/data/www/cpndb/fasta_results/b15878.fasta# /data/www/cpndb/fasta35 -E 200 -Q -m 6 -b 20 -d 20 -z 2 -H /data/www/cpndb/fasta_results/b15878 /data/www/cpndb/blastDBs/reference_ii_a_fn
<pre>
FASTA searches a protein or DNA sequence data bank
 version 35.03 Feb. 18, 2008
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

</pre>
Query: /data/www/cpndb/fasta_results/b15878
<pre>
  1>>>b15878 1629 nt - 1629 nt
Library: /data/www/cpndb/blastDBs/reference_ii_a_fn 4161612 residues in  2552 sequences

4161612 residues in  2552 sequences
Statistics: MLE_cen statistics: Lambda= 0.0028;  K=1.203e-06 (cen=127)
Algorithm: FASTA (3.5 Sept 2006) [optimized]
Parameters: +5/-4 matrix (5:-4) ktup: 6
 join: 65, opt: 50, open/ext: -12/-4, width:  16
 Scan time:  0.560
</pre>
<p>
<hr>
<p>
<p><pre>

The best scores are:                                      opt bits E(2552)
<a onClick="window.open('getRecord.php?id=b3672',
                                'cpndb_record'); return false;" href="getRecord.php?id=b3672" target=_"blank">b3672</a> NC_000909 Methanocaldococcus jannaschii  (1629) [f] 7299 48.7 1.4e-05 <A HREF="#b3672">align</A>
<a onClick="window.open('getRecord.php?id=b14367',
                                'cpndb_record'); return false;" href="getRecord.php?id=b14367" target=_"blank">b14367</a> NC_013156 Methanocaldococcus fervens AG (1629) [f] 7083 47.9 2.6e-05 <A HREF="#b14367">align</A>
<a onClick="window.open('getRecord.php?id=b14497',
                                'cpndb_record'); return false;" href="getRecord.php?id=b14497" target=_"blank">b14497</a> NC_013407 Methanocaldococcus vulcanius  (1629) [f] 6939 47.3 3.9e-05 <A HREF="#b14497">align</A>
<a onClick="window.open('getRecord.php?id=b26333',
                                'cpndb_record'); return false;" href="getRecord.php?id=b26333" target=_"blank">b26333</a> NZ_APMM01000004 Methanocaldococcus vill (1632) [f] 5988 43.5 0.00054 <A HREF="#b26333">align</A>
<a onClick="window.open('getRecord.php?id=b16606',
                                'cpndb_record'); return false;" href="getRecord.php?id=b16606" target=_"blank">b16606</a> CP002009 Methanocaldococcus infernus ME (1623) [f] 5988 43.5 0.00054 <A HREF="#b16606">align</A>
<a onClick="window.open('getRecord.php?id=b16885',
                                'cpndb_record'); return false;" href="getRecord.php?id=b16885" target=_"blank">b16885</a> CP002009 Methanocaldococcus infernus ME (1623) [f] 5961 43.4 0.00058 <A HREF="#b16885">align</A>
<a onClick="window.open('getRecord.php?id=b19214',
                                'cpndb_record'); return false;" href="getRecord.php?id=b19214" target=_"blank">b19214</a> NC_015562 Methanotorris igneus Kol 5    (1626) [f] 5457 41.4  0.0023 <A HREF="#b19214">align</A>
<a onClick="window.open('getRecord.php?id=b20398',
                                'cpndb_record'); return false;" href="getRecord.php?id=b20398" target=_"blank">b20398</a> AGJL01000021 Methanotorris formicicus M (1623) [f] 5333 40.9  0.0033 <A HREF="#b20398">align</A>
<a onClick="window.open('getRecord.php?id=b3733',
                                'cpndb_record'); return false;" href="getRecord.php?id=b3733" target=_"blank">b3733</a> E28070 Methanothermococcus thermolithotr (1635) [f] 4851 39.0   0.012 <A HREF="#b3733">align</A>
<a onClick="window.open('getRecord.php?id=b3649',
                                'cpndb_record'); return false;" href="getRecord.php?id=b3649" target=_"blank">b3649</a> AB015435 Methanothermococcus thermolitho (1635) [f] 4851 39.0   0.012 <A HREF="#b3649">align</A>
<a onClick="window.open('getRecord.php?id=b17709',
                                'cpndb_record'); return false;" href="getRecord.php?id=b17709" target=_"blank">b17709</a> CP002792 Methanothermococcus okinawensi (1638) [f] 4735 38.5   0.017 <A HREF="#b17709">align</A>
<a onClick="window.open('getRecord.php?id=b15782',
                                'cpndb_record'); return false;" href="getRecord.php?id=b15782" target=_"blank">b15782</a> CP000867 Methanococcus maripaludis C6   (1629) [f] 4447 37.4   0.038 <A HREF="#b15782">align</A>
<a onClick="window.open('getRecord.php?id=b3898',
                                'cpndb_record'); return false;" href="getRecord.php?id=b3898" target=_"blank">b3898</a> AY099402 Methanococcus maripaludis LL    (1632) [f] 4427 37.3    0.04 <A HREF="#b3898">align</A>
<a onClick="window.open('getRecord.php?id=b5023',
                                'cpndb_record'); return false;" href="getRecord.php?id=b5023" target=_"blank">b5023</a> NC_005791 Methanococcus maripaludis stra (1632) [f] 4427 37.3    0.04 <A HREF="#b5023">align</A>
<a onClick="window.open('getRecord.php?id=b10133',
                                'cpndb_record'); return false;" href="getRecord.php?id=b10133" target=_"blank">b10133</a> CP000745 Methanococcus maripaludis C7   (1629) [f] 4400 37.2   0.043 <A HREF="#b10133">align</A>
<a onClick="window.open('getRecord.php?id=b19322',
                                'cpndb_record'); return false;" href="getRecord.php?id=b19322" target=_"blank">b19322</a> CP002913 Methanococcus maripaludis X1   (1632) [f] 4400 37.2   0.043 <A HREF="#b19322">align</A>
<a onClick="window.open('getRecord.php?id=b10040',
                                'cpndb_record'); return false;" href="getRecord.php?id=b10040" target=_"blank">b10040</a> CP000742 Methanococcus vannielii SB     (1632) [f] 4396 37.2   0.044 <A HREF="#b10040">align</A>
<a onClick="window.open('getRecord.php?id=b9969',
                                'cpndb_record'); return false;" href="getRecord.php?id=b9969" target=_"blank">b9969</a> CP000609 Methanococcus maripaludis C5    (1638) [f] 4394 37.2   0.044 <A HREF="#b9969">align</A>
<a onClick="window.open('getRecord.php?id=b16538',
                                'cpndb_record'); return false;" href="getRecord.php?id=b16538" target=_"blank">b16538</a> NC_014222 Methanococcus voltae A3       (1644) [f] 4375 37.1   0.046 <A HREF="#b16538">align</A>
<a onClick="window.open('getRecord.php?id=b15789',
                                'cpndb_record'); return false;" href="getRecord.php?id=b15789" target=_"blank">b15789</a> CP000743 Methanococcus aeolicus Nankai- (1632) [f] 4348 37.0    0.05 <A HREF="#b15789">align</A>
</pre><p><hr><p>

>>>b15878, 1629 nt vs /data/www/cpndb/blastDBs/reference_ii_a_fn library

<A name=b3672>
<pre>
>><a onClick="window.open('getRecord.php?id=b3672',
                                'cpndb_record'); return false;" href="getRecord.php?id=b3672" target=_"blank">b3672</a> NC_000909 Methanocaldococcus jannaschii DSM 2661  (1629 nt)
 initn: 7245 init1: 7245 opt: 7299  Z-score: 193.6  bits: 48.7 E(): 1.4e-05
banded Smith-Waterman score: 7299; 94.3% identity (94.3% similar) in 1632 nt overlap (1-1629:1-1629)
<p>

               10        20        30        40        50        60
b15878 ATGGCAATGGCAGGAGCACCTATAGTAGTATTACCACAAAATGTTAAAAGATATGTTGGA
       :::::::::::::::::::: :::::::::::::::::::: ::::: ::::: ::::::
b3672  ATGGCAATGGCAGGAGCACCAATAGTAGTATTACCACAAAACGTTAAGAGATACGTTGGA
               10        20        30        40        50        60

               70        80        90       100       110       120
b15878 AGAGACGCTCAAAGAATGAACATCTTAGCAGGTAGAATTATCGCTGAGACAGTTAGAACA
       ::::: ::::::::::::::::::::::::::::::::::::::::: ::::::::::::
b3672  AGAGATGCTCAAAGAATGAACATCTTAGCAGGTAGAATTATCGCTGAAACAGTTAGAACA
               70        80        90       100       110       120

              130       140       150       160       170       180
b15878 ACATTAGGACCAAAAGGAATGGACAAAATGTTAGTTGATGAATTAGGAGATATAGTTGTT
       :::::::: :::::::::::::::::::::::::::::::: :::::::: :: ::::::
b3672  ACATTAGGTCCAAAAGGAATGGACAAAATGTTAGTTGATGAGTTAGGAGACATTGTTGTT
              130       140       150       160       170       180

              190       200       210       220       230       240
b15878 ACAAACGACGGGGTTACAATATTAAAAGAAATGAGTGTTGAGCACCCAGCTGCTAAGATG
       :::::::: :: ::::::::::::::::::::::::::::::::::::::::::::::::
b3672  ACAAACGATGGAGTTACAATATTAAAAGAAATGAGTGTTGAGCACCCAGCTGCTAAGATG
              190       200       210       220       230       240

              250       260       270       280       290       300
b15878 TTAATTGAAGTTGCTAAAACCCAAGAAAAAGAAGTTGGAGACGGTACAACAACAGCAGTC
       ::::: ::::::::::::::::::::::::::::::::::: :: :::::::::::::: 
b3672  TTAATAGAAGTTGCTAAAACCCAAGAAAAAGAAGTTGGAGATGGAACAACAACAGCAGTT
              250       260       270       280       290       300

              310       320       330       340       350       360
b15878 GTTATTGCTGGAGAGTTGTTAAGAAAAGCTGAAGAGTTGTTAGACCAAAACATCCACCCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b3672  GTTATTGCTGGAGAGTTGTTAAGAAAAGCTGAAGAGTTGTTAGACCAAAACATCCACCCA
              310       320       330       340       350       360

              370       380       390       400       410       420
b15878 TCAGTCATCATCAATGGATACGAGATGGCAAGAAATAAAGCAATTGAAGAGTTAAAGTCA
       :::::::::::::: :::::::: ::::::::::: :::::: ::::::: :::::::::
b3672  TCAGTCATCATCAACGGATACGAAATGGCAAGAAACAAAGCAGTTGAAGAATTAAAGTCA
              370       380       390       400       410       420

              430       440       450       460       470       480
b15878 GTTGCTAAAGAAGTTAAACCAGATGACACTGAAATGTTAAAGAAAATTGCAATGACATCA
        : :::::::::::::: ::::: ::::: :: :::::::::::::::::::::::::::
b3672  ATAGCTAAAGAAGTTAAGCCAGAAGACACAGAGATGTTAAAGAAAATTGCAATGACATCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b15878 ATTACTGGTAAAGGAGCAGAGAAAGCAAGAGAGCAGTTAGCTGAAATCGTCGTTGAGGCA
       :::::::::::::::::::::::::::::::: :::::::::::::: :: :::::::::
b3672  ATTACTGGTAAAGGAGCAGAGAAAGCAAGAGAACAGTTAGCTGAAATTGTTGTTGAGGCA
              490       500       510       520       530       540

              550       560       570       580       590       600
b15878 GTTAGAACAGTTGTTGATGAAGAAACTGGAAAAGTTGATAAGGACTTAATTAAAGTTGAG
       :::::: : :::::::::::::::::::::::::::::::::::::::::::::::::::
b3672  GTTAGAGCTGTTGTTGATGAAGAAACTGGAAAAGTTGATAAGGACTTAATTAAAGTTGAG
              550       560       570       580       590       600

              610       620       630       640       650       660
b15878 AAGAAGGAAGGAGCTCCAATTGAAGAAACAACCTTAATTAGAGGAGTTGTTATTGACAAA
       ::::: ::::::::::::::::::::::: :  :::::::::::::::::::::::::::
b3672  AAGAAAGAAGGAGCTCCAATTGAAGAAACCAAGTTAATTAGAGGAGTTGTTATTGACAAA
              610       620       630       640       650       660

              670       680       690       700       710       720
b15878 GAGAGAGTCAACCCACAAATGCCAAAGAAAGTTGAAAACGCTAAGATTGCATTGTTAAAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::
b3672  GAGAGAGTCAACCCACAAATGCCAAAGAAAGTTGAAAACGCTAAGATTGCATTATTAAAC
              670       680       690       700       710       720

              730       740       750       760       770       780
b15878 TGCCCAATTGAAGTCAAAGAAACAGAAACTGATGCAGAGATAAGAATTACTGACCCAGCT
       :::::::::::::::::::::::::: :: :::::::: :::::::::::::::::::::
b3672  TGCCCAATTGAAGTCAAAGAAACAGAGACAGATGCAGAAATAAGAATTACTGACCCAGCT
              730       740       750       760       770       780

              790       800       810       820       830       840
b15878 AAGTTAATGGAGTTCATTGAGCAAGAAGAGAAGATGATTAAAGACATGGTTGAGAAAATA
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::: :: 
b3672  AAGTTAATGGAGTTCATTGAGCAAGAAGAGAAGATGATTAAAGACATGGTTGAGAAGATT
              790       800       810       820       830       840

              850       860       870       880       890       900
b15878 GCTGCTACAGGAGCTAATGTTGTCTTCTGTCAAAAAGGAATTGATGACTTAGCTCAGCAC
       :::::::::::::: ::::: :: :::::::: :::::::::::::::::::::::::::
b3672  GCTGCTACAGGAGCAAATGTAGTATTCTGTCAGAAAGGAATTGATGACTTAGCTCAGCAC
              850       860       870       880       890       900

              910       920       930       940       950       960
b15878 TACTTAGCTAAGAAAGGAATCTTAGCAGTAAGAAGAGTTAAGAAGTCAGACATGGAGAAA
       :::::::::::::: :::::::::::::::::::::::::: :: ::::::::::: :::
b3672  TACTTAGCTAAGAAGGGAATCTTAGCAGTAAGAAGAGTTAAAAAATCAGACATGGAAAAA
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
b15878 TTAGCTAAAGCTACAGGAGCAAGAATAATAACAAAAATTGATGACTTAACACCAGAAGAC
       ::::::::::: ::::::::::::::  : ::::: ::::: :::::::::::::: :::
b3672  TTAGCTAAAGCAACAGGAGCAAGAATCGTTACAAAGATTGACGACTTAACACCAGAGGAC
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
b15878 CTTGGAGAAGCTGGATTAGTTGAAGAGAGAAAAGTTGCTGGAGATGCAATGATATTCGTT
        : :::::::::::::::::::::::::::::::::::::::::::::::::::::::: 
b3672  TTAGGAGAAGCTGGATTAGTTGAAGAGAGAAAAGTTGCTGGAGATGCAATGATATTCGTC
             1030      1040      1050      1060      1070      1080

             1090      1100      1110      1120      1130      1140
b15878 GAAGAGTGCAAGCATCCAAAGGCTGTAACAATCTTAGCAAGAGGTTCAACAGAGCACGTT
       ::  ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b3672  GAGCAGTGCAAGCATCCAAAGGCTGTAACAATCTTAGCAAGAGGTTCAACAGAGCACGTT
             1090      1100      1110      1120      1130      1140

             1150      1160      1170      1180      1190      1200
b15878 GTTGAAGAAGTTGCAAGAGCAATTGATGATGCAATTGGAGTTGTCAAGTGTGCATTAGAA
       :::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::
b3672  GTTGAAGAAGTTGCAAGAGCAATTGATGATGCAATTGGAGTTGTTAAGTGTGCATTAGAA
             1150      1160      1170      1180      1190      1200

             1210      1220      1230      1240      1250      1260
b15878 GAAGGTAAGATTGTTGCTGGTGGGGGAGCAACTGAGATAGAATTAGCTAAGAGATTAAGA
       ::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::
b3672  GAAGGTAAGATTGTTGCTGGTGGGGGAGCAACTGAAATAGAATTAGCTAAGAGATTAAGA
             1210      1220      1230      1240      1250      1260

             1270      1280      1290      1300      1310      1320
b15878 AAATTCGCTGAAACAGTTGCTGGAAGAGAGCAGTTAGCAGTTAAGGCATTCGCTGATGCT
       :::::::::::  :::::::::::::::: :::::::::::::: :::::::::::::::
b3672  AAATTCGCTGAGTCAGTTGCTGGAAGAGAACAGTTAGCAGTTAAAGCATTCGCTGATGCT
             1270      1280      1290      1300      1310      1320

             1330      1340      1350      1360      1370      1380
b15878 TTAGAAGTAATACCAAGAACATTAGCTGAGAACTCAGGATTAGACCCAATTGACATGCTC
       :::::::: :: ::::::::::::::::: ::::::::::::::::::::::::::::::
b3672  TTAGAAGTCATTCCAAGAACATTAGCTGAAAACTCAGGATTAGACCCAATTGACATGCTC
             1330      1340      1350      1360      1370      1380

             1390      1400      1410      1420      1430      1440
b15878 GTTAAGTTGAGAGCTGCTCACGAGAAAGAAGGCGGAGAAGTCTACGGATTAGACGTCTTC
       :::::::: ::::::::::::::::::::::::::::::::::: :::::::: ::::::
b3672  GTTAAGTTAAGAGCTGCTCACGAGAAAGAAGGCGGAGAAGTCTATGGATTAGATGTCTTC
             1390      1400      1410      1420      1430      1440

             1450      1460      1470      1480      1490      1500
b15878 GAAGGAGAAGTAGTTGATATGATGGAGAAAGGGGTTGTTGAACCATTGAAAGTCAAGACA
       ::::::::::: :: :::::: : :::::::: :::::::::::::::::::: :: :::
b3672  GAAGGAGAAGTTGTCGATATGTTAGAGAAAGGAGTTGTTGAACCATTGAAAGTTAAAACA
             1450      1460      1470      1480      1490      1500

             1510      1520      1530      1540      1550      1560
b15878 CAGGCAATTGACTCAGCTACAGAGGCATCAGTCATGCTCTTAAGAATCGATGACGTCATA
       :: :: ::::::::::::::::::::::::::::::::::::::::::::::::::::::
b3672  CAAGCTATTGACTCAGCTACAGAGGCATCAGTCATGCTCTTAAGAATCGATGACGTCATA
             1510      1520      1530      1540      1550      1560

             1570      1580         1590      1600      1610       
b15878 GCTGCTGAGAAAGTTAAAGAAGAC---AAGGGAGGAGAAGGAGGAGACATGGGAGGAGGT
       ::::::::::::::::::: ::::   :: :::::::::::::::::::::   ::::: 
b3672  GCTGCTGAGAAAGTTAAAGGAGACGAAAAAGGAGGAGAAGGAGGAGACATG---GGAGGG
             1570      1580      1590      1600      1610          

      1620         
b15878 GACGAATTTTAA
       :: :::::::::
b3672  GATGAATTTTAA
      1620         

</pre>
<hr>
<A name=b14367>
<pre>
>><a onClick="window.open('getRecord.php?id=b14367',
                                'cpndb_record'); return false;" href="getRecord.php?id=b14367" target=_"blank">b14367</a> NC_013156 Methanocaldococcus fervens AG86        (1629 nt)
 initn: 7038 init1: 7038 opt: 7083  Z-score: 188.9  bits: 47.9 E(): 2.6e-05
banded Smith-Waterman score: 7083; 92.8% identity (92.8% similar) in 1632 nt overlap (1-1629:1-1629)
<p>

               10        20        30        40        50        60
b15878 ATGGCAATGGCAGGAGCACCTATAGTAGTATTACCACAAAATGTTAAAAGATATGTTGGA
       ::::::::::::::  :::: :::::::: ::::::::::::::::: ::::: ::::::
b14367 ATGGCAATGGCAGGTACACCAATAGTAGTCTTACCACAAAATGTTAAGAGATACGTTGGA
               10        20        30        40        50        60

               70        80        90       100       110       120
b15878 AGAGACGCTCAAAGAATGAACATCTTAGCAGGTAGAATTATCGCTGAGACAGTTAGAACA
       ::::: ::::::::::::::::::::::::::::::::::::::::::::::: ::::::
b14367 AGAGATGCTCAAAGAATGAACATCTTAGCAGGTAGAATTATCGCTGAGACAGTCAGAACA
               70        80        90       100       110       120

              130       140       150       160       170       180
b15878 ACATTAGGACCAAAAGGAATGGACAAAATGTTAGTTGATGAATTAGGAGATATAGTTGTT
       :::::::: ::::::::::::::::::::::::::::::::::::::::: :: ::::::
b14367 ACATTAGGTCCAAAAGGAATGGACAAAATGTTAGTTGATGAATTAGGAGACATTGTTGTT
              130       140       150       160       170       180

              190       200       210       220       230       240
b15878 ACAAACGACGGGGTTACAATATTAAAAGAAATGAGTGTTGAGCACCCAGCTGCTAAGATG
       :::::::: ::::::::::::::::::::::::::::::::::: :: ::::::::::::
b14367 ACAAACGATGGGGTTACAATATTAAAAGAAATGAGTGTTGAGCATCCCGCTGCTAAGATG
              190       200       210       220       230       240

