RECORD DETAILS
Add Record To Cart - Printer-friendly version - Close Window| Chaperonin ID: | b17561 |
| Chaperonin Group: | I |
| Deposit Date: | 2010-08-03 |
| Type: | ref |
| Type strain?: | yes |
| Genus: | Bacteriovorax |
| Species: | marinus |
| Strain: | SJ |
| Lineage: | root; cellular organisms; Bacteria; Proteobacteria; Deltaproteobacteria; Bdellovibrionales; Bacteriovoracaceae; Bacteriovorax |
| Original ID: | ATCC BAA-682 |
| CUTC ID: | - |
| Nucleotide Genbank Accession: | FQ312005 |
| Peptide Genbank Accession: | CBW25209 |
| Best FASTA Match: | - |
| Date of FASTA search: | - |
| FASTA identity %: | - |
| Best BLASTP Match: | - |
| Date of BLASTP search: | - |
| BLASTP identity %: | - |
| Source: | Genbank |
| Notes: | Parasitizes other gram negative bacteria during its growth phase. It has a highly motile free-living extracelluar phase during which it seeks out new hosts. This species was reassigned from Bdellovibrio as the result of a 16s-based phylogenetic study. Type strain synonyms strain SJ = ATCC BAA-682 = DSM 15412. |
|
Full Nucleotide Sequence: BLAST this sequence: cpnDB | |
ATGGCAAAAGAATTAAAATATAGCGAAGACGCAAGATCACTTATCCTTAACGGAGTTAAT ACTTTAGCAAACGCAGTTAAAGTAACTCTTGGACCTAAAGGAAGAAATGTAGTTATCCAA AAATCATTTGGTGCTCCACACATTACTAAAGATGGTGTTTCTGTAGCTAAAGAAATTGAA ATTGAAAATAACTTTGAAAATATGGGCGCACAGATGGTTAAAGAAGTCGCTCAAAAGACT AATGAAGATGCAGGTGATGGAACGACGACAGCAACAGTTCTAGCTCAAGCGATCTATAGA GAAGGTGTAAAGCTTGTTACTGCTGGTCACAACCCAATGGATCTTAAGAGAGGAATTGAT ATTGCTGTTGAGAAAGTAGTTTCTAAACTTCAGGAAATGTCTAAAGAAGTTAAGACTTCT GAAGAGATTGCTCAGGTAGGAACAATTTCTGCAAACAATGACACTGAAATTGGAACACTT ATCTCTGAAGCAATGGCGAAAGTTGGTAATAACGGTGTTATCACAATTGAAGAGTCTAAG ACTGCTGAGACAACTCTTGATGTTGTTGAAGGTATGCAATTTGATAGAGGATACCTTTCT CCATACTTCGTAACTAATCCAGAAAAAATGGAAACTAACTTTGATTCACCAATGATTCTT ATTACTGATAAGAAAATTGCAAACATGAAAGAATTAGTTCCTGTTCTTGAAAAAGTTGTA CAAGCTTCTAAGCCACTTTTAATTATTGCTGAAGATGTTGAAGGTGAAGCCCTTACAACT CTAGTTGTTAATAAGTTAAGAGGAACTTTAAATGTTTGTGCGGTTAAAGCGCCAGGATTT GGAGATAGAAGAAAAGAAATGCTTAAAGATATTGCAATCCTAACTGGTGGTACTGTTATC TCTGAAGAGCTAGGTATGTCTCTTGAGTCTACAGAGCTTGAGCACTTAGGTTCTGCTAAG AAAGTTACTATTGATAAAGAAAACTCTACAATTGTTGACGGTGCAGGAGATAAAGATGCA