAAAAAGTTGGTAAAGAAGGCGTTATCACTGTAGAAGAAGCT AAATCTTTAGAAACTAGTCTTTCTTTGGTAGAAGGTATGCAGTTTGACAGAGGTTATATC TCTCCATATTTCGTAACTAACGGAGATAGTATGACTGCTGAATTAGAAGATGCTTTACTT CTTATCTATGATAAAAAAATCTCTAACATGAAAGAACTTCTTCCTATACTTGAAAAAATT GCTCAGACTGGAAGACCTTTCATTATTATCGCTGAAGATATTGAAAATGAAGCTTTGGCT ACTTTGGTACTTAACAAAATGAGAGGAGTATTAAATGTATGTGCTGTTAAAGCTCCTGGT TTTGGCGACAGAAGAAAAGCTATGCTTGAAGATATAGCTATTTTAACAGGCGGACAAGTT ATCAGCGAAGATTTAGGTATGAAACTTGAAAATGCTTCTGTTGAACAGCTTGGTAAAGCT AAAAAAATCACTGTAGATAAAGAAAATACTACTATAGTTGAAGGTGCTGGAAGCAAAGAA GATGTAAAAGCTAGAGTTGCTGCTATTAAAAAACAAATAGAAGAAACTGACAGCGATTAT GACAGAGAAAAATTACAAGAAAGACTTGCTAAACTTTCAGGCGGTGTTGCTGTTATCAAT ATAGGGGCAGCTACTGAAGTAGAAATGAAAGAGAAAAAAGCTAGAGTAGAAGATGCTTTA TCTGCAACTCGTGCTGCTGTTGAAGAAGGAGTAATTCCTGGCGGCGGTATTACTTACTTA CATGCTCAGCATAAATTAGAATCTTTAACTTTAGAAAATCCTGATGAACAAGTTGGAGTT AATATAGTAAAAAGAGCTATAGAAGAGCCTATAAGAATGATAGCTACAAATGCTGGTTTA GACGGTTCTGTTGTTGCTATTGAAGCTAAAAAACAAAAAGGCAATATGGGTTTCAATGCT CTTACTAATGAATGGGTTGATATGCTTAAAGCTGGTATTATTGATCCTGCTAAAGTTTCT AGAAGTGCTTTACAAAATGCTGCTTCTATTGCTAGTCAAGTATTAACTGCTGAAGTTATT ATTACTGATATACCAGAACCTGAAAAACCAATGCCTCCAATGCCTGGCGGCGGAATGGGC GGTATGTATTAA |
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Full Peptide Sequence: BLAST this sequence: cpnDB | |
MAAKQLLFDEEARRALMRGVDALANAVKVTLGPRGRNVVIDKKFGPPTIINDGVTIAKEI ELEDPFENMGAQIVKEVSTKTNDVAGDGTTTATVLAQAMVKEGLKNVTSGANPMLIKRGI EKAVSEIVAYIKSEAKQIKGKEEIAQVATISANNDKEIGALISDAMEKVGKEGVITVEEA KSLETSLSLVEGMQFDRGYISPYFVTNGDSMTAELEDALLLIYDKKISNMKELLPILEKI AQTGRPFIIIAEDIENEALATLVLNKMRGVLNVCAVKAPGFGDRRKAMLEDIAILTGGQV ISEDLGMKLENASVEQLGKAKKITVDKENTTIVEGAGSKEDVKARVAAIKKQIEETDSDY DREKLQERLAKLSGGVAVINIGAATEVEMKEKKARVEDALSATRAAVEEGVIPGGGITYL HAQHKLESLTLENPDEQVGVNIVKRAIEEPIRMIATNAGLDGSVVAIEAKKQKGNMGFNA LTNEWVDMLKAGIIDPAKVSRSALQNAASIASQVLTAEVIITDIPEPEKPMPPMPGGGMG GMY |
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Nucleotide UT Sequence: BLAST this sequence: cpnDB | |
GCTACTGTTTTAGCTCAGGCTATGGTTAAAGAAGGTTTGAAAAATGTAACTAGCGGTGCT AATCCTATGCTTATTAAAAGAGGTATAGAAAAAGCTGTTAGCGAAATAGTTGCTTATATC AAATCTGAAGCTAAACAAATTAAAGGCAAAGAAGAAATTGCTCAGGTTGCTACTATTTCT GCTAACAATGATAAAGAAATTGGTGCTTTAATCAGTGATGCTATGGAAAAAGTTGGTAAA GAAGGCGTTATCACTGTAGAAGAAGCTAAATCTTTAGAAACTAGTCTTTCTTTGGTAGAA GGTATGCAGTTTGACAGAGGTTATATCTCTCCATATTTCGTAACTAACGGAGATAGTATG ACTGCTGAATTAGAAGATGCTTTACTTCTTATCTATGATAAAAAAATCTCTAACATGAAA GAACTTCTTCCTATACTTGAAAAAATTGCTCAGACTGGAAGACCTTTCATTATTATCGCT GAAGATATTGAAAATGAAGCTTTGGCTACTTTGGTACTTAACAAAATGAGAGGAGTATTA AATGTATGTGCTGTT |
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Peptide UT Sequence: BLAST this sequence: cpnDB | |
ATVLAQAMVKEGLKNVTSGANPMLIKRGIEKAVSEIVAYIKSEAKQIKGKEEIAQVATIS ANNDKEIGALISDAMEKVGKEGVITVEEAKSLETSLSLVEGMQFDRGYISPYFVTNGDSM TAELEDALLLIYDKKISNMKELLPILEKIAQTGRPFIIIAEDIENEALATLVLNKMRGVL NVCAV |