              250       260       270       280       290       300
b15878 TTAATTGAAGTTGCTAAAACCCAAGAAAAAGAAGTTGGAGACGGTACAACAACAGCAGTC
       ::::: :::::::::::::: ::::: ::::::::::: :::::::::::::::::::: 
b14367 TTAATAGAAGTTGCTAAAACTCAAGAGAAAGAAGTTGGGGACGGTACAACAACAGCAGTA
              250       260       270       280       290       300

              310       320       330       340       350       360
b15878 GTTATTGCTGGAGAGTTGTTAAGAAAAGCTGAAGAGTTGTTAGACCAAAACATCCACCCA
       :::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::
b14367 GTTATTGCTGGAGAGTTGTTAAGAAAAGCTGAAGAGTTGTTAGATCAAAACATCCACCCA
              310       320       330       340       350       360

              370       380       390       400       410       420
b15878 TCAGTCATCATCAATGGATACGAGATGGCAAGAAATAAAGCAATTGAAGAGTTAAAGTCA
       ::::: :: :: :: :: :::::  : :::::::: :: ::::::::::: :::::  ::
b14367 TCAGTTATAATTAACGGTTACGAATTAGCAAGAAACAAGGCAATTGAAGAATTAAAAACA
              370       380       390       400       410       420

              430       440       450       460       470       480
b15878 GTTGCTAAAGAAGTTAAACCAGATGACACTGAAATGTTAAAGAAAATTGCAATGACATCA
        : ::::::::: ::::::::::  : :: ::::::::::::::::::::::::::::::
b14367 ATAGCTAAAGAAATTAAACCAGAAAATACAGAAATGTTAAAGAAAATTGCAATGACATCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b15878 ATTACTGGTAAAGGAGCAGAGAAAGCAAGAGAGCAGTTAGCTGAAATCGTCGTTGAGGCA
       ::::: :::::::::::::::::::::::::: :::::::::::::: :: :::::::::
b14367 ATTACCGGTAAAGGAGCAGAGAAAGCAAGAGAACAGTTAGCTGAAATTGTTGTTGAGGCA
              490       500       510       520       530       540

              550       560       570       580       590       600
b15878 GTTAGAACAGTTGTTGATGAAGAAACTGGAAAAGTTGATAAGGACTTAATTAAAGTTGAG
       :::::: : ::::: :::::::::::::::::::::::::::::::::::::::::::::
b14367 GTTAGAGCTGTTGTCGATGAAGAAACTGGAAAAGTTGATAAGGACTTAATTAAAGTTGAG
              550       560       570       580       590       600

              610       620       630       640       650       660
b15878 AAGAAGGAAGGAGCTCCAATTGAAGAAACAACCTTAATTAGAGGAGTTGTTATTGACAAA
       :::::::::::::::::::::::::::::::::::::::::::: :::::: : ::::: 
b14367 AAGAAGGAAGGAGCTCCAATTGAAGAAACAACCTTAATTAGAGGGGTTGTTGTAGACAAG
              610       620       630       640       650       660

              670       680       690       700       710       720
b15878 GAGAGAGTCAACCCACAAATGCCAAAGAAAGTTGAAAACGCTAAGATTGCATTGTTAAAC
       :::::::::::::::::::::::::::::::::::::: ::::: :::::::: ::::::
b14367 GAGAGAGTCAACCCACAAATGCCAAAGAAAGTTGAAAATGCTAAAATTGCATTATTAAAC
              670       680       690       700       710       720

              730       740       750       760       770       780
b15878 TGCCCAATTGAAGTCAAAGAAACAGAAACTGATGCAGAGATAAGAATTACTGACCCAGCT
       :::::::::::::: :::::::: :::::::::::::: :::::::::::::::::: ::
b14367 TGCCCAATTGAAGTTAAAGAAACTGAAACTGATGCAGAAATAAGAATTACTGACCCAACT
              730       740       750       760       770       780

              790       800       810       820       830       840
b15878 AAGTTAATGGAGTTCATTGAGCAAGAAGAGAAGATGATTAAAGACATGGTTGAGAAAATA
       ::::::::::::::::::::::::::::: :: ::::::::::: ::::::::::: :::
b14367 AAGTTAATGGAGTTCATTGAGCAAGAAGAAAAAATGATTAAAGATATGGTTGAGAAGATA
              790       800       810       820       830       840

              850       860       870       880       890       900
b15878 GCTGCTACAGGAGCTAATGTTGTCTTCTGTCAAAAAGGAATTGATGACTTAGCTCAGCAC
       ::::: ::::::::::: ::::: ::::: ::::::::::::::::::::::::::::::
b14367 GCTGCCACAGGAGCTAACGTTGTATTCTGCCAAAAAGGAATTGATGACTTAGCTCAGCAC
              850       860       870       880       890       900

              910       920       930       940       950       960
b15878 TACTTAGCTAAGAAAGGAATCTTAGCAGTAAGAAGAGTTAAGAAGTCAGACATGGAGAAA
       :::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::
b14367 TACTTAGCTAAGAAAGGAATCTTAGCAGTAAGAAGAGTTAAGAAATCAGACATGGAGAAA
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
b15878 TTAGCTAAAGCTACAGGAGCAAGAATAATAACAAAAATTGATGACTTAACACCAGAAGAC
       :::::::: :: :::::::::: ::: :: ::::: ::::: ::::::::::::::::::
b14367 TTAGCTAAGGCAACAGGAGCAAAAATCATCACAAACATTGACGACTTAACACCAGAAGAC
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
b15878 CTTGGAGAAGCTGGATTAGTTGAAGAGAGAAAAGTTGCTGGAGATGCAATGATATTCGTT
        : ::::: :: ::::::::::::::::::::::::::::::::::::::::::::::: 
b14367 TTAGGAGAGGCAGGATTAGTTGAAGAGAGAAAAGTTGCTGGAGATGCAATGATATTCGTC
             1030      1040      1050      1060      1070      1080

             1090      1100      1110      1120      1130      1140
b15878 GAAGAGTGCAAGCATCCAAAGGCTGTAACAATCTTAGCAAGAGGTTCAACAGAGCACGTT
       ::: ::::::::::::::::::: ::::::::::::::::::::::::::::::::::::
b14367 GAACAGTGCAAGCATCCAAAGGCAGTAACAATCTTAGCAAGAGGTTCAACAGAGCACGTT
             1090      1100      1110      1120      1130      1140

             1150      1160      1170      1180      1190      1200
b15878 GTTGAAGAAGTTGCAAGAGCAATTGATGATGCAATTGGAGTTGTCAAGTGTGCATTAGAA
       :::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::
b14367 GTTGAAGAAGTTGCAAGAGCAATTGATGATGCAATTGGAGTTGTTAAGTGTGCATTAGAA
             1150      1160      1170      1180      1190      1200

             1210      1220      1230      1240      1250      1260
b15878 GAAGGTAAGATTGTTGCTGGTGGGGGAGCAACTGAGATAGAATTAGCTAAGAGATTAAGA
       ::::::::::::::::::::::::::::: ::::: ::::::::::::::::::::::::
b14367 GAAGGTAAGATTGTTGCTGGTGGGGGAGCTACTGAAATAGAATTAGCTAAGAGATTAAGA
             1210      1220      1230      1240      1250      1260

             1270      1280      1290      1300      1310      1320
b15878 AAATTCGCTGAAACAGTTGCTGGAAGAGAGCAGTTAGCAGTTAAGGCATTCGCTGATGCT
       :::::::::::::::::::::::::::::::::::::::::::  :::::::::::::: 
b14367 AAATTCGCTGAAACAGTTGCTGGAAGAGAGCAGTTAGCAGTTAGAGCATTCGCTGATGCA
             1270      1280      1290      1300      1310      1320

             1330      1340      1350      1360      1370      1380
b15878 TTAGAAGTAATACCAAGAACATTAGCTGAGAACTCAGGATTAGACCCAATTGACATGCTC
       :::::::: :: ::::::::::::::::::::::::::::::::::::::::::::::::
b14367 TTAGAAGTCATTCCAAGAACATTAGCTGAGAACTCAGGATTAGACCCAATTGACATGCTC
             1330      1340      1350      1360      1370      1380

             1390      1400      1410      1420      1430      1440
b15878 GTTAAGTTGAGAGCTGCTCACGAGAAAGAAGGCGGAGAAGTCTACGGATTAGACGTCTTC
       :::::::: :::::::::::::::::::::::::::::::: :  :::::::::::::::
b14367 GTTAAGTTAAGAGCTGCTCACGAGAAAGAAGGCGGAGAAGTTTGTGGATTAGACGTCTTC
             1390      1400      1410      1420      1430      1440

             1450      1460      1470      1480      1490      1500
b15878 GAAGGAGAAGTAGTTGATATGATGGAGAAAGGGGTTGTTGAACCATTGAAAGTCAAGACA
       ::::::::::: ::  : ::: : :: ::::: :::::::::::::::::::: :: :::
b14367 GAAGGAGAAGTTGTCAACATGTTAGAAAAAGGAGTTGTTGAACCATTGAAAGTTAAAACA
             1450      1460      1470      1480      1490      1500

             1510      1520      1530      1540      1550      1560
b15878 CAGGCAATTGACTCAGCTACAGAGGCATCAGTCATGCTCTTAAGAATCGATGACGTCATA
       :: :::::::::::::::::::: ::::::::::::::::::::::: ::::::::::::
b14367 CAAGCAATTGACTCAGCTACAGAAGCATCAGTCATGCTCTTAAGAATTGATGACGTCATA
             1510      1520      1530      1540      1550      1560

             1570         1580      1590      1600      1610       
b15878 GCTGCTGAGAAAGTTAA---AGAAGACAAGGGAGGAGAAGGAGGAGACATGGGAGGAGGT
       :::::::::::::::::   ::: :: :: :::::::::::::: ::::::   ::::::
b14367 GCTGCTGAGAAAGTTAAGGGAGATGAGAAAGGAGGAGAAGGAGGGGACATG---GGAGGT
             1570      1580      1590      1600      1610          

      1620         
b15878 GACGAATTTTAA
       :: :::::::::
b14367 GATGAATTTTAA
      1620         

</pre>
<hr>
<A name=b14497>
<pre>
>><a onClick="window.open('getRecord.php?id=b14497',
                                'cpndb_record'); return false;" href="getRecord.php?id=b14497" target=_"blank">b14497</a> NC_013407 Methanocaldococcus vulcanius M7 ATCC   (1629 nt)
 initn: 6935 init1: 6860 opt: 6939  Z-score: 185.8  bits: 47.3 E(): 3.9e-05
banded Smith-Waterman score: 6939; 91.9% identity (91.9% similar) in 1632 nt overlap (1-1629:1-1629)
<p>

               10        20        30        40        50        60
b15878 ATGGCAATGGCAGGAGCACCTATAGTAGTATTACCACAAAATGTTAAAAGATATGTTGGA
       :::::::::::::::::::: ::::: :::::::::::::: ::::: ::::: ::::::
b14497 ATGGCAATGGCAGGAGCACCAATAGTGGTATTACCACAAAACGTTAAGAGATACGTTGGA
               10        20        30        40        50        60

               70        80        90       100       110       120
b15878 AGAGACGCTCAAAGAATGAACATCTTAGCAGGTAGAATTATCGCTGAGACAGTTAGAACA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: 
b14497 AGAGACGCTCAAAGAATGAACATCTTAGCAGGTAGAATTATCGCTGAGACAGTTAGAACT
               70        80        90       100       110       120

              130       140       150       160       170       180
b15878 ACATTAGGACCAAAAGGAATGGACAAAATGTTAGTTGATGAATTAGGAGATATAGTTGTT
       :::::::: :::::::::::::::::::::::::::::::: ::::::::::: ::::::
b14497 ACATTAGGTCCAAAAGGAATGGACAAAATGTTAGTTGATGAGTTAGGAGATATTGTTGTT
              130       140       150       160       170       180

              190       200       210       220       230       240
b15878 ACAAACGACGGGGTTACAATATTAAAAGAAATGAGTGTTGAGCACCCAGCTGCTAAGATG
       :::::::: :::::::::::::::::::: ::::::::::::::::::::::::::::::
b14497 ACAAACGATGGGGTTACAATATTAAAAGAGATGAGTGTTGAGCACCCAGCTGCTAAGATG
              190       200       210       220       230       240

              250       260       270       280       290       300
b15878 TTAATTGAAGTTGCTAAAACCCAAGAAAAAGAAGTTGGAGACGGTACAACAACAGCAGTC
       ::::: ::::::::::: :: ::::: :::::::::::::: :: :::::::::::::: 
b14497 TTAATAGAAGTTGCTAAGACACAAGAGAAAGAAGTTGGAGATGGAACAACAACAGCAGTT
              250       260       270       280       290       300

              310       320       330       340       350       360
b15878 GTTATTGCTGGAGAGTTGTTAAGAAAAGCTGAAGAGTTGTTAGACCAAAACATCCACCCA
       ::::: :::::::::::::::::::: :: :::::::::::::::::::::::::: :::
b14497 GTTATCGCTGGAGAGTTGTTAAGAAAGGCAGAAGAGTTGTTAGACCAAAACATCCATCCA
              310       320       330       340       350       360

              370       380       390       400       410       420
b15878 TCAGTCATCATCAATGGATACGAGATGGCAAGAAATAAAGCAATTGAAGAGTTAAAGTCA
       :::::::: ::::: :::::::::::::::::::: :::::::::::::: :::::  ::
b14497 TCAGTCATTATCAACGGATACGAGATGGCAAGAAACAAAGCAATTGAAGAATTAAAAGCA
              370       380       390       400       410       420

              430       440       450       460       470       480
b15878 GTTGCTAAAGAAGTTAAACCAGATGACACTGAAATGTTAAAGAAAATTGCAATGACATCA
        :::::::::::::::: ::::: ::::: :: :::::::::::::::::::::::::::
b14497 ATTGCTAAAGAAGTTAAGCCAGAAGACACAGAGATGTTAAAGAAAATTGCAATGACATCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b15878 ATTACTGGTAAAGGAGCAGAGAAAGCAAGAGAGCAGTTAGCTGAAATCGTCGTTGAGGCA
       :: ::::::::::::::::::::::::::::  ::::::::::: ::::: :::::::::
b14497 ATCACTGGTAAAGGAGCAGAGAAAGCAAGAGGACAGTTAGCTGAGATCGTTGTTGAGGCA
              490       500       510       520       530       540

              550       560       570       580       590       600
b15878 GTTAGAACAGTTGTTGATGAAGAAACTGGAAAAGTTGATAAGGACTTAATTAAAGTTGAG
       :::::: : ::::::::::::::::: :::::::::::::::::::::::::::::::::
b14497 GTTAGAGCTGTTGTTGATGAAGAAACAGGAAAAGTTGATAAGGACTTAATTAAAGTTGAG
              550       560       570       580       590       600

              610       620       630       640       650       660
b15878 AAGAAGGAAGGAGCTCCAATTGAAGAAACAACCTTAATTAGAGGAGTTGTTATTGACAAA
       ::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::
b14497 AAGAAAGAAGGAGCTCCAATTGAAGAAACAACCTTAATTAGAGGAGTTGTTATTGACAAA
              610       620       630       640       650       660

              670       680       690       700       710       720
b15878 GAGAGAGTCAACCCACAAATGCCAAAGAAAGTTGAAAACGCTAAGATTGCATTGTTAAAC
       :: :::::::::::::::::::: ::::::::::::::::::::::::::::: ::::::
b14497 GAAAGAGTCAACCCACAAATGCCTAAGAAAGTTGAAAACGCTAAGATTGCATTATTAAAC
              670       680       690       700       710       720

              730       740       750       760       770       780
b15878 TGCCCAATTGAAGTCAAAGAAACAGAAACTGATGCAGAGATAAGAATTACTGACCCAGCT
       :::::::::::::::::::::::::: :: :::::::: :::::::::::::::::::::
b14497 TGCCCAATTGAAGTCAAAGAAACAGAGACAGATGCAGAAATAAGAATTACTGACCCAGCT
              730       740       750       760       770       780

              790       800       810       820       830       840
b15878 AAGTTAATGGAGTTCATTGAGCAAGAAGAGAAGATGATTAAAGACATGGTTGAGAAAATA
       :::::::::::::::::::::::::::::::::::::: ::::: ::::::::::: :: 
b14497 AAGTTAATGGAGTTCATTGAGCAAGAAGAGAAGATGATCAAAGATATGGTTGAGAAGATT
              790       800       810       820       830       840

              850       860       870       880       890       900
b15878 GCTGCTACAGGAGCTAATGTTGTCTTCTGTCAAAAAGGAATTGATGACTTAGCTCAGCAC
       ::: : ::::::::::::::::::::::: ::::::::::::::::::::::::::::::
b14497 GCTTCAACAGGAGCTAATGTTGTCTTCTGCCAAAAAGGAATTGATGACTTAGCTCAGCAC
              850       860       870       880       890       900

              910       920       930       940       950       960
b15878 TACTTAGCTAAGAAAGGAATCTTAGCAGTAAGAAGAGTTAAGAAGTCAGACATGGAGAAA
       :::::::::::::: ::::::::::::::::::::::::::::: :::::::::::::::
b14497 TACTTAGCTAAGAAGGGAATCTTAGCAGTAAGAAGAGTTAAGAAATCAGACATGGAGAAA
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
b15878 TTAGCTAAAGCTACAGGAGCAAGAATAATAACAAAAATTGATGACTTAACACCAGAAGAC
       :::::::: :: ::::::::::::::  : ::::: ::::: :::::::::::::: :::
b14497 TTAGCTAAGGCAACAGGAGCAAGAATCGTTACAAAGATTGACGACTTAACACCAGAGGAC
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
b15878 CTTGGAGAAGCTGGATTAGTTGAAGAGAGAAAAGTTGCTGGAGATGCAATGATATTCGTT
        : ::::: :: :::::::::::::::::::: :::::::::::::::::::::::::::
b14497 TTAGGAGAGGCAGGATTAGTTGAAGAGAGAAAGGTTGCTGGAGATGCAATGATATTCGTT
             1030      1040      1050      1060      1070      1080

             1090      1100      1110      1120      1130      1140
b15878 GAAGAGTGCAAGCATCCAAAGGCTGTAACAATCTTAGCAAGAGGTTCAACAGAGCACGTT
       ::  ::::::::::::::::::: ::::::::::: ::::::::::::::::::::::::
b14497 GAGCAGTGCAAGCATCCAAAGGCAGTAACAATCTTGGCAAGAGGTTCAACAGAGCACGTT
             1090      1100      1110      1120      1130      1140

             1150      1160      1170      1180      1190      1200
b15878 GTTGAAGAAGTTGCAAGAGCAATTGATGATGCAATTGGAGTTGTCAAGTGTGCATTAGAA
       ::::::::::::::::::::: : ::::::::::::::::::::::::::::::::::::
b14497 GTTGAAGAAGTTGCAAGAGCATTGGATGATGCAATTGGAGTTGTCAAGTGTGCATTAGAA
             1150      1160      1170      1180      1190      1200

             1210      1220      1230      1240      1250      1260
b15878 GAAGGTAAGATTGTTGCTGGTGGGGGAGCAACTGAGATAGAATTAGCTAAGAGATTAAGA
       ::::: ::::::::: : :: :: ::::::::::: :::::::: :::::::::::::::
b14497 GAAGGAAAGATTGTTTCAGGAGGAGGAGCAACTGAAATAGAATTGGCTAAGAGATTAAGA
             1210      1220      1230      1240      1250      1260

             1270      1280      1290      1300      1310      1320
b15878 AAATTCGCTGAAACAGTTGCTGGAAGAGAGCAGTTAGCAGTTAAGGCATTCGCTGATGCT
       :::::: ::::::::::::::::::::::::::::::::::::::::::: ::::: :: 
b14497 AAATTCTCTGAAACAGTTGCTGGAAGAGAGCAGTTAGCAGTTAAGGCATTTGCTGAAGCA
             1270      1280      1290      1300      1310      1320

             1330      1340      1350      1360      1370      1380
b15878 TTAGAAGTAATACCAAGAACATTAGCTGAGAACTCAGGATTAGACCCAATTGACATGCTC
       :::::::: :: :::::::: :: :::::::::::::: :::::::::::::::::: : 
b14497 TTAGAAGTTATTCCAAGAACCTTGGCTGAGAACTCAGGTTTAGACCCAATTGACATGTTG
             1330      1340      1350      1360      1370      1380

             1390      1400      1410      1420      1430      1440
b15878 GTTAAGTTGAGAGCTGCTCACGAGAAAGAAGGCGGAGAAGTCTACGGATTAGACGTCTTC
       :::::::: :::::::: :: ::::::::::::::::: :: :: ::::: :: ::::: 
b14497 GTTAAGTTAAGAGCTGCCCATGAGAAAGAAGGCGGAGATGTTTATGGATTGGATGTCTTT
             1390      1400      1410      1420      1430      1440