GTTGATGCAAGAGTTGCAACGATTCAAAAGCAAGTAGAAGAGTCATCTTCTGACTATGAC AAAGAAAAACTTCAAGAAAGATTAGCTAAGCTTTCTGGTGGTGTTGCTGTAATTAACGTT GGCGCTCCAACTGAAACAGAAATGAAAGAAAAGAAAGATAGAGTAGAAGATGCTCTTAAC GCTACTAGAGCAGCAGTTGAAGAAGGAATTGTTGTTGGTGGTGGTTCAGCTCTAGTTCAC GCTTCTACAGTTCTTGATGGACTTGAAGGTGCAAATGCTGAAGAAACTTTTGGTATTAAA ATTGTTAAGAGAGCTGCAGAAGAGCCACTAAGACAAATCTCAGCAAACGCTGGGCTTGAA GGTTCTGTAGTTGTTAATGATGTAAAGAGAAAGGGTGATGTAACTTACGGTTTCAATGCG AGACTTGGTAAGTATGAAGATCTAGTTGCTGCAGGGATTATCGATCCTACAAAAGTAACA AGATCAGCTCTTCAAAATGCTGCATCTGTTTCAGGATTAATGCTTACGACTGAAACAATG ATCGCAGATCTTCCTAAGGAAGACGCCGCTCCTGCCGGAATGCCTGGTGGAATGGGTGGT ATGGGCGGAATGCCTGGCATGATGTAG |
|
Full Peptide Sequence: BLAST this sequence: cpnDB | |
MAKELKYSEDARSLILNGVNTLANAVKVTLGPKGRNVVIQKSFGAPHITKDGVSVAKEIE IENNFENMGAQMVKEVAQKTNEDAGDGTTTATVLAQAIYREGVKLVTAGHNPMDLKRGID IAVEKVVSKLQEMSKEVKTSEEIAQVGTISANNDTEIGTLISEAMAKVGNNGVITIEESK TAETTLDVVEGMQFDRGYLSPYFVTNPEKMETNFDSPMILITDKKIANMKELVPVLEKVV QASKPLLIIAEDVEGEALTTLVVNKLRGTLNVCAVKAPGFGDRRKEMLKDIAILTGGTVI SEELGMSLESTELEHLGSAKKVTIDKENSTIVDGAGDKDAVDARVATIQKQVEESSSDYD KEKLQERLAKLSGGVAVINVGAPTETEMKEKKDRVEDALNATRAAVEEGIVVGGGSALVH ASTVLDGLEGANAEETFGIKIVKRAAEEPLRQISANAGLEGSVVVNDVKRKGDVTYGFNA RLGKYEDLVAAGIIDPTKVTRSALQNAASVSGLMLTTETMIADLPKEDAAPAGMPGGMGG MGGMPGMM |
|
Nucleotide UT Sequence: BLAST this sequence: cpnDB | |
GCAACAGTTCTAGCTCAAGCGATCTATAGAGAAGGTGTAAAGCTTGTTACTGCTGGTCAC AACCCAATGGATCTTAAGAGAGGAATTGATATTGCTGTTGAGAAAGTAGTTTCTAAACTT CAGGAAATGTCTAAAGAAGTTAAGACTTCTGAAGAGATTGCTCAGGTAGGAACAATTTCT GCAAACAATGACACTGAAATTGGAACACTTATCTCTGAAGCAATGGCGAAAGTTGGTAAT AACGGTGTTATCACAATTGAAGAGTCTAAGACTGCTGAGACAACTCTTGATGTTGTTGAA GGTATGCAATTTGATAGAGGATACCTTTCTCCATACTTCGTAACTAATCCAGAAAAAATG GAAACTAACTTTGATTCACCAATGATTCTTATTACTGATAAGAAAATTGCAAACATGAAA GAATTAGTTCCTGTTCTTGAAAAAGTTGTACAAGCTTCTAAGCCACTTTTAATTATTGCT GAAGATGTTGAAGGTGAAGCCCTTACAACTCTAGTTGTTAATAAGTTAAGAGGAACTTTA AATGTTTGTGCGGTT |
|
Peptide UT Sequence: BLAST this sequence: cpnDB | |
ATVLAQAIYREGVKLVTAGHNPMDLKRGIDIAVEKVVSKLQEMSKEVKTSEEIAQVGTIS ANNDTEIGTLISEAMAKVGNNGVITIEESKTAETTLDVVEGMQFDRGYLSPYFVTNPEKM ETNFDSPMILITDKKIANMKELVPVLEKVVQASKPLLIIAEDVEGEALTTLVVNKLRGTL NVCAV |