             1450      1460      1470      1480      1490      1500
b15878 GAAGGAGAAGTAGTTGATATGATGGAGAAAGGGGTTGTTGAACCATTGAAAGTCAAGACA
       ::::::::::: ::  : ::: : ::::: :: :::::::::::::::::::: ::::::
b14497 GAAGGAGAAGTTGTCAACATGTTAGAGAAGGGAGTTGTTGAACCATTGAAAGTTAAGACA
             1450      1460      1470      1480      1490      1500

             1510      1520      1530      1540      1550      1560
b15878 CAGGCAATTGACTCAGCTACAGAGGCATCAGTCATGCTCTTAAGAATCGATGACGTCATA
       ::::::::::::::::: ::::: :::::::::::::::::::::::::::::::: :::
b14497 CAGGCAATTGACTCAGCAACAGAAGCATCAGTCATGCTCTTAAGAATCGATGACGTTATA
             1510      1520      1530      1540      1550      1560

             1570      1580      1590      1600      1610          
b15878 GCTGCTGAGAAAGTTAAAGAAGACAAGGGAGGAGAAGGAGGAGACATGGGAG---GAGGT
       ::::::::::::::::::: :::  ::  :::    ::::::::::::::::     :: 
b14497 GCTGCTGAGAAAGTTAAAGGAGAAGAGAAAGG---CGGAGGAGACATGGGAGATATGGGA
             1570      1580      1590         1600      1610       

      1620         
b15878 GACGAATTTTAA
       :  ::::: :::
b14497 GGAGAATTCTAA
      1620         

</pre>
<hr>
<A name=b26333>
<pre>
>><a onClick="window.open('getRecord.php?id=b26333',
                                'cpndb_record'); return false;" href="getRecord.php?id=b26333" target=_"blank">b26333</a> NZ_APMM01000004 Methanocaldococcus villosus KIN  (1632 nt)
 initn: 5878 init1: 5878 opt: 5988  Z-score: 165.4  bits: 43.5 E(): 0.00054
banded Smith-Waterman score: 5988; 85.3% identity (85.3% similar) in 1632 nt overlap (1-1629:1-1632)
<p>

               10        20        30        40        50        60
b15878 ATGGCAATGGCAGGAGCACCTATAGTAGTATTACCACAAAATGTTAAAAGATATGTTGGA
       :::   ::::::::: : :: ::::::::::::::::::::::: :: ::::: ::::::
b26333 ATGAGCATGGCAGGAACTCCAATAGTAGTATTACCACAAAATGTAAAGAGATACGTTGGA
               10        20        30        40        50        60

               70        80        90       100       110       120
b15878 AGAGACGCTCAAAGAATGAACATCTTAGCAGGTAGAATTATCGCTGAGACAGTTAGAACA
       ::::: ::::::::::::::::: :::::::: ::::: :: ::::: :: :::::::: 
b26333 AGAGATGCTCAAAGAATGAACATATTAGCAGGGAGAATAATTGCTGAAACCGTTAGAACT
               70        80        90       100       110       120

              130       140       150       160       170       180
b15878 ACATTAGGACCAAAAGGAATGGACAAAATGTTAGTTGATGAATTAGGAGATATAGTTGTT
       ::::::::::::::::::::::::::::::::::::::::: :::::::: :: :: :::
b26333 ACATTAGGACCAAAAGGAATGGACAAAATGTTAGTTGATGAGTTAGGAGACATTGTAGTT
              130       140       150       160       170       180

              190       200       210       220       230       240
b15878 ACAAACGACGGGGTTACAATATTAAAAGAAATGAGTGTTGAGCACCCAGCTGCTAAGATG
       ::::: :: ::::::::::::::::::::::::  :::::: :::::::::::::: :::
b26333 ACAAATGATGGGGTTACAATATTAAAAGAAATGTCTGTTGAACACCCAGCTGCTAAAATG
              190       200       210       220       230       240

              250       260       270       280       290       300
b15878 TTAATTGAAGTTGCTAAAACCCAAGAAAAAGAAGTTGGAGACGGTACAACAACAGCAGTC
       ::::: :::::::::::::::::::: :::::::: ::::: :: :: :::::::: :: 
b26333 TTAATAGAAGTTGCTAAAACCCAAGAGAAAGAAGTAGGAGATGGAACTACAACAGCTGTG
              250       260       270       280       290       300

              310       320       330       340       350       360
b15878 GTTATTGCTGGAGAGTTGTTAAGAAAAGCTGAAGAGTTGTTAGACCAAAACATCCACCCA
       :::::::::::::: :: ::::::::::::::::: :: ::::: :::::::: ::::::
b26333 GTTATTGCTGGAGAATTATTAAGAAAAGCTGAAGAATTATTAGATCAAAACATACACCCA
              310       320       330       340       350       360

              370       380       390       400       410       420
b15878 TCAGTCATCATCAATGGATACGAGATGGCAAGAAATAAAGCAATTGAAGAGTTAAAGTCA
       :: :: :: :: :: ::::: :: :: :::::::::::::: :::::::: ::::::  :
b26333 TCTGTTATAATTAACGGATATGAAATAGCAAGAAATAAAGCTATTGAAGAATTAAAGAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b15878 GTTGCTAAAGAAGTTAAACCAGATGACACTGAAATGTTAAAGAAAATTGCAATGACATCA
        :::::::::::::::::::::::::::  :::::: : :: ::::: ::::::::  : 
b26333 ATTGCTAAAGAAGTTAAACCAGATGACAAAGAAATGCTCAAAAAAATAGCAATGACTGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b15878 ATTACTGGTAAAGGAGCAGAGAAAGCAAGAGAGCAGTTAGCTGAAATCGTCGTTGAGGCA
       :: ::::: ::::: :: :: :::::::::::  : ::::: ::::: :: ::::: :: 
b26333 ATAACTGGAAAAGGTGCTGAAAAAGCAAGAGAAAAATTAGCAGAAATTGTTGTTGAAGCT
              490       500       510       520       530       540

              550       560       570       580       590       600
b15878 GTTAGAACAGTTGTTGATGAAGAAACTGGAAAAGTTGATAAGGACTTAATTAAAGTTGAG
       ::::: :: ::: ::::::: ::::: ::::::::::: :: :: ::::: :::::::::
b26333 GTTAGCACTGTTATTGATGATGAAACAGGAAAAGTTGAAAAAGATTTAATAAAAGTTGAG
              550       560       570       580       590       600

              610       620       630       640       650       660
b15878 AAGAAGGAAGGAGCTCCAATTGAAGAAACAACCTTAATTAGAGGAGTTGTTATTGACAAA
       ::::: :::::::::::::::::::::::::: ::::::::::::::::: :::::::::
b26333 AAGAAAGAAGGAGCTCCAATTGAAGAAACAACATTAATTAGAGGAGTTGTAATTGACAAA
              610       620       630       640       650       660

              670       680       690       700       710       720
b15878 GAGAGAGTCAACCCACAAATGCCAAAGAAAGTTGAAAACGCTAAGATTGCATTGTTAAAC
       :: :::::  :::::::::::::::: : ::: ::::: ::::: :: ::::: ::::::
b26333 GAAAGAGTTCACCCACAAATGCCAAAAAGAGTAGAAAATGCTAAAATAGCATTATTAAAC
              670       680       690       700       710       720

              730       740       750       760       770       780
b15878 TGCCCAATTGAAGTCAAAGAAACAGAAACTGATGCAGAGATAAGAATTACTGACCCAGCT
       :::::::::::::: ::::::::::: : :::::: :: :::::::::::::: ::::: 
b26333 TGCCCAATTGAAGTTAAAGAAACAGAGATTGATGCTGAAATAAGAATTACTGATCCAGCA
              730       740       750       760       770       780

              790       800       810       820       830       840
b15878 AAGTTAATGGAGTTCATTGAGCAAGAAGAGAAGATGATTAAAGACATGGTTGAGAAAATA
       ::  ::::::: ::  :::: :::::::: :::::::::::::: :::::::: ::::::
b26333 AAAATAATGGAATTTGTTGAACAAGAAGAAAAGATGATTAAAGAAATGGTTGATAAAATA
              790       800       810       820       830       840

              850       860       870       880       890       900
b15878 GCTGCTACAGGAGCTAATGTTGTCTTCTGTCAAAAAGGAATTGATGACTTAGCTCAGCAC
       :::::::: ::::::::::: :::::::::::::::::::::::::: ::::: :: :::
b26333 GCTGCTACTGGAGCTAATGTAGTCTTCTGTCAAAAAGGAATTGATGATTTAGCACAACAC
              850       860       870       880       890       900

              910       920       930       940       950       960
b15878 TACTTAGCTAAGAAAGGAATCTTAGCAGTAAGAAGAGTTAAGAAGTCAGACATGGAGAAA
       :::::::::::::::::::: ::::: :: :::::::::::::::::::: :::::::::
b26333 TACTTAGCTAAGAAAGGAATATTAGCTGTTAGAAGAGTTAAGAAGTCAGATATGGAGAAA
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
b15878 TTAGCTAAAGCTACAGGAGCAAGAATAATAACAAAAATTGATGACTTAACACCAGAAGAC
       ::::: :::::::: ::::: :::::: : ::::::::::::::::::::::::::::::
b26333 TTAGCAAAAGCTACTGGAGCTAGAATAGTTACAAAAATTGATGACTTAACACCAGAAGAC
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
b15878 CTTGGAGAAGCTGGATTAGTTGAAGAGAGAAAAGTTGCTGGAGATGCAATGATATTCGTT
        : ::::::::::: ::::: :: ::::::::::: :::::::::::::::::::: :::
b26333 TTAGGAGAAGCTGGGTTAGTAGAGGAGAGAAAAGTAGCTGGAGATGCAATGATATTTGTT
             1030      1040      1050      1060      1070      1080

             1090      1100      1110      1120      1130      1140
b15878 GAAGAGTGCAAGCATCCAAAGGCTGTAACAATCTTAGCAAGAGGTTCAACAGAGCACGTT
       ::: : ::::: :::::::: ::::::::::: ::::::::::::::::: :: ::  ::
b26333 GAAAACTGCAAACATCCAAAAGCTGTAACAATATTAGCAAGAGGTTCAACTGAACATATT
             1090      1100      1110      1120      1130      1140

             1150      1160      1170      1180      1190      1200
b15878 GTTGAAGAAGTTGCAAGAGCAATTGATGATGCAATTGGAGTTGTCAAGTGTGCATTAGAA
       ::::::::::: :::::::: :: :::::::: :: :::::::: :::::::: ::::::
b26333 GTTGAAGAAGTGGCAAGAGCTATAGATGATGCTATAGGAGTTGTTAAGTGTGCTTTAGAA
             1150      1160      1170      1180      1190      1200

             1210      1220      1230      1240      1250      1260
b15878 GAAGGTAAGATTGTTGCTGGTGGGGGAGCAACTGAGATAGAATTAGCTAAGAGATTAAGA
       :: :: :  :: :::: :::::: ::::: :: :: :::::::::::::::::: : :: 
b26333 GATGGAAGAATAGTTGTTGGTGGAGGAGCTACAGAAATAGAATTAGCTAAGAGAATTAGC
             1210      1220      1230      1240      1250      1260

             1270      1280      1290      1300      1310      1320
b15878 AAATTCGCTGAAACAGTTGCTGGAAGAGAGCAGTTAGCAGTTAAGGCATTCGCTGATGCT
       ::::: :: ::::: :::::::::::::: :: ::::: ::::::::::: ::::: :::
b26333 AAATTTGCAGAAACTGTTGCTGGAAGAGAACAATTAGCTGTTAAGGCATTTGCTGAAGCT
             1270      1280      1290      1300      1310      1320

             1330      1340      1350      1360      1370      1380
b15878 TTAGAAGTAATACCAAGAACATTAGCTGAGAACTCAGGATTAGACCCAATTGACATGCTC
       :::::: : :: :::::::::::::: :: ::::: :::::::::::::: :: ::: : 
b26333 TTAGAAATCATTCCAAGAACATTAGCAGAAAACTCTGGATTAGACCCAATAGATATGTTA
             1330      1340      1350      1360      1370      1380

             1390      1400      1410      1420      1430      1440
b15878 GTTAAGTTGAGAGCTGCTCACGAGAAAGAAGGCGGAGAAGTCTACGGATTAGACGTCTTC
       :::::::: ::::::   :: ::  ::::::: :::::::: ::::::::::: :: :: 
b26333 GTTAAGTTAAGAGCTAAACATGAAGAAGAAGGAGGAGAAGTTTACGGATTAGATGTGTTT
             1390      1400      1410      1420      1430      1440

             1450      1460      1470      1480      1490      1500
b15878 GAAGGAGAAGTAGTTGATATGATGGAGAAAGGGGTTGTTGAACCATTGAAAGTCAAGACA
       ::::::::::: ::: ::::: : :: : ::: :::::::::::::: ::::: :: :::
b26333 GAAGGAGAAGTTGTTAATATGTTAGAAAGAGGAGTTGTTGAACCATTAAAAGTTAAAACA
             1450      1460      1470      1480      1490      1500

             1510      1520      1530      1540      1550      1560
b15878 CAGGCAATTGACTCAGCTACAGAGGCATCAGTCATGCTCTTAAGAATCGATGACGTCATA
       :: :: ::::: ::::::::::: :: ::: : ::: : :::::::: ::::: :: :::
b26333 CAAGCTATTGATTCAGCTACAGAAGCTTCAATAATGTTGTTAAGAATTGATGATGTTATA
             1510      1520      1530      1540      1550      1560

             1570         1580      1590      1600      1610       
b15878 GCTGCTGAGAA---AGTTAAAGAAGACAAGGGAGGAGAAGGAGGAGACATGGGAGGAGGT
       ::::: :::::   ::  :::::: :  :   ::::   ::::::::    :  ::::: 
b26333 GCTGCAGAGAAGTCAGAGAAAGAAAAAGAAAAAGGACCTGGAGGAGAAGAAGAGGGAGGG
             1570      1580      1590      1600      1610      1620

      1620         
b15878 GACGAATTTTAA
       :: ::::: :::
b26333 GATGAATTCTAA
             1630  

</pre>
<hr>
<A name=b16606>
<pre>
>><a onClick="window.open('getRecord.php?id=b16606',
                                'cpndb_record'); return false;" href="getRecord.php?id=b16606" target=_"blank">b16606</a> CP002009 Methanocaldococcus infernus ME          (1623 nt)
 initn: 5901 init1: 5901 opt: 5988  Z-score: 165.4  bits: 43.5 E(): 0.00054
banded Smith-Waterman score: 5988; 85.5% identity (85.5% similar) in 1632 nt overlap (1-1629:1-1623)
<p>

               10        20        30        40        50        60
b15878 ATGGCAATGGCAGGAGCACCTATAGTAGTATTACCACAAAATGTTAAAAGATATGTTGGA
       :::::::::      :: :: :::::::: :::::: : :::::::: ::::: ::::::
b16606 ATGGCAATG---AACGCTCCAATAGTAGTTTTACCAGAGAATGTTAAGAGATACGTTGGA
                  10        20        30        40        50       

               70        80        90       100       110       120
b15878 AGAGACGCTCAAAGAATGAACATCTTAGCAGGTAGAATTATCGCTGAGACAGTTAGAACA
       ::::: :::::::::::::::::::: ::::: ::::: :: :::::::: :: ::::: 
b16606 AGAGATGCTCAAAGAATGAACATCTTGGCAGGGAGAATAATAGCTGAGACTGTAAGAACT
        60        70        80        90       100       110       

              130       140       150       160       170       180
b15878 ACATTAGGACCAAAAGGAATGGACAAAATGTTAGTTGATGAATTAGGAGATATAGTTGTT
       :: ::::::::::: ::::::::::: :::::::::::::: :::::::::::: : :::
b16606 ACCTTAGGACCAAAGGGAATGGACAAGATGTTAGTTGATGAGTTAGGAGATATAATAGTT
       120       130       140       150       160       170       

              190       200       210       220       230       240
b15878 ACAAACGACGGGGTTACAATATTAAAAGAAATGAGTGTTGAGCACCCAGCTGCTAAGATG
       :: :::::::: ::::: ::::::::::: ::::::::::: :: :::::::::::::::
b16606 ACTAACGACGGAGTTACCATATTAAAAGAGATGAGTGTTGAACATCCAGCTGCTAAGATG
       180       190       200       210       220       230       

              250       260       270       280       290       300
b15878 TTAATTGAAGTTGCTAAAACCCAAGAAAAAGAAGTTGGAGACGGTACAACAACAGCAGTC
       ::::::::::: ::::: :: ::::: ::::: :::::::: :: :: :::::::: :: 
b16606 TTAATTGAAGTCGCTAAGACTCAAGAGAAAGAGGTTGGAGATGGAACTACAACAGCTGTT
       240       250       260       270       280       290       

              310       320       330       340       350       360
b15878 GTTATTGCTGGAGAGTTGTTAAGAAAAGCTGAAGAGTTGTTAGACCAAAACATCCACCCA
       ::::: ::::::::::: :::::::: ::::::::::::::::: :: :: :: ::::::
b16606 GTTATCGCTGGAGAGTTATTAAGAAAGGCTGAAGAGTTGTTAGATCAGAATATACACCCA
       300       310       320       330       340       350       

              370       380       390       400       410       420
b15878 TCAGTCATCATCAATGGATACGAGATGGCAAGAAATAAAGCAATTGAAGAGTTAAAGTCA
          :: :: :: :: :: :: ::: : ::::::::::: :: :: :: :::::::::   
b16606 AGTGTTATAATAAACGGTTATGAGTTAGCAAGAAATAAGGCTATAGAGGAGTTAAAGAAC
       360       370       380       390       400       410       

              430       440       450       460       470       480
b15878 GTTGCTAAAGAAGTTAAACCAGATGACACTGAAATGTTAAAGAAAATTGCAATGACATCA
        : ::::: :::::::: ::::: ::::::::::::::::::::::: :::::::: :::
b16606 ATAGCTAAGGAAGTTAAGCCAGAAGACACTGAAATGTTAAAGAAAATCGCAATGACTTCA
       420       430       440       450       460       470       

              490       500       510       520       530       540
b15878 ATTACTGGTAAAGGAGCAGAGAAAGCAAGAGAGCAGTTAGCTGAAATCGTCGTTGAGGCA
       :: ::::: :::::::: ::::: ::::::::: ::::::::::::: :::::::: :: 
b16606 ATAACTGGAAAAGGAGCTGAGAAGGCAAGAGAGAAGTTAGCTGAAATAGTCGTTGAAGCT
       480       490       500       510       520       530       

              550       560       570       580       590       600
b15878 GTTAGAACAGTTGTTGATGAAGAAACTGGAAAAGTTGATAAGGACTTAATTAAAGTTGAG
       :::::: : :: ::::::::::: ::::::::::::::::: :: ::::: :::::::::
b16606 GTTAGATCTGTCGTTGATGAAGAGACTGGAAAAGTTGATAAAGATTTAATAAAAGTTGAG
       540       550       560       570       580       590       

              610       620       630       640       650       660
b15878 AAGAAGGAAGGAGCTCCAATTGAAGAAACAACCTTAATTAGAGGAGTTGTTATTGACAAA
       :::::::::::::::::::: ::::::::::::::::: : :::::::::::::::::: 
b16606 AAGAAGGAAGGAGCTCCAATAGAAGAAACAACCTTAATAAAAGGAGTTGTTATTGACAAG
       600       610       620       630       640       650       

              670       680       690       700       710       720
b15878 GAGAGAGTCAACCCACAAATGCCAAAGAAAGTTGAAAACGCTAAGATTGCATTGTTAAAC
       :::::::: ::::::::::::::::::::::: :::::::::::::: ::::: ::::::
b16606 GAGAGAGTTAACCCACAAATGCCAAAGAAAGTAGAAAACGCTAAGATAGCATTATTAAAC
       660       670       680       690       700       710       

              730       740       750       760       770       780
b15878 TGCCCAATTGAAGTCAAAGAAACAGAAACTGATGCAGAGATAAGAATTACTGACCCAGCT
       :::::::::::::: :::::::: :::::::: :: ::::::::::: :::::::::  :
b16606 TGCCCAATTGAAGTTAAAGAAACTGAAACTGACGCTGAGATAAGAATAACTGACCCAAGT
       720       730       740       750       760       770       

              790       800       810       820       830       840
b15878 AAGTTAATGGAGTTCATTGAGCAAGAAGAGAAGATGATTAAAGACATGGTTGAGAAAATA
       :::::::: :::::::: :::::::::::::: :::::::: :: :::::::: :: :::
b16606 AAGTTAATTGAGTTCATCGAGCAAGAAGAGAAAATGATTAAGGATATGGTTGATAAGATA
       780       790       800       810       820       830       

              850       860       870       880       890       900
b15878 GCTGCTACAGGAGCTAATGTTGTCTTCTGTCAAAAAGGAATTGATGACTTAGCTCAGCAC
       :::::::: :::::::: :: :: :::::::: :: :::::::: :::::::::::::::
b16606 GCTGCTACTGGAGCTAACGTAGTGTTCTGTCAGAAGGGAATTGACGACTTAGCTCAGCAC
       840       850       860       870       880       890       

              910       920       930       940       950       960
b15878 TACTTAGCTAAGAAAGGAATCTTAGCAGTAAGAAGAGTTAAGAAGTCAGACATGGAGAAA
       :::::::::::::: :::::::::::::: :::::::::::::::::::: :::::::::
b16606 TACTTAGCTAAGAAGGGAATCTTAGCAGTTAGAAGAGTTAAGAAGTCAGATATGGAGAAA
       900       910       920       930       940       950       

              970       980       990      1000      1010      1020
b15878 TTAGCTAAAGCTACAGGAGCAAGAATAATAACAAAAATTGATGACTTAACACCAGAAGAC
       :::::::: ::::: :::::::::::  : :: :: :: ::::::::::: :::::::::
b16606 TTAGCTAAGGCTACTGGAGCAAGAATCGTTACTAAGATAGATGACTTAACCCCAGAAGAC
       960       970       980       990      1000      1010       

             1030      1040      1050      1060      1070      1080
b15878 CTTGGAGAAGCTGGATTAGTTGAAGAGAGAAAAGTTGCTGGAGATGCAATGATATTCGTT
       :::::::: ::::::::::::::::::::::: ::::::::::: :::::::: ::::::
b16606 CTTGGAGAGGCTGGATTAGTTGAAGAGAGAAAGGTTGCTGGAGACGCAATGATCTTCGTT
      1020      1030      1040      1050      1060      1070       

             1090      1100      1110      1120      1130      1140
b15878 GAAGAGTGCAAGCATCCAAAGGCTGTAACAATCTTAGCAAGAGGTTCAACAGAGCACGTT
       ::: : ::::::::::::::::: :: ::::: ::::::::::::::::: :::::::::
b16606 GAAAACTGCAAGCATCCAAAGGCAGTTACAATATTAGCAAGAGGTTCAACCGAGCACGTT
      1080      1090      1100      1110      1120      1130       

             1150      1160      1170      1180      1190      1200
b15878 GTTGAAGAAGTTGCAAGAGCAATTGATGATGCAATTGGAGTTGTCAAGTGTGCATTAGAA
       :::::::: :::::::::::  : :: ::::: :: :: ::::: ::::: :: ::::: 
b16606 GTTGAAGAGGTTGCAAGAGCTTTAGAAGATGCTATAGGCGTTGTTAAGTGCGCCTTAGAG
      1140      1150      1160      1170      1180      1190       

             1210      1220      1230      1240      1250      1260
b15878 GAAGGTAAGATTGTTGCTGGTGGGGGAGCAACTGAGATAGAATTAGCTAAGAGATTAAGA
       :: :: :  ::::: :: ::::: :::::  :::::::::: ::::::::::::::::::
b16606 GATGGAAGAATTGTAGCCGGTGGAGGAGCTGCTGAGATAGAGTTAGCTAAGAGATTAAGA
      1200      1210      1220      1230      1240      1250       

             1270      1280      1290      1300      1310      1320
b15878 AAATTCGCTGAAACAGTTGCTGGAAGAGAGCAGTTAGCAGTTAAGGCATTCGCTGATGCT
       :::: : ::::::   : :  :::::::::::  : :: ::::  :: ::::: ::::: 
b16606 AAATACTCTGAAAGTATAGAAGGAAGAGAGCAACTCGCTGTTAGAGCTTTCGCAGATGCA
      1260      1270      1280      1290      1300      1310       

             1330      1340      1350      1360      1370      1380
b15878 TTAGAAGTAATACCAAGAACATTAGCTGAGAACTCAGGATTAGACCCAATTGACATGCTC
       ::::: ::::: :::::::: ::::: ::::::::::::::::: :::::::::::: : 
b16606 TTAGAGGTAATTCCAAGAACCTTAGCCGAGAACTCAGGATTAGATCCAATTGACATGTTA
      1320      1330      1340      1350      1360      1370       

             1390      1400      1410      1420      1430      1440
b15878 GTTAAGTTGAGAGCTGCTCACGAGAAAGAAGGCGGAGAAGTCTACGGATTAGACGTCTTC
       :: ::::: ::::::::::::::::::::::: :::::::: ::::::::::: ::::: 
b16606 GTCAAGTTAAGAGCTGCTCACGAGAAAGAAGGAGGAGAAGTTTACGGATTAGATGTCTTT
      1380      1390      1400      1410      1420      1430       

             1450      1460      1470      1480      1490      1500
b15878 GAAGGAGAAGTAGTTGATATGATGGAGAAAGGGGTTGTTGAACCATTGAAAGTCAAGACA
       ::::::::::: ::: : ::: : :::::::: :::::::: ::::: :: :: ::::: 
b16606 GAAGGAGAAGTCGTTAACATGTTAGAGAAAGGAGTTGTTGAGCCATTAAAGGTTAAGACT
      1440      1450      1460      1470      1480      1490       

             1510      1520      1530      1540      1550      1560
b15878 CAGGCAATTGACTCAGCTACAGAGGCATCAGTCATGCTCTTAAGAATCGATGACGTCATA
       :: :: :: ::::::::::: :: :: ::::: :::::::::::::: ::::: ::::::
b16606 CAAGCTATAGACTCAGCTACTGAAGCGTCAGTTATGCTCTTAAGAATTGATGATGTCATA
      1500      1510      1520      1530      1540      1550       

             1570      1580      1590      1600      1610          
b15878 GCTGCTGAGAAAGTTAAAGAAGACAAGGGAGGAGAAGGAGGAGACATGGGAGG---AGGT
       ::::: ::::::   :: :  :: ::: ::    :::: ::::  ::::::::   :: :
b16606 GCTGCAGAGAAATCCAAGG--GAGAAGAGA----AAGGCGGAGGAATGGGAGGAGAAGAT
      1560      1570        1580          1590      1600      1610 

      1620         
b15878 GACGAATTTTAA
       :: :: :: :::
b16606 GAGGAGTTCTAA
            1620   

</pre>
<hr>
<A name=b16885>
<pre>
>><a onClick="window.open('getRecord.php?id=b16885',
                                'cpndb_record'); return false;" href="getRecord.php?id=b16885" target=_"blank">b16885</a> CP002009 Methanocaldococcus infernus ME          (1623 nt)
 initn: 5865 init1: 5865 opt: 5961  Z-score: 164.8  bits: 43.4 E(): 0.00058
banded Smith-Waterman score: 5961; 85.4% identity (85.4% similar) in 1632 nt overlap (1-1629:1-1623)
<p>

               10        20        30        40        50        60
b15878 ATGGCAATGGCAGGAGCACCTATAGTAGTATTACCACAAAATGTTAAAAGATATGTTGGA
       :::::::::      :: :: :::::::: :::::: : :::::::: ::::: ::::::
b16885 ATGGCAATG---AACGCTCCAATAGTAGTTTTACCAGAGAATGTTAAGAGATACGTTGGA
                  10        20        30        40        50       

               70        80        90       100       110       120
b15878 AGAGACGCTCAAAGAATGAACATCTTAGCAGGTAGAATTATCGCTGAGACAGTTAGAACA
       ::::: :::::::::::::::::::: ::::: ::::: :: :::::::: :: ::::: 
b16885 AGAGATGCTCAAAGAATGAACATCTTGGCAGGGAGAATAATAGCTGAGACTGTAAGAACT
        60        70        80        90       100       110       

              130       140       150       160       170       180
b15878 ACATTAGGACCAAAAGGAATGGACAAAATGTTAGTTGATGAATTAGGAGATATAGTTGTT
       :: ::::::::::: ::::::::::: ::::::::::: :: :::::::::::: : :::
b16885 ACCTTAGGACCAAAGGGAATGGACAAGATGTTAGTTGACGAGTTAGGAGATATAATAGTT
       120       130       140       150       160       170       

              190       200       210       220       230       240
b15878 ACAAACGACGGGGTTACAATATTAAAAGAAATGAGTGTTGAGCACCCAGCTGCTAAGATG
       :: :::::::: ::::: ::::::::::: ::::::::::: :: :::::::::::::::
b16885 ACTAACGACGGAGTTACCATATTAAAAGAGATGAGTGTTGAACATCCAGCTGCTAAGATG
       180       190       200       210       220       230       

              250       260       270       280       290       300
b15878 TTAATTGAAGTTGCTAAAACCCAAGAAAAAGAAGTTGGAGACGGTACAACAACAGCAGTC
       ::::::::::: ::::: :: ::::: ::::: :::::::: :: :: :::::::: :: 
b16885 TTAATTGAAGTCGCTAAGACTCAAGAGAAAGAGGTTGGAGATGGAACTACAACAGCTGTT
       240       250       260       270       280       290       

              310       320       330       340       350       360
b15878 GTTATTGCTGGAGAGTTGTTAAGAAAAGCTGAAGAGTTGTTAGACCAAAACATCCACCCA
       ::::: ::::::::::: :::::::: ::::::::::::::::: :: :: :: ::::::
b16885 GTTATCGCTGGAGAGTTATTAAGAAAGGCTGAAGAGTTGTTAGATCAGAATATACACCCA
       300       310       320       330       340       350       

              370       380       390       400       410       420
b15878 TCAGTCATCATCAATGGATACGAGATGGCAAGAAATAAAGCAATTGAAGAGTTAAAGTCA
          :: :: :: :: :: :: ::: : ::::::::::: :: :: :: :::::::::   
b16885 AGTGTTATAATAAACGGTTATGAGTTAGCAAGAAATAAGGCTATAGAGGAGTTAAAGAAC
       360       370       380       390       400       410       

              430       440       450       460       470       480
b15878 GTTGCTAAAGAAGTTAAACCAGATGACACTGAAATGTTAAAGAAAATTGCAATGACATCA
        : ::::: :::::::: ::::: ::::::::::::::::::::::: :::::::: :::
b16885 ATAGCTAAGGAAGTTAAGCCAGAAGACACTGAAATGTTAAAGAAAATCGCAATGACTTCA
       420       430       440       450       460       470       

              490       500       510       520       530       540
b15878 ATTACTGGTAAAGGAGCAGAGAAAGCAAGAGAGCAGTTAGCTGAAATCGTCGTTGAGGCA
       :: ::::: :::::::: ::::: ::::::::: ::::::::::::: :::::::: :: 
b16885 ATAACTGGAAAAGGAGCTGAGAAGGCAAGAGAGAAGTTAGCTGAAATAGTCGTTGAAGCT
       480       490       500       510       520       530       

              550       560       570       580       590       600
b15878 GTTAGAACAGTTGTTGATGAAGAAACTGGAAAAGTTGATAAGGACTTAATTAAAGTTGAG
       :::::: : :: ::::::::::: ::::::::::::::::: :: ::::: :::::::::
b16885 GTTAGATCTGTCGTTGATGAAGAGACTGGAAAAGTTGATAAAGATTTAATAAAAGTTGAG
       540       550       560       570       580       590       

              610       620       630       640       650       660
b15878 AAGAAGGAAGGAGCTCCAATTGAAGAAACAACCTTAATTAGAGGAGTTGTTATTGACAAA
       :::::::::::::::::::: ::::::::::::::::: : :::::::::::::::::: 
b16885 AAGAAGGAAGGAGCTCCAATAGAAGAAACAACCTTAATAAAAGGAGTTGTTATTGACAAG
       600       610       620       630       640       650       

              670       680       690       700       710       720
b15878 GAGAGAGTCAACCCACAAATGCCAAAGAAAGTTGAAAACGCTAAGATTGCATTGTTAAAC
       :::::::: ::::::::::::::::::::::: :::::::::::::: ::::: ::::::
b16885 GAGAGAGTTAACCCACAAATGCCAAAGAAAGTAGAAAACGCTAAGATAGCATTATTAAAC
       660       670       680       690       700       710       

              730       740       750       760       770       780
b15878 TGCCCAATTGAAGTCAAAGAAACAGAAACTGATGCAGAGATAAGAATTACTGACCCAGCT
       :::::::::::::: :::::::: :::::::: :: ::::::::::: :::::::::  :
b16885 TGCCCAATTGAAGTTAAAGAAACTGAAACTGACGCTGAGATAAGAATAACTGACCCAAGT
       720       730       740       750       760       770       

              790       800       810       820       830       840
b15878 AAGTTAATGGAGTTCATTGAGCAAGAAGAGAAGATGATTAAAGACATGGTTGAGAAAATA
       :::::::: :::::::: :::::::::::::: :::::::: :: :::::::: :: :::
b16885 AAGTTAATTGAGTTCATCGAGCAAGAAGAGAAAATGATTAAGGATATGGTTGATAAGATA
       780       790       800       810       820       830       

              850       860       870       880       890       900
b15878 GCTGCTACAGGAGCTAATGTTGTCTTCTGTCAAAAAGGAATTGATGACTTAGCTCAGCAC
       :::::::: :::::::: :: :: :::::::: :: :::::::: :::::::::::::::
b16885 GCTGCTACTGGAGCTAACGTAGTGTTCTGTCAGAAGGGAATTGACGACTTAGCTCAGCAC
       840       850       860       870       880       890       

              910       920       930       940       950       960
b15878 TACTTAGCTAAGAAAGGAATCTTAGCAGTAAGAAGAGTTAAGAAGTCAGACATGGAGAAA
       :::::::::::::: :::::::::::::: :::::::::::::::::::: :::::::::
b16885 TACTTAGCTAAGAAGGGAATCTTAGCAGTTAGAAGAGTTAAGAAGTCAGATATGGAGAAA
       900       910       920       930       940       950       

              970       980       990      1000      1010      1020
b15878 TTAGCTAAAGCTACAGGAGCAAGAATAATAACAAAAATTGATGACTTAACACCAGAAGAC
       :::::::: ::::: :::::::::::  : :: :: :: ::::::::::: :::::::::
b16885 TTAGCTAAGGCTACTGGAGCAAGAATCGTTACTAAGATAGATGACTTAACCCCAGAAGAC
       960       970       980       990      1000      1010       

             1030      1040      1050      1060      1070      1080
b15878 CTTGGAGAAGCTGGATTAGTTGAAGAGAGAAAAGTTGCTGGAGATGCAATGATATTCGTT
       :::::::: ::::::::::::::::::::::: ::::::::::: :::::::: ::::::
b16885 CTTGGAGAGGCTGGATTAGTTGAAGAGAGAAAGGTTGCTGGAGACGCAATGATCTTCGTT
      1020      1030      1040      1050      1060      1070       

             1090      1100      1110      1120      1130      1140
b15878 GAAGAGTGCAAGCATCCAAAGGCTGTAACAATCTTAGCAAGAGGTTCAACAGAGCACGTT
       ::: : ::::::::::::::::: :: ::::: ::::::::::::::::: :::::::::
b16885 GAAAACTGCAAGCATCCAAAGGCAGTTACAATATTAGCAAGAGGTTCAACCGAGCACGTT
      1080      1090      1100      1110      1120      1130       

             1150      1160      1170      1180      1190      1200
b15878 GTTGAAGAAGTTGCAAGAGCAATTGATGATGCAATTGGAGTTGTCAAGTGTGCATTAGAA
       :::::::: :::::::::::  : :: ::::: :: :: ::::: ::::: :: ::::: 
b16885 GTTGAAGAGGTTGCAAGAGCTTTAGAAGATGCTATAGGCGTTGTTAAGTGCGCCTTAGAG
      1140      1150      1160      1170      1180      1190       

             1210      1220      1230      1240      1250      1260
b15878 GAAGGTAAGATTGTTGCTGGTGGGGGAGCAACTGAGATAGAATTAGCTAAGAGATTAAGA
       :: :: :  ::::: :: ::::: :::::  :::::::::: ::::::::::::::::::
b16885 GATGGAAGAATTGTAGCCGGTGGAGGAGCTGCTGAGATAGAGTTAGCTAAGAGATTAAGA
      1200      1210      1220      1230      1240      1250       

             1270      1280      1290      1300      1310      1320
b15878 AAATTCGCTGAAACAGTTGCTGGAAGAGAGCAGTTAGCAGTTAAGGCATTCGCTGATGCT
       :::: : ::::::   : :  :::::::::::  : :: ::::  :: ::::: ::::: 
b16885 AAATACTCTGAAAGTATAGAAGGAAGAGAGCAACTCGCTGTTAGAGCTTTCGCAGATGCA
      1260      1270      1280      1290      1300      1310       

             1330      1340      1350      1360      1370      1380
b15878 TTAGAAGTAATACCAAGAACATTAGCTGAGAACTCAGGATTAGACCCAATTGACATGCTC
       ::::: ::::: :::::::: ::::: :::::::: :::::::: :::::::::::: : 
b16885 TTAGAGGTAATTCCAAGAACCTTAGCCGAGAACTCTGGATTAGATCCAATTGACATGTTA
      1320      1330      1340      1350      1360      1370       

             1390      1400      1410      1420      1430      1440
b15878 GTTAAGTTGAGAGCTGCTCACGAGAAAGAAGGCGGAGAAGTCTACGGATTAGACGTCTTC
       :: ::::: :::::::: :::::::::::::: :::::::: ::::::::::: ::::: 
b16885 GTCAAGTTAAGAGCTGCACACGAGAAAGAAGGAGGAGAAGTTTACGGATTAGATGTCTTT
      1380      1390      1400      1410      1420      1430       

             1450      1460      1470      1480      1490      1500
b15878 GAAGGAGAAGTAGTTGATATGATGGAGAAAGGGGTTGTTGAACCATTGAAAGTCAAGACA
       ::::::::::: ::: : ::: : :: ::::: :::::::: ::::: :: :: ::::: 
b16885 GAAGGAGAAGTCGTTAACATGTTAGAAAAAGGAGTTGTTGAGCCATTAAAGGTTAAGACT
      1440      1450      1460      1470      1480      1490       

             1510      1520      1530      1540      1550      1560
b15878 CAGGCAATTGACTCAGCTACAGAGGCATCAGTCATGCTCTTAAGAATCGATGACGTCATA
       :: :: :: ::::::::::: :: :: ::::: :::::::::::::: ::::: ::::::
b16885 CAAGCTATAGACTCAGCTACTGAAGCGTCAGTTATGCTCTTAAGAATTGATGATGTCATA
      1500      1510      1520      1530      1540      1550       

             1570      1580      1590      1600      1610          
b15878 GCTGCTGAGAAAGTTAAAGAAGACAAGGGAGGAGAAGGAGGAGACATGGGAGG---AGGT
       ::::: ::::::   ::::  :: ::: ::    :::: ::::  ::::::::   :: :
b16885 GCTGCAGAGAAATCCAAAG--GAGAAGAGA----AAGGCGGAGGAATGGGAGGAGAAGAT
      1560      1570        1580          1590      1600      1610 

      1620         
b15878 GACGAATTTTAA
       :: :: :: :::
b16885 GAGGAGTTCTAA
            1620   

</pre>
<hr>
<A name=b19214>
<pre>
>><a onClick="window.open('getRecord.php?id=b19214',
                                'cpndb_record'); return false;" href="getRecord.php?id=b19214" target=_"blank">b19214</a> NC_015562 Methanotorris igneus Kol 5             (1626 nt)
 initn: 5456 init1: 3015 opt: 5457  Z-score: 153.9  bits: 41.4 E(): 0.0023
banded Smith-Waterman score: 5457; 81.9% identity (81.9% similar) in 1632 nt overlap (1-1629:1-1626)
<p>

               10        20        30        40        50        60
b15878 ATGGCAATGGCAGGAGCACCTATAGTAGTATTACCACAAAATGTTAAAAGATATGTTGGA
       :::::::     ::   :::  :  : ::::::::: :::::::::: ::::: ::::: 
b19214 ATGGCAACATTGGGCCAACCAGTTATTGTATTACCAGAAAATGTTAAGAGATACGTTGGT
               10        20        30        40        50        60

               70        80        90       100       110       120
b15878 AGAGACGCTCAAAGAATGAACATCTTAGCAGGTAGAATTATCGCTGAGACAGTTAGAACA
       ::::: :::::::::::::::::::::::::::::: :::: ::::: ::::::::::::
b19214 AGAGATGCTCAAAGAATGAACATCTTAGCAGGTAGAGTTATTGCTGAAACAGTTAGAACA
               70        80        90       100       110       120

              130       140       150       160       170       180
b15878 ACATTAGGACCAAAAGGAATGGACAAAATGTTAGTTGATGAATTAGGAGATATAGTTGTT
       :::::::: :::::::::::::::::::::::::::::::: ::::: :: :: ::  : 
b19214 ACATTAGGTCCAAAAGGAATGGACAAAATGTTAGTTGATGACTTAGGTGACATTGTCATC
              130       140       150       160       170       180

              190       200       210       220       230       240
b15878 ACAAACGACGGGGTTACAATATTAAAAGAAATGAGTGTTGAGCACCCAGCTGCTAAGATG
       ::::::::::: :::::::: :::::::::::::::::::: :::::::: :: :: :::
b19214 ACAAACGACGGTGTTACAATCTTAAAAGAAATGAGTGTTGAACACCCAGCAGCAAAAATG
              190       200       210       220       230       240

              250       260       270       280       290       300
b15878 TTAATTGAAGTTGCTAAAACCCAAGAAAAAGAAGTTGGAGACGGTACAACAACAGCAGTC
       :::::::::::::: ::::: ::::::::::::::::: :::::::::::::::::::::
b19214 TTAATTGAAGTTGCAAAAACACAAGAAAAAGAAGTTGGTGACGGTACAACAACAGCAGTC
              250       260       270       280       290       300

              310       320       330       340       350       360
b15878 GTTATTGCTGGAGAGTTGTTAAGAAAAGCTGAAGAGTTGTTAGACCAAAACATCCACCCA
       ::::::::::: :: :: ::::::::::::::::: :: :::::::::::: : ::::::
b19214 GTTATTGCTGGTGAATTATTAAGAAAAGCTGAAGAATTATTAGACCAAAACGTTCACCCA
              310       320       330       340       350       360

              370       380       390       400       410       420
b15878 TCAGTCATCATCAATGGATACGAGATGGCAAGAAATAAAGCAATTGAAGAGTTAAAGTCA
        :: : :::::::: :::::: :  : :::   :: :::::: : ::::: ::: :    
b19214 ACAATAATCATCAACGGATACCAATTAGCACTCAAAAAAGCATTAGAAGAATTAGAAAAC
              370       380       390       400       410       420

              430       440       450       460       470       480
b15878 GTTGCTAAAGAAGTTAAACCAGATGACACTGAAATGTTAAAGAAAATTGCAATGACATCA
        :::: :  ::  : ::::::::::::  ::::::::: :::::::::::::::::  ::
b19214 ATTGCAATTGACATAAAACCAGATGACGTTGAAATGTTGAAGAAAATTGCAATGACTGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b15878 ATTACTGGTAAAGGAGCAGAGAAAGCAAGAGAGCAGTTAGCTGAAATCGTCGTTGAGGCA
       ::::: :: ::::: :: :: :::::::::::  : ::::: ::: :  : ::::: :: 
b19214 ATTACAGGAAAAGGTGCTGAAAAAGCAAGAGAAAAATTAGCAGAAGTTATTGTTGAAGCT
              490       500       510       520       530       540

              550       560       570       580       590       600
b15878 GTTAGAACAGTTGTTGATGAAGAAACTGGAAAAGTTGATAAGGACTTAATTAAAGTTGAG
       :: ::::::::  :::: ::  :::: :: :::::::: :: :::::::::::  :::::
b19214 GTAAGAACAGTAATTGACGA--AAAC-GGTAAAGTTGACAAAGACTTAATTAAGATTGAG
              550       560          570       580       590       

              610       620       630       640       650       660
b15878 AAGAAGGAAGGAGCTCCAATTGAAGAAACAACCTTAATTAGAGGAGTTGTTATTGACAAA
       ::::: ::::: :: ::::::::: ::::    ::::: : ::: :: ::::: ::::::
b19214 AAGAAAGAAGGTGCACCAATTGAAAAAACTGAATTAATCAAAGGTGTCGTTATCGACAAA
       600       610       620       630       640       650       

              670       680       690       700       710       720
b15878 GAGAGAGTCAACCCACAAATGCCAAAGAAAGTTGAAAACGCTAAGATTGCATTGTTAAAC
       ::::::::::::::::::::::: :::::::: :::::::: :: :::::::::::::::
b19214 GAGAGAGTCAACCCACAAATGCCTAAGAAAGTAGAAAACGCAAAAATTGCATTGTTAAAC
       660       670       680       690       700       710       

              730       740       750       760       770       780
b15878 TGCCCAATTGAAGTCAAAGAAACAGAAACTGATGCAGAGATAAGAATTACTGACCCAGCT
       ::::::::::::::::::::::::::::: :::::::: :: :::::::: :::::::: 
b19214 TGCCCAATTGAAGTCAAAGAAACAGAAACAGATGCAGAAATTAGAATTACAGACCCAGCA
       720       730       740       750       760       770       

              790       800       810       820       830       840
b15878 AAGTTAATGGAGTTCATTGAGCAAGAAGAGAAGATGATTAAAGACATGGTTGAGAAAATA
       :: :::::::: :::::::: ::::::::::: ::: : ::::: :::::::: :  :: 
b19214 AAATTAATGGAATTCATTGAACAAGAAGAGAAAATGTTAAAAGAAATGGTTGACATGATT
       780       790       800       810       820       830       

              850       860       870       880       890       900
b15878 GCTGCTACAGGAGCTAATGTTGTCTTCTGTCAAAAAGGAATTGATGACTTAGCTCAGCAC
          :: :: :: :: :: ::::: :::::::::::::: ::::::::::: :: :: :::
b19214 AAAGCAACCGGTGCAAACGTTGTATTCTGTCAAAAAGGTATTGATGACTTGGCACAACAC
       840       850       860       870       880       890       

              910       920       930       940       950       960
b15878 TACTTAGCTAAGAAAGGAATCTTAGCAGTAAGAAGAGTTAAGAAGTCAGACATGGAGAAA
       :::::::: ::   ::: ::::::::::: :::::::: ::::: :::::::::::::::
b19214 TACTTAGCAAAAGCAGGTATCTTAGCAGTTAGAAGAGTCAAGAAATCAGACATGGAGAAA
       900       910       920       930       940       950       

              970       980       990      1000      1010      1020
b15878 TTAGCTAAAGCTACAGGAGCAAGAATAATAACAAAAATTGATGACTTAACACCAGAAGAC
       ::::: :::::::: :: :: : :::: : ::::: ::  : ::::::::::::::::::
b19214 TTAGCAAAAGCTACTGGTGCTAAAATAGTCACAAACATCAAAGACTTAACACCAGAAGAC
       960       970       980       990      1000      1010       

             1030      1040      1050      1060      1070      1080
b15878 CTTGGAGAAGCTGGATTAGTTGAAGAGAGAAAAGTTGCTGGAGATGCAATGATATTCGTT
        : :: :::::::::::::::::::: :::::::::::::::::::::::::::::::::
b19214 TTAGGTGAAGCTGGATTAGTTGAAGAAAGAAAAGTTGCTGGAGATGCAATGATATTCGTT
      1020      1030      1040      1050      1060      1070       

             1090      1100      1110      1120      1130      1140
b15878 GAAGAGTGCAAGCATCCAAAGGCTGTAACAATCTTAGCAAGAGGTTCAACAGAGCACGTT
       ::::: ::::: :::::::: :: :::::::: ::::  :::::: ::::::: :: :: 
b19214 GAAGACTGCAAACATCCAAAAGCAGTAACAATATTAGTCAGAGGTACAACAGAACATGTA
      1080      1090      1100      1110      1120      1130       

             1150      1160      1170      1180      1190      1200
b15878 GTTGAAGAAGTTGCAAGAGCAATTGATGATGCAATTGGAGTTGTCAAGTGTGCATTAGAA
        : :::::::::::::::::::::::::::::::::::::::::    ::: :: : :::
b19214 ATGGAAGAAGTTGCAAGAGCAATTGATGATGCAATTGGAGTTGTAGCATGTACAATTGAA
      1140      1150      1160      1170      1180      1190       

             1210      1220      1230      1240      1250      1260
b15878 GAAGGTAAGATTGTTGCTGGTGGGGGAGCAACTGAGATAGAATTAGCTAAGAGATTAAGA
       :: :::::::::::::::::::: :::::: : ::  : ::::::::::  ::: : :::
b19214 GACGGTAAGATTGTTGCTGGTGGTGGAGCACCAGAAGTTGAATTAGCTAGAAGAATCAGA
      1200      1210      1220      1230      1240      1250       

             1270      1280      1290      1300      1310      1320
b15878 AAATTCGCTGAAACAGTTGCTGGAAGAGAGCAGTTAGCAGTTAAGGCATTCGCTGATGCT
        : ::::::::::: ::::  :::::::: :: :: ::::: :: :::::::::::::: 
b19214 GACTTCGCTGAAACTGTTGAAGGAAGAGAACAATTGGCAGTCAAAGCATTCGCTGATGCA
      1260      1270      1280      1290      1300      1310       

             1330      1340      1350      1360      1370      1380
b15878 TTAGAAGTAATACCAAGAACATTAGCTGAGAACTCAGGATTAGACCCAATTGACATGCTC
       :::::::: :: :::::::::::::: ::::::::::::::::: ::::::::::   : 
b19214 TTAGAAGTCATTCCAAGAACATTAGCAGAGAACTCAGGATTAGATCCAATTGACACATTA
      1320      1330      1340      1350      1360      1370       

             1390      1400      1410      1420      1430      1440
b15878 GTTAAGTTGAGAGCTGCTCACGAGAAAGAAGGCGGAGAAGTCTACGGATTAGACGTCTTC
       :: :: :: :::::    ::::: : :::   ::::: :      :::::::::::::::
b19214 GTCAACTTAAGAGCAAAACACGAAAGAGA---CGGAGTAACACTTGGATTAGACGTCTTC
      1380      1390      1400         1410      1420      1430    

             1450      1460      1470      1480      1490      1500
b15878 GAAGGAGAAGTAGTTGATATGATGGAGAAAGGGGTTGTTGAACCATTGAAAGTCAAGACA
          :::::::: ::::: ::: : ::: :::: :: ::::::::::: : ::::::::::
b19214 ACTGGAGAAGTCGTTGACATGTTAGAGGAAGGTGTCGTTGAACCATTAAGAGTCAAGACA
         1440      1450      1460      1470      1480      1490    

             1510      1520      1530      1540      1550      1560
b15878 CAGGCAATTGACTCAGCTACAGAGGCATCAGTCATGCTCTTAAGAATCGATGACGTCATA
       :: :::::   :::::: ::::::::: :::  ::: : :: ::::: :: :::::::: 
b19214 CAAGCAATCATCTCAGCAACAGAGGCAACAGAGATGTTGTTGAGAATTGACGACGTCATC
         1500      1510      1520      1530      1540      1550    

             1570      1580      1590      1600      1610          
b15878 GCTGCTGAGAAAGTTAAAGAAGACAAGGGAGGAGAAGGAGGAGACATGGGAG---GAGGT
       :: :: :::::: :  :  :::: :: :    :: ::    :::::::::::     :: 
b19214 GCAGCAGAGAAATTAGACAAAGATAAAGACAAAGGAGATTCAGACATGGGAGACATGGGA
         1560      1570      1580      1590      1600      1610    

      1620         
b15878 GACGAATTTTAA
       : ::: :: :::
b19214 GGCGACTTCTAA
         1620      

</pre>
<hr>
<A name=b20398>
<pre>
>><a onClick="window.open('getRecord.php?id=b20398',
                                'cpndb_record'); return false;" href="getRecord.php?id=b20398" target=_"blank">b20398</a> AGJL01000021 Methanotorris formicicus Mc-S-70 A  (1623 nt)
 initn: 5220 init1: 2954 opt: 5333  Z-score: 151.3  bits: 40.9 E(): 0.0033
banded Smith-Waterman score: 5333; 81.3% identity (81.3% similar) in 1630 nt overlap (4-1629:7-1623)
<p>

                  10        20        30        40        50       
b15878    ATGGCAATGGCAGGAGCACCTATAGTAGTATTACCACAAAATGTTAAAAGATATGTT
             ::::::   ::   :::  :  : ::::::::: :::::::::::::::: :: 
b20398 ATGGCAGCAATG---GGTCAACCAGTTATTGTATTACCAGAAAATGTTAAAAGATACGTA
               10           20        30        40        50       

        60        70        80        90       100       110       
b15878 GGAAGAGACGCTCAAAGAATGAACATCTTAGCAGGTAGAATTATCGCTGAGACAGTTAGA
       :: ::::: :::::::::::::: ::::::::::::::  :::: :::::::::::::::
b20398 GGTAGAGATGCTCAAAGAATGAATATCTTAGCAGGTAGGGTTATTGCTGAGACAGTTAGA
        60        70        80        90       100       110       

       120       130       140       150       160       170       
b15878 ACAACATTAGGACCAAAAGGAATGGACAAAATGTTAGTTGATGAATTAGGAGATATAGTT
       ::::::::::: :::::::::::::::::::::::::::::::: :: :: :: ::  ::
b20398 ACAACATTAGGTCCAAAAGGAATGGACAAAATGTTAGTTGATGATTTGGGGGACATTATT
       120       130       140       150       160       170       

       180       190       200       210       220       230       
b15878 GTTACAAACGACGGGGTTACAATATTAAAAGAAATGAGTGTTGAGCACCCAGCTGCTAAG
        : :::::::: :: :: ::::: :::::::: :::::::::::::::::::: :: :: 
b20398 ATCACAAACGATGGTGTCACAATCTTAAAAGAGATGAGTGTTGAGCACCCAGCAGCAAAA
       180       190       200       210       220       230       

       240       250       260       270       280       290       
b15878 ATGTTAATTGAAGTTGCTAAAACCCAAGAAAAAGAAGTTGGAGACGGTACAACAACAGCA
       ::: : ::::: ::::: :: :: :: ::::::::::: :: :: :: ::::::::::::
b20398 ATGCTTATTGAGGTTGCAAAGACACAGGAAAAAGAAGTCGGGGATGGAACAACAACAGCA
       240       250       260       270       280       290       

       300       310       320       330       340       350       
b15878 GTCGTTATTGCTGGAGAGTTGTTAAGAAAAGCTGAAGAGTTGTTAGACCAAAACATCCAC
       :: :: ::::: ::::: :: :: :::::::: :::::::: :::::::::::: : :::
b20398 GTTGTAATTGCAGGAGAATTATTGAGAAAAGCAGAAGAGTTATTAGACCAAAACGTTCAC
       300       310       320       330       340       350       

       360       370       380       390       400       410       
b15878 CCATCAGTCATCATCAATGGATACGAGATGGCAAGAAATAAAGCAATTGAAGAGTTAAAG
       ::: :: :  ::::::: :::::: :  : :::   :: :: ::: : ::::: ::::: 
b20398 CCAACAATAGTCATCAACGGATACCAATTAGCACTCAAAAAGGCATTAGAAGAATTAAAC
       360       370       380       390       400       410       

       420       430       440       450       460       470       
b15878 TCAGTTGCTAAAGAAGTTAAACCAGATGACACTGAAATGTTAAAGAAAATTGCAATGACA
           :::: :  ::  : ::::::::: : ::::::::::::::::::::::::::::: 
b20398 AACATTGCAATTGACATAAAACCAGATAATACTGAAATGTTAAAGAAAATTGCAATGACT
       420       430       440       450       460       470       

       480       490       500       510       520       530       
b15878 TCAATTACTGGTAAAGGAGCAGAGAAAGCAAGAGAGCAGTTAGCTGAAATCGTCGTTGAG
        ::::::: :: ::::: :: :: :::::::::::  : ::::: :::::: : ::::: 
b20398 GCAATTACAGGAAAAGGTGCTGAAAAAGCAAGAGAAAAATTAGCAGAAATCATTGTTGAA
       480       490       500       510       520       530       

       540       550       560       570       580       590       
b15878 GCAGTTAGAACAGTTGTTGATGAAGAAACTGGAAAAGTTGATAAGGACTTAATTAAAGTT
       ::::: ::::::::  :::::   :::: ::: :::::::::::::::::::::::  ::
b20398 GCAGTAAGAACAGTAATTGAT---GAAAATGGTAAAGTTGATAAGGACTTAATTAAGATT
       540       550          560       570       580       590    

       600       610       620       630       640       650       
b15878 GAGAAGAAGGAAGGAGCTCCAATTGAAGAAACAACCTTAATTAGAGGAGTTGTTATTGAC
       :::::::: ::::: :::::::: ::: : ::    :::::::: :::::::::::::::
b20398 GAGAAGAAAGAAGGGGCTCCAATAGAAAATACTGAATTAATTAGGGGAGTTGTTATTGAC
          600       610       620       630       640       650    

       660       670       680       690       700       710       
b15878 AAAGAGAGAGTCAACCCACAAATGCCAAAGAAAGTTGAAAACGCTAAGATTGCATTGTTA
       ::::: :::::::::::::::::::: :::::: : :::::::: :: :::::::: :: 
b20398 AAAGAAAGAGTCAACCCACAAATGCCTAAGAAAATAGAAAACGCAAAAATTGCATTATTG
          660       670       680       690       700       710    

       720       730       740       750       760       770       
b15878 AACTGCCCAATTGAAGTCAAAGAAACAGAAACTGATGCAGAGATAAGAATTACTGACCCA
       :::::::::::::::::::::::::::::::: :::::::: :: ::::: :: ::::::
b20398 AACTGCCCAATTGAAGTCAAAGAAACAGAAACAGATGCAGAAATTAGAATCACCGACCCA
          720       730       740       750       760       770    

       780       790       800       810       820       830       
b15878 GCTAAGTTAATGGAGTTCATTGAGCAAGAAGAGAAGATGATTAAAGACATGGTTGAGAAA
       :: :: ::::::::::::::::: ::::::::::::::: : ::::: :::::::: :  
b20398 GCAAAATTAATGGAGTTCATTGAACAAGAAGAGAAGATGTTAAAAGAAATGGTTGAAATG
          780       790       800       810       820       830    

       840       850       860       870       880       890       
b15878 ATAGCTGCTACAGGAGCTAATGTTGTCTTCTGTCAAAAAGGAATTGATGACTTAGCTCAG
       ::    :: :: :: :: :::::::: :::::::::::::: :::::::: :: :: :: 
b20398 ATTAAAGCAACTGGTGCAAATGTTGTATTCTGTCAAAAAGGTATTGATGATTTGGCACAA
          840       850       860       870       880       890    

       900       910       920       930       940       950       
b15878 CACTACTTAGCTAAGAAAGGAATCTTAGCAGTAAGAAGAGTTAAGAAGTCAGACATGGAG
       ::::::::::: ::  ::::::: :: ::::: :::::::: ::::: ::::::::::::
b20398 CACTACTTAGCAAAAGAAGGAATATTGGCAGTTAGAAGAGTCAAGAAATCAGACATGGAG
          900       910       920       930       940       950    

       960       970       980       990      1000      1010       
b15878 AAATTAGCTAAAGCTACAGGAGCAAGAATAATAACAAAAATTGATGACTTAACACCAGAA
       :::::: : ::::: :: :: :::: :::::::::::: ::  : :::::::::::::::
b20398 AAATTATCAAAAGCAACTGGTGCAAAAATAATAACAAACATAAAAGACTTAACACCAGAA
          960       970       980       990      1000      1010    

      1020      1030      1040      1050      1060      1070       
b15878 GACCTTGGAGAAGCTGGATTAGTTGAAGAGAGAAAAGTTGCTGGAGATGCAATGATATTC
       ::: : :: :: :::::: ::::::::::::  :::::::::::::: ::::::::::::
b20398 GACTTAGGTGAGGCTGGAGTAGTTGAAGAGAAGAAAGTTGCTGGAGACGCAATGATATTC
         1020      1030      1040      1050      1060      1070    

      1080      1090      1100      1110      1120      1130       
b15878 GTTGAAGAGTGCAAGCATCCAAAGGCTGTAACAATCTTAGCAAGAGGTTCAACAGAGCAC
       :::::::::::::: : :::::: :: :::::::: :: :  :::::  :::::::::: 
b20398 GTTGAAGAGTGCAAACTTCCAAAAGCAGTAACAATATTGGTCAGAGGAACAACAGAGCAT
         1080      1090      1100      1110      1120      1130    

      1140      1150      1160      1170      1180      1190       
b15878 GTTGTTGAAGAAGTTGCAAGAGCAATTGATGATGCAATTGGAGTTGTCAAGTGTGCATTA
       ::  : ::::::::::::::::::::::::::::::::::: :::::    ::: :: : 
b20398 GTAATGGAAGAAGTTGCAAGAGCAATTGATGATGCAATTGGGGTTGTTGCATGTACAATT
         1140      1150      1160      1170      1180      1190    

      1200      1210      1220      1230      1240      1250       
b15878 GAAGAAGGTAAGATTGTTGCTGGTGGGGGAGCAACTGAGATAGAATTAGCTAAGAGATTA
       ::::: :::::::::::::::::::: :::::: : ::  : ::::: ::::::::: : 
b20398 GAAGATGGTAAGATTGTTGCTGGTGGTGGAGCACCAGAAGTTGAATTGGCTAAGAGAATC
         1200      1210      1220      1230      1240      1250    

      1260      1270      1280      1290      1300      1310       
b15878 AGAAAATTCGCTGAAACAGTTGCTGGAAGAGAGCAGTTAGCAGTTAAGGCATTCGCTGAT
       ::: : : ::::::::  ::::  ::::::::::: ::::::::::: ::::::::::::
b20398 AGAGATTACGCTGAAAGTGTTGAAGGAAGAGAGCAATTAGCAGTTAAAGCATTCGCTGAT
         1260      1270      1280      1290      1300      1310    

      1320      1330      1340      1350      1360      1370       
b15878 GCTTTAGAAGTAATACCAAGAACATTAGCTGAGAACTCAGGATTAGACCCAATTGACATG
       :: :::::::: :: :::::::::::::: ::::::::::::::::::::::::::::  
b20398 GCATTAGAAGTTATTCCAAGAACATTAGCAGAGAACTCAGGATTAGACCCAATTGACACA
         1320      1330      1340      1350      1360      1370    

      1380      1390      1400      1410      1420      1430       
b15878 CTCGTTAAGTTGAGAGCTGCTCACGAGAAAGAAGGCGGAGAAGTCTACGGATTAGACGTC
        : :: :: :: :::::    ::::: ::::: :: : :  : :   :::::: :: :::
b20398 TTGGTAAACTTAAGAGCAAAACACGAAAAAGATGGAGTAACACT---CGGATTGGATGTC
         1380      1390      1400      1410         1420      1430 

      1440      1450      1460      1470      1480      1490       
b15878 TTCGAAGGAGAAGTAGTTGATATGATGGAGAAAGGGGTTGTTGAACCATTGAAAGTCAAG
       :::   ::::::::  : :::::: :::: ::::: :::::::: ::::: : ::: :: 
b20398 TTCAGTGGAGAAGTTATCGATATGTTGGAAAAAGGTGTTGTTGAGCCATTAAGAGTTAAA
            1440      1450      1460      1470      1480      1490 

      1500      1510      1520      1530      1540      1550       
b15878 ACACAGGCAATTGACTCAGCTACAGAGGCATCAGTCATGCTCTTAAGAATCGATGACGTC
       ::::: :::::   :::::: ::::: ::: :::  ::: : :: ::::: :::::::::
b20398 ACACAAGCAATCATCTCAGCAACAGAAGCAACAGAAATGTTGTTGAGAATTGATGACGTC
            1500      1510      1520      1530      1540      1550 

      1560      1570      1580      1590      1600      1610       
b15878 ATAGCTGCTGAGAAAGTTAAAGAAGACAAGGGAGGAGAAGGAGGAGACATGGGAGGA---
       :: :: :: :: ::: :  :  :::  ::   ::::::   :::::::::::: :::   
b20398 ATTGCAGCAGAAAAATTAGACAAAGGAAA---AGGAGATTCAGGAGACATGGG-GGATAT
            1560      1570      1580         1590      1600        

          1620         
b15878 -GGTGACGAATTTTAA
        :: :  ::::: :::
b20398 GGGAGGGGAATTCTAA
      1610      1620   

</pre>
<hr>
<A name=b3733>
<pre>
>><a onClick="window.open('getRecord.php?id=b3733',
                                'cpndb_record'); return false;" href="getRecord.php?id=b3733" target=_"blank">b3733</a> E28070 Methanothermococcus thermolithotrophicus   (1635 nt)
 initn: 4835 init1: 3060 opt: 4851  Z-score: 140.9  bits: 39.0 E(): 0.012
banded Smith-Waterman score: 4851; 78.2% identity (78.2% similar) in 1611 nt overlap (7-1614:1-1608)
<p>

               10           20        30        40        50       
b15878 ATGGCAATGGCAG--GAGCA-CCTATAGTAGTATTACCACAAAATGTTAAAAGATATGTT
             :::::::   : :: ::  :::::::::::::  :::: :: ::::::: : : 
b3733        ATGGCAGCTAACCAGCCAGTAGTAGTATTACCTGAAAACGTAAAAAGATTTATG
                     10        20        30        40        50    

        60        70        80        90       100       110       
b15878 GGAAGAGACGCTCAAAGAATGAACATCTTAGCAGGTAGAATTATCGCTGAGACAGTTAGA
       :::::::: :::::::::::::::::::::::::: :::::::::: ::::::::: :::
b3733  GGAAGAGATGCTCAAAGAATGAACATCTTAGCAGGAAGAATTATCGGTGAGACAGTAAGA
           60        70        80        90       100       110    

       120       130       140       150       160       170       
b15878 ACAACATTAGGACCAAAAGGAATGGACAAAATGTTAGTTGATGAATTAGGAGATATAGTT
        : :::::::: ::::: :::::::::::::::::::: ::::: ::::: :: :: :::
b3733  TCCACATTAGGTCCAAAGGGAATGGACAAAATGTTAGTAGATGATTTAGGTGACATTGTT
          120       130       140       150       160       170    

       180       190       200       210       220       230       
b15878 GTTACAAACGACGGGGTTACAATATTAAAAGAAATGAGTGTTGAGCACCCAGCTGCTAAG
       :::::::: ::::: :::::::: ::::::::::::::::: :: :::::::: ::::: 
b3733  GTTACAAATGACGGTGTTACAATCTTAAAAGAAATGAGTGTAGAACACCCAGCAGCTAAA
          180       190       200       210       220       230    

       240       250       260       270       280       290       
b15878 ATGTTAATTGAAGTTGCTAAAACCCAAGAAAAAGAAGTTGGAGACGGTACAACAACAGCA
       ::::::::::::::::: ::::: ::::::::::::::::::::::::::::::::::: 
b3733  ATGTTAATTGAAGTTGCAAAAACACAAGAAAAAGAAGTTGGAGACGGTACAACAACAGCT
          240       250       260       270       280       290    

       300       310       320       330       340       350       
b15878 GTCGTTATTGCTGGAGAGTTGTTAAGAAAAGCTGAAGAGTTGTTAGACCAAAACATCCAC
       :: ::::: ::::: :: :: :::::::::::::: :: ::::::::::::::: : :::
b3733  GTTGTTATCGCTGGTGAATTATTAAGAAAAGCTGAGGAATTGTTAGACCAAAACGTACAC
          300       310       320       330       340       350    

       360       370       380       390       400       410       
b15878 CCATCAGTCATCATCAATGGATACGAGATGGCAAGAAATAAAGCAATTGAAGAGTTAAAG
       ::: :: :  : :: :: :: ::: :: : :::    : ::::::   ::::  ::::: 
b3733  CCAACAATTGTTATTAAAGGTTACCAGTTAGCAGTTCAAAAAGCACAAGAAGTATTAAAA
          360       370       380       390       400       410    

       420       430       440       450       460       470       
b15878 TCAGTTGCTAAAGAAGTTAAACCAGATGACACTGAAATGTTAAAGAAAATTGCAATGACA
         : : :: :  :: :: ::: :::: :: :  ::::: ::: : ::::: :::::::: 
b3733  GAAATAGCAATGGATGTAAAAGCAGACGATAAAGAAATATTACACAAAATAGCAATGACC
          420       430       440       450       460       470    

       480       490       500       510       520       530       
b15878 TCAATTACTGGTAAAGGAGCAGAGAAAGCAAGAGAGCAGTTAGCTGAAATCGTCGTTGAG
       ::::::::::: ::::: ::::: ::::: : :::  : :: :  :::::  ::::::: 
b3733  TCAATTACTGGAAAAGGTGCAGAAAAAGCTAAAGAAAAATTGGGAGAAATGATCGTTGAA
          480       490       500       510       520       530    

       540       550       560       570       580       590       
b15878 GCAGTTAGAACAGTTGTTGATGAAGAAACTGGAAAAGTTGATAAGGACTTAATTAAAGTT
       :: ::::   :::::::    :: :::: :::::::::::: :: :: ::::: ::: : 
b3733  GCTGTTACTGCAGTTGT---AGACGAAAGTGGAAAAGTTGACAAAGATTTAATAAAAATC
          540       550          560       570       580       590 

       600       610       620       630       640       650       
b15878 GAGAAGAAGGAAGGAGCTCCAATTGAAGAAACAACCTTAATTAGAGGAGTTGTTATTGAC
       :::::::: ::::::::: :: :::: :::::    ::::: :  :: ::  : :: :::
b3733  GAGAAGAAAGAAGGAGCTTCAGTTGACGAAACCGAATTAATCAATGGTGTATTAATAGAC
             600       610       620       630       640       650 

       660       670       680       690       700       710       
b15878 AAAGAGAGAGTCAACCCACAAATGCCAAAGAAAGTTGAAAACGCTAAGATTGCATTGTTA
       ::::: ::::: : :::::::::::: :::::  : :::::::: ::::: ::::: :: 
b3733  AAAGAAAGAGTAAGCCCACAAATGCCTAAGAAGATAGAAAACGCAAAGATCGCATTATTG
             660       670       680       690       700       710 

       720       730       740       750       760       770       
b15878 AACTGCCCAATTGAAGTCAAAGAAACAGAAACTGATGCAGAGATAAGAATTACTGACCCA
       ::::::::::: ::::: :::::::::::::: :::::::: :: ::::: :: :: :: 
b3733  AACTGCCCAATCGAAGTTAAAGAAACAGAAACAGATGCAGAAATTAGAATCACAGATCCT
             720       730       740       750       760       770 

       780       790       800       810       820       830       
b15878 GCTAAGTTAATGGAGTTCATTGAGCAAGAAGAGAAGATGATTAAAGACATGGTTGAGAAA
        : :: :::::::: :::::::: :::::::: :: ::: : ::::: ::::: :: :  
b3733  ACAAAATTAATGGAATTCATTGAACAAGAAGAAAAAATGTTAAAAGATATGGTAGATACC
             780       790       800       810       820       830 

       840       850       860       870       880       890       
b15878 ATAGCTGCTACAGGAGCTAATGTTGTCTTCTGTCAAAAAGGAATTGATGACTTAGCTCAG
       :::   ::: ::::::: :: ::: : ::::: :::::::: :: ::::::::::: :: 
b3733  ATAAAAGCTTCAGGAGCAAACGTTTTATTCTGCCAAAAAGGTATCGATGACTTAGCACAA
             840       850       860       870       880       890 

       900       910       920       930       940       950       
b15878 CACTACTTAGCTAAGAAAGGAATCTTAGCAGTAAGAAGAGTTAAGAAGTCAGACATGGAG
       ::::::::::: ::  :::::::: : :::::::::::::: :: :: ::::::::::: 
b3733  CACTACTTAGCAAAAGAAGGAATCCTTGCAGTAAGAAGAGTCAAAAAATCAGACATGGAA
             900       910       920       930       940       950 

       960       970       980       990      1000      1010       
b15878 AAATTAGCTAAAGCTACAGGAGCAAGAATAATAACAAAAATTGATGACTTAACACCAGAA
       :::::: : :::::::: ::::: :   :: ::::::: ::  : ::::::: : : :::
b3733  AAATTATCAAAAGCTACTGGAGCTAACGTAGTAACAAACATCAAAGACTTAAAAGCTGAA
             960       970       980       990      1000      1010 

      1020      1030      1040      1050      1060      1070       
b15878 GACCTTGGAGAAGCTGGATTAGTTGAAGAGAGAAAAGTTGCTGGAGATGCAATGATATTC
       ::  : :: ::::: ::: : :: ::::: :::::: :::::::::: :::::::: :::
b3733  GATTTAGGGGAAGCAGGAATTGTAGAAGAAAGAAAAATTGCTGGAGACGCAATGATCTTC
            1020      1030      1040      1050      1060      1070 

      1080      1090      1100      1110      1120      1130       
b15878 GTTGAAGAGTGCAAGCATCCAAAGGCTGTAACAATCTTAGCAAGAGGTTCAACAGAGCAC
       :::::::: ::::: :::::::: :: :::::::: :::  ::::::: ::::::: :::
b3733  GTTGAAGAATGCAAACATCCAAAAGCAGTAACAATGTTAATAAGAGGTACAACAGAACAC
            1080      1090      1100      1110      1120      1130 

      1140      1150      1160      1170      1180      1190       
b15878 GTTGTTGAAGAAGTTGCAAGAGCAATTGATGATGCAATTGGAGTTGTCAAGTGTGCATTA
       ::  :::::::::: ::::::::  : :::::::: :::::::::::    ::: :  : 
b3733  GTAATTGAAGAAGTAGCAAGAGCTGTAGATGATGCTATTGGAGTTGTAGCATGTACCATC
            1140      1150      1160      1170      1180      1190 

      1200      1210      1220      1230      1240      1250       
b15878 GAAGAAGGTAAGATTGTTGCTGGTGGGGGAGCAACTGAGATAGAATTAGCTAAGAGATTA
       ::::: :::::::: ::::: ::::: :::::  : :::::::::::::: : :: ::::
b3733  GAAGACGGTAAGATCGTTGCAGGTGGTGGAGCTGCAGAGATAGAATTAGCAATGAAATTA
            1200      1210      1220      1230      1240      1250 

      1260      1270      1280      1290      1300      1310       
b15878 AGAAAATTCGCTGAAACAGTTGCTGGAAGAGAGCAGTTAGCAGTTAAGGCATTCGCTGAT
       ::: : : :::::::  :::   ::::::::: :: :: :::::::  ::::: :: :::
b3733  AGAGACTACGCTGAAGGAGTAAGTGGAAGAGAACAATTGGCAGTTAGAGCATTTGCAGAT
            1260      1270      1280      1290      1300      1310 

      1320      1330      1340      1350      1360      1370       
b15878 GCTTTAGAAGTAATACCAAGAACATTAGCTGAGAACTCAGGATTAGACCCAATTGACATG
       :::::::::::: : :::::::::::::: :: ::: :::: :::::  ::::::: :::
b3733  GCTTTAGAAGTAGTTCCAAGAACATTAGCAGAAAACGCAGGTTTAGATGCAATTGAAATG
            1320      1330      1340      1350      1360      1370 

      1380      1390      1400      1410      1420      1430       
b15878 CTCGTTAAGTTGAGAGCTGCTCACGAGAAAGAAGGCGGAGAAGTCTACGGATTAGACGTC
       :::::::: :: ::::::   :: :   ::: :      : :  ::: :: ::: :::::
b3733  CTCGTTAAATTAAGAGCTAAACATGCAGAAGGAAATAACGCATACTATGGGTTAAACGTC
            1380      1390      1400      1410      1420      1430 

      1440      1450      1460      1470      1480      1490       
b15878 TTCGAAGGAGAAGTAGTTGATATGATGGAGAAAGGGGTTGTTGAACCATTGAAAGTCAAG
       :::  ::: :: :: :   : ::::  :: :: :: :: ::::::::::: : ::: :: 
b3733  TTCACAGGCGATGTTGAAAACATGACTGAAAACGGAGTAGTTGAACCATTAAGAGTTAAA
            1440      1450      1460      1470      1480      1490 

      1500      1510      1520      1530      1540      1550       
b15878 ACACAGGCAATTGACTCAGCTACAGAGGCATCAGTCATGCTCTTAAGAATCGATGACGTC
       :: :: :: ::  : ::::::::::: ::  :::  ::: : :::::::: :: :: :: 
b3733  ACTCAAGCTATACAATCAGCTACAGAAGCTACAGAAATGTTATTAAGAATAGACGATGTA
            1500      1510      1520      1530      1540      1550 

      1560      1570      1580      1590      1600      1610       
b15878 ATAGCTGCTGAGAAAGTTAAAGAAGACAAGGGAGGAGAAGGAGGAGACATGGGAGGAGGT
       :: ::::: :: ::: : :  :  :     :: :::::    ::::::::::: :::   
b3733  ATCGCTGCAGAAAAATTAAGCGGCGGATCTGGCGGAGACATGGGAGACATGGGCGGAATG
            1560      1570      1580      1590      1600      1610 

      1620                     
b15878 GACGAATTTTAA            
                               
b3733  GGAGGTATGGGCGGAATGATGTAA
            1620      1630     

</pre>
<hr>
<A name=b3649>
<pre>
>><a onClick="window.open('getRecord.php?id=b3649',
                                'cpndb_record'); return false;" href="getRecord.php?id=b3649" target=_"blank">b3649</a> AB015435 Methanothermococcus thermolithotrophicu  (1635 nt)
 initn: 4835 init1: 3060 opt: 4851  Z-score: 140.9  bits: 39.0 E(): 0.012
banded Smith-Waterman score: 4851; 78.2% identity (78.2% similar) in 1611 nt overlap (7-1614:1-1608)
<p>

               10           20        30        40        50       
b15878 ATGGCAATGGCAG--GAGCA-CCTATAGTAGTATTACCACAAAATGTTAAAAGATATGTT
             :::::::   : :: ::  :::::::::::::  :::: :: ::::::: : : 
b3649        ATGGCAGCTAACCAGCCAGTAGTAGTATTACCTGAAAACGTAAAAAGATTTATG
                     10        20        30        40        50    

        60        70        80        90       100       110       
b15878 GGAAGAGACGCTCAAAGAATGAACATCTTAGCAGGTAGAATTATCGCTGAGACAGTTAGA
       :::::::: :::::::::::::::::::::::::: :::::::::: ::::::::: :::
b3649  GGAAGAGATGCTCAAAGAATGAACATCTTAGCAGGAAGAATTATCGGTGAGACAGTAAGA
           60        70        80        90       100       110    

       120       130       140       150       160       170       
b15878 ACAACATTAGGACCAAAAGGAATGGACAAAATGTTAGTTGATGAATTAGGAGATATAGTT
        : :::::::: ::::: :::::::::::::::::::: ::::: ::::: :: :: :::
b3649  TCCACATTAGGTCCAAAGGGAATGGACAAAATGTTAGTAGATGATTTAGGTGACATTGTT
          120       130       140       150       160       170    

       180       190       200       210       220       230       
b15878 GTTACAAACGACGGGGTTACAATATTAAAAGAAATGAGTGTTGAGCACCCAGCTGCTAAG
       :::::::: ::::: :::::::: ::::::::::::::::: :: :::::::: ::::: 
b3649  GTTACAAATGACGGTGTTACAATCTTAAAAGAAATGAGTGTAGAACACCCAGCAGCTAAA
          180       190       200       210       220       230    

       240       250       260       270       280       290       
b15878 ATGTTAATTGAAGTTGCTAAAACCCAAGAAAAAGAAGTTGGAGACGGTACAACAACAGCA
       ::::::::::::::::: ::::: ::::::::::::::::::::::::::::::::::: 
b3649  ATGTTAATTGAAGTTGCAAAAACACAAGAAAAAGAAGTTGGAGACGGTACAACAACAGCT
          240       250       260       270       280       290    

       300       310       320       330       340       350       
b15878 GTCGTTATTGCTGGAGAGTTGTTAAGAAAAGCTGAAGAGTTGTTAGACCAAAACATCCAC
       :: ::::: ::::: :: :: :::::::::::::: :: ::::::::::::::: : :::
b3649  GTTGTTATCGCTGGTGAATTATTAAGAAAAGCTGAGGAATTGTTAGACCAAAACGTACAC
          300       310       320       330       340       350    

       360       370       380       390       400       410       
b15878 CCATCAGTCATCATCAATGGATACGAGATGGCAAGAAATAAAGCAATTGAAGAGTTAAAG
       ::: :: :  : :: :: :: ::: :: : :::    : ::::::   ::::  ::::: 
b3649  CCAACAATTGTTATTAAAGGTTACCAGTTAGCAGTTCAAAAAGCACAAGAAGTATTAAAA
          360       370       380       390       400       410    

       420       430       440       450       460       470       
b15878 TCAGTTGCTAAAGAAGTTAAACCAGATGACACTGAAATGTTAAAGAAAATTGCAATGACA
         : : :: :  :: :: ::: :::: :: :  ::::: ::: : ::::: :::::::: 
b3649  GAAATAGCAATGGATGTAAAAGCAGACGATAAAGAAATATTACACAAAATAGCAATGACC
          420       430       440       450       460       470    

       480       490       500       510       520       530       
b15878 TCAATTACTGGTAAAGGAGCAGAGAAAGCAAGAGAGCAGTTAGCTGAAATCGTCGTTGAG
       ::::::::::: ::::: ::::: ::::: : :::  : :: :  :::::  ::::::: 
b3649  TCAATTACTGGAAAAGGTGCAGAAAAAGCTAAAGAAAAATTGGGAGAAATGATCGTTGAA
          480       490       500       510       520       530    

       540       550       560       570       580       590       
b15878 GCAGTTAGAACAGTTGTTGATGAAGAAACTGGAAAAGTTGATAAGGACTTAATTAAAGTT
       :: ::::   :::::::    :: :::: :::::::::::: :: :: ::::: ::: : 
b3649  GCTGTTACTGCAGTTGT---AGACGAAAGTGGAAAAGTTGACAAAGATTTAATAAAAATC
          540       550          560       570       580       590 

       600       610       620       630       640       650       
b15878 GAGAAGAAGGAAGGAGCTCCAATTGAAGAAACAACCTTAATTAGAGGAGTTGTTATTGAC
       :::::::: ::::::::: :: :::: :::::    ::::: :  :: ::  : :: :::
b3649  GAGAAGAAAGAAGGAGCTTCAGTTGACGAAACCGAATTAATCAATGGTGTATTAATAGAC
             600       610       620       630       640       650 

       660       670       680       690       700       710       
b15878 AAAGAGAGAGTCAACCCACAAATGCCAAAGAAAGTTGAAAACGCTAAGATTGCATTGTTA
       ::::: ::::: : :::::::::::: :::::  : :::::::: ::::: ::::: :: 
b3649  AAAGAAAGAGTAAGCCCACAAATGCCTAAGAAGATAGAAAACGCAAAGATCGCATTATTG
             660       670       680       690       700       710 

       720       730       740       750       760       770       
b15878 AACTGCCCAATTGAAGTCAAAGAAACAGAAACTGATGCAGAGATAAGAATTACTGACCCA
       ::::::::::: ::::: :::::::::::::: :::::::: :: ::::: :: :: :: 
b3649  AACTGCCCAATCGAAGTTAAAGAAACAGAAACAGATGCAGAAATTAGAATCACAGATCCT
             720       730       740       750       760       770 

       780       790       800       810       820       830       
b15878 GCTAAGTTAATGGAGTTCATTGAGCAAGAAGAGAAGATGATTAAAGACATGGTTGAGAAA
        : :: :::::::: :::::::: :::::::: :: ::: : ::::: ::::: :: :  
b3649  ACAAAATTAATGGAATTCATTGAACAAGAAGAAAAAATGTTAAAAGATATGGTAGATACC
             780       790       800       810       820       830 

       840       850       860       870       880       890       
b15878 ATAGCTGCTACAGGAGCTAATGTTGTCTTCTGTCAAAAAGGAATTGATGACTTAGCTCAG
       :::   ::: ::::::: :: ::: : ::::: :::::::: :: ::::::::::: :: 
b3649  ATAAAAGCTTCAGGAGCAAACGTTTTATTCTGCCAAAAAGGTATCGATGACTTAGCACAA
             840       850       860       870       880       890 

       900       910       920       930       940       950       
b15878 CACTACTTAGCTAAGAAAGGAATCTTAGCAGTAAGAAGAGTTAAGAAGTCAGACATGGAG
       ::::::::::: ::  :::::::: : :::::::::::::: :: :: ::::::::::: 
b3649  CACTACTTAGCAAAAGAAGGAATCCTTGCAGTAAGAAGAGTCAAAAAATCAGACATGGAA
             900       910       920       930       940       950 

       960       970       980       990      1000      1010       
b15878 AAATTAGCTAAAGCTACAGGAGCAAGAATAATAACAAAAATTGATGACTTAACACCAGAA
       :::::: : :::::::: ::::: :   :: ::::::: ::  : ::::::: : : :::
b3649  AAATTATCAAAAGCTACTGGAGCTAACGTAGTAACAAACATCAAAGACTTAAAAGCTGAA
             960       970       980       990      1000      1010 

      1020      1030      1040      1050      1060      1070       
b15878 GACCTTGGAGAAGCTGGATTAGTTGAAGAGAGAAAAGTTGCTGGAGATGCAATGATATTC
       ::  : :: ::::: ::: : :: ::::: :::::: :::::::::: :::::::: :::
b3649  GATTTAGGGGAAGCAGGAATTGTAGAAGAAAGAAAAATTGCTGGAGACGCAATGATCTTC
            1020      1030      1040      1050      1060      1070 

      1080      1090      1100      1110      1120      1130       
b15878 GTTGAAGAGTGCAAGCATCCAAAGGCTGTAACAATCTTAGCAAGAGGTTCAACAGAGCAC
       :::::::: ::::: :::::::: :: :::::::: :::  ::::::: ::::::: :::
b3649  GTTGAAGAATGCAAACATCCAAAAGCAGTAACAATGTTAATAAGAGGTACAACAGAACAC
            1080      1090      1100      1110      1120      1130 

      1140      1150      1160      1170      1180      1190       
b15878 GTTGTTGAAGAAGTTGCAAGAGCAATTGATGATGCAATTGGAGTTGTCAAGTGTGCATTA
       ::  :::::::::: ::::::::  : :::::::: :::::::::::    ::: :  : 
b3649  GTAATTGAAGAAGTAGCAAGAGCTGTAGATGATGCTATTGGAGTTGTAGCATGTACCATC
            1140      1150      1160      1170      1180      1190 

      1200      1210      1220      1230      1240      1250       
b15878 GAAGAAGGTAAGATTGTTGCTGGTGGGGGAGCAACTGAGATAGAATTAGCTAAGAGATTA
       ::::: :::::::: ::::: ::::: :::::  : :::::::::::::: : :: ::::
b3649  GAAGACGGTAAGATCGTTGCAGGTGGTGGAGCTGCAGAGATAGAATTAGCAATGAAATTA
            1200      1210      1220      1230      1240      1250 

      1260      1270      1280      1290      1300      1310       
b15878 AGAAAATTCGCTGAAACAGTTGCTGGAAGAGAGCAGTTAGCAGTTAAGGCATTCGCTGAT
       ::: : : :::::::  :::   ::::::::: :: :: :::::::  ::::: :: :::
b3649  AGAGACTACGCTGAAGGAGTAAGTGGAAGAGAACAATTGGCAGTTAGAGCATTTGCAGAT
            1260      1270      1280      1290      1300      1310 

      1320      1330      1340      1350      1360      1370       
b15878 GCTTTAGAAGTAATACCAAGAACATTAGCTGAGAACTCAGGATTAGACCCAATTGACATG
       :::::::::::: : :::::::::::::: :: ::: :::: :::::  ::::::: :::
b3649  GCTTTAGAAGTAGTTCCAAGAACATTAGCAGAAAACGCAGGTTTAGATGCAATTGAAATG
            1320      1330      1340      1350      1360      1370 

      1380      1390      1400      1410      1420      1430       
b15878 CTCGTTAAGTTGAGAGCTGCTCACGAGAAAGAAGGCGGAGAAGTCTACGGATTAGACGTC
       :::::::: :: ::::::   :: :   ::: :      : :  ::: :: ::: :::::
b3649  CTCGTTAAATTAAGAGCTAAACATGCAGAAGGAAATAACGCATACTATGGGTTAAACGTC
            1380      1390      1400      1410      1420      1430 

      1440      1450      1460      1470      1480      1490       
b15878 TTCGAAGGAGAAGTAGTTGATATGATGGAGAAAGGGGTTGTTGAACCATTGAAAGTCAAG
       :::  ::: :: :: :   : ::::  :: :: :: :: ::::::::::: : ::: :: 
b3649  TTCACAGGCGATGTTGAAAACATGACTGAAAACGGAGTAGTTGAACCATTAAGAGTTAAA
            1440      1450      1460      1470      1480      1490 

      1500      1510      1520      1530      1540      1550       
b15878 ACACAGGCAATTGACTCAGCTACAGAGGCATCAGTCATGCTCTTAAGAATCGATGACGTC
       :: :: :: ::  : ::::::::::: ::  :::  ::: : :::::::: :: :: :: 
b3649  ACTCAAGCTATACAATCAGCTACAGAAGCTACAGAAATGTTATTAAGAATAGACGATGTA
            1500      1510      1520      1530      1540      1550 

      1560      1570      1580      1590      1600      1610       
b15878 ATAGCTGCTGAGAAAGTTAAAGAAGACAAGGGAGGAGAAGGAGGAGACATGGGAGGAGGT
       :: ::::: :: ::: : :  :  :     :: :::::    ::::::::::: :::   
b3649  ATCGCTGCAGAAAAATTAAGCGGCGGATCTGGCGGAGACATGGGAGACATGGGCGGAATG
            1560      1570      1580      1590      1600      1610 

      1620                     
b15878 GACGAATTTTAA            
                               
b3649  GGAGGTATGGGCGGAATGATGTAA
            1620      1630     

</pre>
<hr>
<A name=b17709>
<pre>
>><a onClick="window.open('getRecord.php?id=b17709',
                                'cpndb_record'); return false;" href="getRecord.php?id=b17709" target=_"blank">b17709</a> CP002792 Methanothermococcus okinawensis IH1     (1638 nt)
 initn: 4558 init1: 2915 opt: 4735  Z-score: 138.3  bits: 38.5 E(): 0.017
banded Smith-Waterman score: 4735; 77.3% identity (77.3% similar) in 1628 nt overlap (7-1624:1-1622)
<p>

               10           20        30        40        50       
b15878 ATGGCAATGGCAGGAG--CA-CCTATAGTAGTATTACCACAAAATGTTAAAAGATATGTT
             ::::::: ::  :: ::  :::: ::::::::: ::::::: ::::::::: : 
b17709       ATGGCAGCAGGTCAGCCAGTAGTTGTATTACCAGAAAATGTAAAAAGATATATG
                     10        20        30        40        50    

        60        70        80        90       100       110       
b15878 GGAAGAGACGCTCAAAGAATGAACATCTTAGCAGGTAGAATTATCGCTGAGACAGTTAGA
       :::::::: ::::::::::::::::: :::::::: ::::: :: ::::: :: :: :: 
b17709 GGAAGAGATGCTCAAAGAATGAACATATTAGCAGGAAGAATCATAGCTGAAACCGTAAGG
           60        70        80        90       100       110    

       120       130       140       150       160       170       
b15878 ACAACATTAGGACCAAAAGGAATGGACAAAATGTTAGTTGATGAATTAGGAGATATAGTT
        : ::: :::::::::: :::::::::::::::::::::::::: :: :: :: :: :: 
b17709 TCCACACTAGGACCAAAGGGAATGGACAAAATGTTAGTTGATGATTTGGGGGACATTGTA
          120       130       140       150       160       170    

       180       190       200       210       220       230       
b15878 GTTACAAACGACGGGGTTACAATATTAAAAGAAATGAGTGTTGAGCACCCAGCTGCTAAG
       :::::::: ::::: :: ::::::::::::::::::::::: :: :: :::::::: :: 
b17709 GTTACAAATGACGGTGTAACAATATTAAAAGAAATGAGTGTAGAACATCCAGCTGCAAAA
          180       190       200       210       220       230    

       240       250       260       270       280       290       
b15878 ATGTTAATTGAAGTTGCTAAAACCCAAGAAAAAGAAGTTGGAGACGGTACAACAACAGCA
       :::::::: :::::::: ::::::::::::::::: :: :: :: :: ::::::::::::
b17709 ATGTTAATCGAAGTTGCAAAAACCCAAGAAAAAGAGGTAGGGGATGGAACAACAACAGCA
          240       250       260       270       280       290    

       300       310       320       330       340       350       
b15878 GTCGTTATTGCTGGAGAGTTGTTAAGAAAAGCTGAAGAGTTGTTAGACCAAAACATCCAC
       :: ::::: ::::: :: :: :::::::::::::: :: ::  : ::::: ::  : :: 
b17709 GTAGTTATAGCTGGTGAATTATTAAGAAAAGCTGAGGAATTACTCGACCAGAATGTTCAT
          300       310       320       330       340       350    

       360       370       380       390       400       410       
b15878 CCATCAGTCATCATCAATGGATACGAGATGGCAAGAAATAAAGCAATTGAAGAGTTAAAG
       ::: :: :  : ::::: :::::: :: : :::    : ::::     :::   ::::: 
b17709 CCAACAATTGTTATCAAAGGATACCAGTTAGCACTTGAAAAAGTTCAGGAAATATTAAAA
          360       370       380       390       400       410    

       420       430       440       450       460       470       
b15878 TCAGTTGCTAAAGAAGTTAAACCAGATGACACTGAAATGTTAAAGAAAATTGCAATGACA
         : : :::   :: :: ::: : :::::::  ::::::::::::::::: :::::::::
b17709 GAAATAGCTGTTGATGTAAAAGCTGATGACAAAGAAATGTTAAAGAAAATAGCAATGACA
          420       430       440       450       460       470    

       480       490       500       510       520       530       
b15878 TCAATTACTGGTAAAGGAGCAGAGAAAGCAAGAGAGCAGTTAGCTGAAATCGTCGTTGAG
       ::::: :: :: ::::: :: :: ::::: :  ::  : :: :  :: ::  : ::::: 
b17709 TCAATCACAGGAAAAGGTGCTGAAAAAGCTAAGGAAAAATTGGGCGATATTATTGTTGAA
          480       490       500       510       520       530    

       540       550       560       570       580       590       
b15878 GCAGTTAGAACAGTTGTTGATGAAGAAACTGGAAAAGTTGATAAGGACTTAATTAAAGTT
       ::::::: : :::::::::::::  :::: :: ::: : ::::: :: ::::: ::::: 
b17709 GCAGTTACAGCAGTTGTTGATGA--AAAC-GGTAAAATCGATAAAGATTTAATAAAAGTA
          540       550         560        570       580       590 

       600       610       620       630       640       650       
b15878 GAGAAGAAGGAAGGAGCTCCAATTGAAGAAACAACCTTAATTAGAGGAGTTGTTATTGAC
       ::::: :: :::::: :  :: :::: ::::::   ::::: :: ::::: :: :: :: 
b17709 GAGAAAAAAGAAGGAACATCAGTTGATGAAACAGAATTAATCAGGGGAGTAGTAATAGAT
             600       610       620       630       640       650 

       660       670       680       690       700       710       
b15878 AAAGAGAGAGTCAACCCACAAATGCCAAAGAAAGTTGAAAACGCTAAGATTGCATTGTTA
       ::::: ::::: :: ::::: ::::: :::::::: ::::: :: :: :: ::::: :: 
b17709 AAAGAAAGAGTAAATCCACAGATGCCTAAGAAAGTAGAAAATGCAAAAATCGCATTATTG
             660       670       680       690       700       710 

       720       730       740       750       760       770       
b15878 AACTGCCCAATTGAAGTCAAAGAAACAGAAACTGATGCAGAGATAAGAATTACTGACCCA
       ::::::::::::::::: :::::::::::::: :::::  : ::::: :: :: ::::: 
b17709 AACTGCCCAATTGAAGTTAAAGAAACAGAAACAGATGCTAAAATAAGCATAACCGACCCT
             720       730       740       750       760       770 

       780       790       800       810       820       830       
b15878 GCTAAGTTAATGGAGTTCATTGAGCAAGAAGAGAAGATGATTAAAGACATGGTTGAGAAA
        : ::: : ::::: ::::: :: :::::::: :: ::: : ::::::::::::::  ::
b17709 TCAAAGATGATGGAATTCATCGAACAAGAAGAAAAAATGTTAAAAGACATGGTTGATGAA
             780       790       800       810       820       830 

       840       850       860       870       880       890       
b15878 ATAGCTGCTACAGGAGCTAATGTTGTCTTCTGTCAAAAAGGAATTGATGACTTAGCTCAG
       :::   ::  : :: :: :::::::: ::::::::::::::::::::::: :::::::::
b17709 ATAAAAGCATCTGGTGCAAATGTTGTATTCTGTCAAAAAGGAATTGATGATTTAGCTCAG
             840       850       860       870       880       890 

       900       910       920       930       940       950       
b15878 CACTACTTAGCTAAGAAAGGAATCTTAGCAGTAAGAAGAGTTAAGAAGTCAGACATGGAG
       :::::  : :: ::    :: ::::::::::::::::::::::: ::::::::::: :: 
b17709 CACTATCTTGCAAAAGCTGGCATCTTAGCAGTAAGAAGAGTTAAAAAGTCAGACATAGAA
             900       910       920       930       940       950 

       960       970       980       990      1000      1010       
b15878 AAATTAGCTAAAGCTACAGGAGCAAGAATAATAACAAAAATTGATGACTTAACACCAGAA
       ::: :  : ::::: ::::::::::  :: :: ::::: ::: : ::::::::: :::::
b17709 AAACTTTCAAAAGCAACAGGAGCAAATATTATTACAAACATTAAAGACTTAACAGCAGAA
             960       970       980       990      1000      1010 

      1020      1030      1040      1050      1060      1070       
b15878 GACCTTGGAGAAGCTGGATTAGTTGAAGAGAGAAAAGTTGCTGGAGATGCAATGATATTC
       ::: : :::::::::::: : ::    ::   ::: :::::::: :: ::::::::::: 
b17709 GACTTAGGAGAAGCTGGACTTGTATCCGAAGAAAAGGTTGCTGGCGACGCAATGATATTT
            1020      1030      1040      1050      1060      1070 

      1080      1090      1100      1110      1120      1130       
b15878 GTTGAAGAGTGCAAGCATCCAAAGGCTGTAACAATCTTAGCAAGAGGTTCAACAGAGCAC
       ::: :::: ::::: :::::::: :: :::::::: :: ::::::::  ::::::: :: 
b17709 GTTAAAGAATGCAAACATCCAAAAGCGGTAACAATATTGGCAAGAGGCACAACAGAACAT
            1080      1090      1100      1110      1120      1130 

      1140      1150      1160      1170      1180      1190       
b15878 GTTGTTGAAGAAGTTGCAAGAGCAATTGATGATGCAATTGGAGTTGTCAAGTGTGCATTA
       ::::: :: ::::: :::::::: :: :: :::::::: ::::::::    ::  :  ::
b17709 GTTGTAGATGAAGTAGCAAGAGCTATCGACGATGCAATAGGAGTTGTAGCATGCACCATA
            1140      1150      1160      1170      1180      1190 

      1200      1210      1220      1230      1240      1250       
b15878 GAAGAAGGTAAGATTGTTGCTGGTGGGGGAGCAACTGAGATAGAATTAGCTAAGAGATTA
       ::::: ::::: :::::::::::::: :::::: : :: ::::::::::::: :::::::
b17709 GAAGATGGTAAAATTGTTGCTGGTGGTGGAGCAGCAGAAATAGAATTAGCTATGAGATTA
            1200      1210      1220      1230      1240      1250 

      1260      1270      1280      1290      1300      1310       
b15878 AGAAAATTCGCTGAAACAGTTGCTGGAAGAGAGCAGTTAGCAGTTAAGGCATTCGCTGAT
       ::: : : ::: :: :::::    :::::::: :::::::::::::  : ::: :: :::
b17709 AGAGACTACGCAGACACAGTAAGCGGAAGAGAACAGTTAGCAGTTAGAGGATTTGCAGAT
            1260      1270      1280      1290      1300      1310 

      1320      1330      1340      1350      1360      1370       
b15878 GCTTTAGAAGTAATACCAAGAACATTAGCTGAGAACTCAGGATTAGACCCAATTGACATG
       :: ::::::::::: :::::::: :: :: :: ::  : :: :::::  : :: :: :::
b17709 GCATTAGAAGTAATTCCAAGAACCTTGGCAGAAAATGCTGGTTTAGATGCTATCGAAATG
            1320      1330      1340      1350      1360      1370 

      1380      1390      1400      1410      1420      1430       
b15878 CTCGTTAAGTTGAGAGCTGCTCACGAGAAAGAAGGCGGAGAAGTCTACGGATTAGACGTC
       ::::: ::  : ::::::   ::::  : :::::::   : :   ::::::::: : :: 
b17709 CTCGTAAATCTTAGAGCTAAACACGCAACAGAAGGCAATGCAAGATACGGATTAAATGTA
            1380      1390      1400      1410      1420      1430 

      1440      1450      1460      1470      1480      1490       
b15878 TTCGAAGGAGAAGTAGTTGATATGATGGAGAAAGGGGTTGTTGAACCATTGAAAGTCAAG
       ::   ::::::::: :  :::::::  :: :: :: ::::: :: ::::: : ::: :: 
b17709 TTTTCAGGAGAAGTTGAAGATATGAGTGAAAATGGAGTTGTAGAGCCATTAAGAGTTAAA
            1440      1450      1460      1470      1480      1490 

      1500      1510      1520      1530      1540      1550       
b15878 ACACAGGCAATTGACTCAGCTACAGAGGCATCAGTCATGCTCTTAAGAATCGATGACGTC
       ::::: :: ::  : :::::::: ::: ::::::  ::: : :::::::: ::::: :: 
b17709 ACACAAGCTATACAATCAGCTACTGAGTCATCAGAAATGTTATTAAGAATAGATGATGTA
            1500      1510      1520      1530      1540      1550 

      1560      1570            1580      1590      1600      1610 
b15878 ATAGCTGCTGAGAAA------GTTAAAGAAGACAAGGGAGGAGAAGGAGGAGACATGGGA
       ::::::::::: :::      : :::::::: :   :: :: ::    :: :  ::::::
b17709 ATAGCTGCTGAAAAATTAAGCGGTAAAGAAGCC---GGTGGCGACATGGGCGGAATGGGA
            1560      1570      1580         1590      1600        

             1620                    
b15878 GG-AGGTGACGAATTTTAA           
       :: : : :: : ::                
b17709 GGTATGGGAGGTATGGGCGGAATGATGTAA
     1610      1620      1630        

</pre>
<hr>
<A name=b15782>
<pre>
>><a onClick="window.open('getRecord.php?id=b15782',
                                'cpndb_record'); return false;" href="getRecord.php?id=b15782" target=_"blank">b15782</a> CP000867 Methanococcus maripaludis C6            (1629 nt)
 initn: 4286 init1: 2680 opt: 4447  Z-score: 132.2  bits: 37.4 E(): 0.038
banded Smith-Waterman score: 4447; 75.9% identity (75.9% similar) in 1601 nt overlap (16-1614:4-1593)
<p>

               10        20        30        40        50        60
b15878 ATGGCAATGGCAGGAGCACCTATAGTAGTATTACCACAAAATGTTAAAAGATATGTTGGA
                      ::::    :: ::: :::::  ::::  : :: :::::  : :::
b15782             ATGGCACAACCAGGAGTTTTACCTGAAAACATGAAGAGATACATGGGA
                           10        20        30        40        

               70        80        90       100       110       120
b15878 AGAGACGCTCAAAGAATGAACATCTTAGCAGGTAGAATTATCGCTGAGACAGTTAGAACA
       ::::: :::::::::::::::::::::::::: ::::: ::::: :: ::::: ::: ::
b15782 AGAGATGCTCAAAGAATGAACATCTTAGCAGGAAGAATCATCGCAGAAACAGTAAGATCA
       50        60        70        80        90       100        

              130       140       150       160       170       180
b15878 ACATTAGGACCAAAAGGAATGGACAAAATGTTAGTTGATGAATTAGGAGATATAGTTGTT
       ::: : :: ::::::::::::::::::::::::::::: :: ::::::::  ::::::::
b15782 ACACTCGGTCCAAAAGGAATGGACAAAATGTTAGTTGACGACTTAGGAGACGTAGTTGTT
      110       120       130       140       150       160        

              190       200       210       220       230       240
b15878 ACAAACGACGGGGTTACAATATTAAAAGAAATGAGTGTTGAGCACCCAGCTGCTAAGATG
       ::::::::::: :::::::: :::: :::::::::::: :: ::::: :: ::::: :::
b15782 ACAAACGACGGTGTTACAATCTTAAGAGAAATGAGTGTAGAACACCCTGCAGCTAAAATG
      170       180       190       200       210       220        

              250       260       270       280       290       300
b15878 TTAATTGAAGTTGCTAAAACCCAAGAAAAAGAAGTTGGAGACGGTACAACAACAGCAGTC
       ::::: :::::::: ::::: :: :::::::::::::: :: :::::::::::::: :: 
b15782 TTAATCGAAGTTGCAAAAACACAGGAAAAAGAAGTTGGCGATGGTACAACAACAGCTGTT
      230       240       250       260       270       280        

              310       320       330       340       350       360
b15878 GTTATTGCTGGAGAGTTGTTAAGAAAAGCTGAAGAGTTGTTAGACCAAAACATCCACCCA
       ::  ::::::: :: :: :: :: ::::::::::: :: :: ::::::::  : ::::::
b15782 GTAGTTGCTGGTGAATTATTGAGGAAAGCTGAAGAATTATTGGACCAAAATGTACACCCA
      290       300       310       320       330       340        

              370       380       390       400       410       420
b15878 TCAGTCATCATCAATGGATACGAGATGGCAAGAAATAAAGCAATTGAAGAGTTAAAGTCA
        :: :  :  : :: :::::: : ::::::    : :::::    :::   ::::: :::
b15782 ACAATTGTTGTAAAAGGATACCAAATGGCAGCTCAAAAAGCTCAAGAATTATTAAAATCA
      350       360       370       380       390       400        

              430       440       450       460       470       480
b15878 GTTGCTAAAGAAGTTAAACCAGATGACACTGAAATGTTAAAGAAAATTGCAATGACATCA
        :::::   ::::::    :  : ::::  ::::: ::::  ::::: :::::::: :::
b15782 ATTGCTTGCGAAGTTGGGGCTCAAGACAAAGAAATCTTAACAAAAATCGCAATGACCTCA
      410       420       430       440       450       460        

              490       500       510       520       530       540
b15878 ATTACTGGTAAAGGAGCAGAGAAAGCAAGAGAGCAGTTAGCTGAAATCGTCGTTGAGGCA
       ::::: :: ::::: :: :: ::::: : ::: :: :::::::: ::: ::::::: :::
b15782 ATTACAGGAAAAGGTGCTGAAAAAGCTAAAGAACAATTAGCTGACATCATCGTTGAAGCA
      470       480       490       500       510       520        

              550       560       570       580       590       600
b15878 GTTAGAACAGTTGTTGATGAAGAAACTGGAAAAGTTGATAAGGACTTAATTAAAGTTGAG
       :::  : :::: ::::: ::::::   ::::::::::: :: :::::::: ::: :::::
b15782 GTTTCAGCAGTAGTTGACGAAGAA---GGAAAAGTTGACAAAGACTTAATCAAAATTGAG
      530       540       550          560       570       580     

              610       620       630       640       650       660
b15878 AAGAAGGAAGGAGCTCCAATTGAAGAAACAACCTTAATTAGAGGAGTTGTTATTGACAAA
       :: ::   ::: ::  :::: :: :: ::    ::::::: ::: ::: :  ::::::::
b15782 AAAAAATCAGGCGCATCAATCGACGACACCGAATTAATTAAAGGTGTTTTAGTTGACAAA
         590       600       610       620       630       640     

              670       680       690       700       710       720
b15878 GAGAGAGTCAACCCACAAATGCCAAAGAAAGTTGAAAACGCTAAGATTGCATTGTTAAAC
       :: ::::: :   : :::::::: :: :::::::   :::: :: :: ::: : ::::::
b15782 GAAAGAGTAAGTGCTCAAATGCCTAAAAAAGTTGTTGACGCAAAAATCGCACTCTTAAAC
         650       660       670       680       690       700     

              730       740       750       760       770       780
b15878 TGCCCAATTGAAGTCAAAGAAACAGAAACTGATGCAGAGATAAGAATTACTGACCCAGCT
       ::  :::: ::: :::::::::::::::: :: ::::: :: ::::: :::::::: :: 
b15782 TGTGCAATCGAAATCAAAGAAACAGAAACAGACGCAGAAATCAGAATCACTGACCCTGCA
         710       720       730       740       750       760     

              790       800       810       820       830       840
b15878 AAGTTAATGGAGTTCATTGAGCAAGAAGAGAAGATGATTAAAGACATGGTTGAGAAAATA
       :: :::::::: ::::: :: :::::::: :: ::: : :::::::::::::   :::: 
b15782 AAATTAATGGAATTCATCGAACAAGAAGAAAAAATGTTAAAAGACATGGTTGCTGAAATC
         770       780       790       800       810       820     

              850       860       870       880       890       900
b15878 GCTGCTACAGGAGCTAATGTTGTCTTCTGTCAAAAAGGAATTGATGACTTAGCTCAGCAC
          :: :  :: :: :: ::: : ::::: ::::::::::: ::::::::::: :: :::
b15782 AAAGCAAGCGGTGCAAACGTTTTATTCTGCCAAAAAGGAATCGATGACTTAGCACAACAC
         830       840       850       860       870       880     

              910       920       930       940       950       960
b15878 TACTTAGCTAAGAAAGGAATCTTAGCAGTAAGAAGAGTTAAGAAGTCAGACATGGAGAAA
       :::::::::::  :::::::: :::: : :::::::::::: :: :: :::::::: :::
b15782 TACTTAGCTAAAGAAGGAATCGTAGCTGCAAGAAGAGTTAAAAAATCCGACATGGAAAAA
         890       900       910       920       930       940     

              970       980       990      1000      1010      1020
b15878 TTAGCTAAAGCTACAGGAGCAAGAATAATAACAAAAATTGATGACTTAACACCAGAAGAC
       :::::::::::::: :: :: :   :::: ::::: ::  : :::::: :: :  :::: 
b15782 TTAGCTAAAGCTACCGGTGCTAACGTAATTACAAACATCAAAGACTTATCAGCTCAAGAT
         950       960       970       980       990      1000     

             1030      1040      1050      1060      1070      1080
b15878 CTTGGAGAAGCTGGATTAGTTGAAGAGAGAAAAGTTGCTGGAGATGCAATGATATTCGTT
        : :: ::::::::  : :::::::: :::::: :  :::::::: ::::::: ::::: 
b15782 TTAGGTGAAGCTGGTCTCGTTGAAGAAAGAAAAATCTCTGGAGATTCAATGATCTTCGTA
        1010      1020      1030      1040      1050      1060     

             1090      1100      1110       1120      1130         
b15878 GAAGAGTGCAAGCATCCAAAGGCTGTAACAAT-CTTAGCAAGAGGTTCAACAGAGCACGT
       ::::: ::::: :: :: :: :: :: ::::: :::: : :::::: :::: :: :::::
b15782 GAAGAATGCAAACACCCTAAAGCAGTTACAATGCTTATC-AGAGGTACAACTGAACACGT
        1070      1080      1090      1100       1110      1120    

    1140      1150      1160      1170      1180      1190         
b15878 TGTTGAAGAAGTTGCAAGAGCAATTGATGATGCAATTGGAGTTGTCAAGTGTGCATTAGA
         : :::::::::::::::::: : :: :: ::  :::: :: ::    ::: :  : ::
b15782 AATCGAAGAAGTTGCAAGAGCAGTAGACGACGCTGTTGGTGTAGTTGCATGTACTATCGA
         1130      1140      1150      1160      1170      1180    

    1200      1210      1220      1230      1240      1250         
b15878 AGAAGGTAAGATTGTTGCTGGTGGGGGAGCAACTGAGATAGAATTAGCTAAGAGATTAAG
       ::: ::::  :: :: :::::::: ::  :::: ::  : :::::: : : :: ::::::
b15782 AGATGGTAGAATCGTAGCTGGTGGAGGTTCAACAGAAGTTGAATTATCCATGAAATTAAG
         1190      1200      1210      1220      1230      1240    

    1260      1270      1280      1290      1300      1310         
b15878 AAAATTCGCTGAAACAGTTGCTGGAAGAGAGCAGTTAGCAGTTAAGGCATTCGCTGATGC
       : ::: ::: :::  : :   ::::::::: ::  : :::::::  ::::::::::: ::
b15782 AGAATACGCAGAAGGAATCAGTGGAAGAGAACAACTCGCAGTTAGAGCATTCGCTGACGC
         1250      1260      1270      1280      1290      1300    

    1320      1330      1340      1350      1360      1370         
b15878 TTTAGAAGTAATACCAAGAACATTAGCTGAGAACTCAGGATTAGACCCAATTGACATGCT
       ::::::::::::::::::::: :::::::: ::: ::::: : ::: :::: :: :: ::
b15782 TTTAGAAGTAATACCAAGAACCTTAGCTGAAAACGCAGGACTCGACGCAATCGAAATCCT
         1310      1320      1330      1340      1350      1360    

    1380      1390      1400      1410      1420       1430        
b15878 CGTTAAGTTGAGAGCTGCTCACGAGAAAGAAGGCGGAGAAGT-CTACGGATTAGACGTCT
       :::::   : ::::: :: ::::  ::  :: :   : :::: :   :: ::: :::: :
b15782 CGTTAGAGTTAGAGCAGCACACG-CAAGCAACGGCAACAAGTGCGCAGGTTTAAACGTAT
         1370      1380       1390      1400      1410      1420   

     1440      1450      1460      1470      1480      1490        
b15878 TCGAAGGAGAAGTAGTTGATATGATGGAGAAAGGGGTTGTTGAACCATTGAAAGTCAAGA
       ::   :::::::: :  :: :::   :  :: :: :::::::::::::: : ::: :: :
b15782 TCACCGGAGAAGTTGAAGACATGTGTGCAAACGGTGTTGTTGAACCATTAAGAGTTAAAA
          1430      1440      1450      1460      1470      1480   

     1500      1510      1520      1530      1540      1550        
b15878 CACAGGCAATTGACTCAGCTACAGAGGCATCAGTCATGCTCTTAAGAATCGATGACGTCA
       :::: :::::  : :::::  : ::  :: :::  ::: :  : ::::::::::: :: :
b15782 CACAAGCAATCCAATCAGCAGCTGAATCAACAGAAATGTTACTCAGAATCGATGATGTAA
          1490      1500      1510      1520      1530      1540   

     1560      1570      1580      1590      1600      1610        
b15878 TAGCTGCTGAGAAAGTTAAAGAAGACAAGGGAGGAGAAGGAGGAGACATGGGAGGAGGTG
       : :::::  :::::  : :::: ::    ::    ::    :: :::::::: :::    
b15782 TTGCTGC--AGAAAAATTAAGAGGA----GGCCCTGACATGGGCGACATGGGCGGAATGG
          1550        1560          1570      1580      1590       

     1620                              
b15878 ACGAATTTTAA                     
                                       
b15782 GTGGCATGGGCGGAATGCCAGGAATGATGTAA
      1600      1610      1620         

</pre>
<hr>
<A name=b3898>
<pre>
>><a onClick="window.open('getRecord.php?id=b3898',
                                'cpndb_record'); return false;" href="getRecord.php?id=b3898" target=_"blank">b3898</a> AY099402 Methanococcus maripaludis LL             (1632 nt)
 initn: 4278 init1: 2683 opt: 4427  Z-score: 131.7  bits: 37.3 E(): 0.04
banded Smith-Waterman score: 4427; 75.5% identity (75.5% similar) in 1609 nt overlap (7-1614:1-1596)
<p>

               10        20        30        40        50        60
b15878 ATGGCAATGGCAGGAGCACCTATAGTAGTATTACCACAAAATGTTAAAAGATATGTTGGA
             ::: ::  :  :::   :: ::: :::::  ::::  : ::::::::  : :::
b3898        ATGTCACAACAACC---AGGAGTTTTACCTGAAAACATGAAAAGATACATGGGA
                     10           20        30        40        50 

               70        80        90       100       110       120
b15878 AGAGACGCTCAAAGAATGAACATCTTAGCAGGTAGAATTATCGCTGAGACAGTTAGAACA
       ::::: :::::::::::::::::::::::::: ::::::::::: :: ::::: ::: ::
b3898  AGAGATGCTCAAAGAATGAACATCTTAGCAGGAAGAATTATCGCAGAAACAGTAAGATCA
              60        70        80        90       100       110 

              130       140       150       160       170       180
b15878 ACATTAGGACCAAAAGGAATGGACAAAATGTTAGTTGATGAATTAGGAGATATAGTTGTT
       ::: : :: ::::::::::::::::::::::::::::: :: ::::: ::  : ::::::
b3898  ACACTCGGTCCAAAAGGAATGGACAAAATGTTAGTTGACGACTTAGGGGACGTTGTTGTT
             120       130       140       150       160       170 

              190       200       210       220       230       240
b15878 ACAAACGACGGGGTTACAATATTAAAAGAAATGAGTGTTGAGCACCCAGCTGCTAAGATG
       ::::::::::: :::::::: :::: :::::::::::: :: ::::: :: ::::: :::
b3898  ACAAACGACGGTGTTACAATCTTAAGAGAAATGAGTGTAGAACACCCTGCAGCTAAAATG
             180       190       200       210       220       230 

              250       260       270       280       290       300
b15878 TTAATTGAAGTTGCTAAAACCCAAGAAAAAGAAGTTGGAGACGGTACAACAACAGCAGTC
       ::::: :::::::: ::::: ::::::::::::::::: ::::::::::::::::: :: 
b3898  TTAATCGAAGTTGCAAAAACACAAGAAAAAGAAGTTGGCGACGGTACAACAACAGCTGTT
             240       250       260       270       280       290 

              310       320       330       340       350       360
b15878 GTTATTGCTGGAGAGTTGTTAAGAAAAGCTGAAGAGTTGTTAGACCAAAACATCCACCCA
       ::  ::::::: :: :: ::::::::::::::::: :: :: ::::::::  : ::::::
b3898  GTAGTTGCTGGTGAATTATTAAGAAAAGCTGAAGAATTATTGGACCAAAATGTACACCCA
             300       310       320       330       340       350 

              370       380       390       400       410       420
b15878 TCAGTCATCATCAATGGATACGAGATGGCAAGAAATAAAGCAATTGAAGAGTTAAAGTCA
        :: :  :  : :: :::::: :    :::    : :::::    :::   :::::  ::
b3898  ACAATTGTTGTAAAAGGATACCAAGCAGCAGCTCAAAAAGCTCAAGAATTATTAAAAACA
             360       370       380       390       400       410 

              430       440       450       460       470       480
b15878 GTTGCTAAAGAAGTTAAACCAGATGACACTGAAATGTTAAAGAAAATTGCAATGACATCA
        ::::    ::::::  : :  : ::::  ::::: ::::  ::::: :::::::: :::
b3898  ATTGCGTGCGAAGTTGGAGCTCAAGACAAAGAAATCTTAACAAAAATCGCAATGACCTCA
             420       430       440       450       460       470 

              490       500       510       520       530       540
b15878 ATTACTGGTAAAGGAGCAGAGAAAGCAAGAGAGCAGTTAGCTGAAATCGTCGTTGAGGCA
       :: :: :: ::::: :: :: ::::: : :::  : :::::::::::: : ::::: :::
b3898  ATCACCGGAAAAGGTGCTGAAAAAGCTAAAGAAAAATTAGCTGAAATCATTGTTGAAGCA
             480       490       500       510       520       530 

              550       560       570       580       590       600
b15878 GTTAGAACAGTTGTTGATGAAGAAACTGGAAAAGTTGATAAGGACTTAATTAAAGTTGAG
       :::  : :::::::::: :: :::   ::::::::::: :: :: ::::: ::: :::::
b3898  GTTTCAGCAGTTGTTGACGACGAA---GGAAAAGTTGACAAAGATTTAATCAAAATTGAG
             540       550          560       570       580        

              610       620       630       640       650       660
b15878 AAGAAGGAAGGAGCTCCAATTGAAGAAACAACCTTAATTAGAGGAGTTGTTATTGACAAA
       :: ::   ::: ::  :::: :: :: ::    ::::: : ::: ::: :  ::::::::
b3898  AAAAAATCAGGCGCATCAATCGACGACACCGAATTAATCAAAGGTGTTTTAGTTGACAAA
      590       600       610       620       630       640        

              670       680       690       700       710       720
b15878 GAGAGAGTCAACCCACAAATGCCAAAGAAAGTTGAAAACGCTAAGATTGCATTGTTAAAC
       :: ::::: : : : :::::::: :: :::::     :::: :: :::::: : ::::::
b3898  GAAAGAGTAAGCGCTCAAATGCCTAAAAAAGTAACTGACGCAAAAATTGCACTTTTAAAC
      650       660       670       680       690       700        

              730       740       750       760       770       780
b15878 TGCCCAATTGAAGTCAAAGAAACAGAAACTGATGCAGAGATAAGAATTACTGACCCAGCT
       ::  :::: ::: :::::::::::::::: :: ::::: :: ::::: :::::::: :: 
b3898  TGTGCAATCGAAATCAAAGAAACAGAAACCGACGCAGAAATCAGAATCACTGACCCTGCA
      710       720       730       740       750       760        

              790       800       810       820       830       840
b15878 AAGTTAATGGAGTTCATTGAGCAAGAAGAGAAGATGATTAAAGACATGGTTGAGAAAATA
       :: :::::::: ::::: :: :::::::: :: ::: : :::::::::::::   :::: 
b3898  AAATTAATGGAATTCATCGAACAAGAAGAAAAAATGTTAAAAGACATGGTTGCTGAAATC
      770       780       790       800       810       820        

              850       860       870       880       890       900
b15878 GCTGCTACAGGAGCTAATGTTGTCTTCTGTCAAAAAGGAATTGATGACTTAGCTCAGCAC
          :: :  :: :: :: ::: : ::::: ::::::::::: ::::::::::: :: :::
b3898  AAAGCAAGCGGTGCAAACGTTTTATTCTGCCAAAAAGGAATCGATGACTTAGCACAACAC
      830       840       850       860       870       880        

              910       920       930       940       950       960
b15878 TACTTAGCTAAGAAAGGAATCTTAGCAGTAAGAAGAGTTAAGAAGTCAGACATGGAGAAA
       :::::::::::  :::::::: :::: : :::::::::::: :: :: :::::::: :::
b3898  TACTTAGCTAAAGAAGGAATCGTAGCTGCAAGAAGAGTTAAAAAATCCGACATGGAAAAA
      890       900       910       920       930       940        

              970       980       990      1000      1010      1020
b15878 TTAGCTAAAGCTACAGGAGCAAGAATAATAACAAAAATTGATGACTTAACACCAGAAGAC
       ::::::::::::::::: :: :   :::: ::::: ::  : :::::: :: :  :::::
b3898  TTAGCTAAAGCTACAGGTGCTAACGTAATTACAAACATCAAAGACTTATCAGCTCAAGAC
      950       960       970       980       990      1000        

             1030      1040      1050      1060      1070      1080
b15878 CTTGGAGAAGCTGGATTAGTTGAAGAGAGAAAAGTTGCTGGAGATGCAATGATATTCGTT
        : :: :: :::::  : :::::::: :::::: :  : :::::: ::::::: ::::: 
b3898  TTAGGTGATGCTGGTCTCGTTGAAGAAAGAAAAATCTCCGGAGATTCAATGATCTTCGTA
     1010      1020      1030      1040      1050      1060        

             1090      1100      1110      1120      1130      1140
b15878 GAAGAGTGCAAGCATCCAAAGGCTGTAACAATCTTAGCAAGAGGTTCAACAGAGCACGTT
       ::::: ::::: :: :: :: :: :: :::::  :    :::::: :::: :: ::::: 
b3898  GAAGAATGCAAACACCCTAAAGCAGTTACAATGCTCATCAGAGGTACAACTGAACACGTA
     1070      1080      1090      1100      1110      1120        

             1150      1160      1170      1180      1190      1200
b15878 GTTGAAGAAGTTGCAAGAGCAATTGATGATGCAATTGGAGTTGTCAAGTGTGCATTAGAA
        :::::::::::::::::::: : :: :::::  :::: :: ::    ::: :: : :::
b3898  ATTGAAGAAGTTGCAAGAGCAGTAGACGATGCTGTTGGTGTAGTTGGATGTACAATTGAA
     1130      1140      1150      1160      1170      1180        

             1210      1220      1230      1240      1250      1260
b15878 GAAGGTAAGATTGTTGCTGGTGGGGGAGCAACTGAGATAGAATTAGCTAAGAGATTAAGA
       :: ::::  :::::  ::::::: ::  :::: ::  : :::::: : : :: :::::::
b3898  GATGGTAGAATTGTATCTGGTGGAGGTTCAACAGAAGTTGAATTATCCATGAAATTAAGA
     1190      1200      1210      1220      1230      1240        

             1270      1280      1290      1300      1310      1320
b15878 AAATTCGCTGAAACAGTTGCTGGAAGAGAGCAGTTAGCAGTTAAGGCATTCGCTGATGCT
        ::: ::: :::  : ::   :::::::: ::  : ::::::: ::::::::::::::::
b3898  GAATACGCAGAAGGAATTAGCGGAAGAGAACAACTCGCAGTTAGGGCATTCGCTGATGCT
     1250      1260      1270      1280      1290      1300        

             1330      1340      1350      1360      1370      1380
b15878 TTAGAAGTAATACCAAGAACATTAGCTGAGAACTCAGGATTAGACCCAATTGACATGCTC
       ::::::::::: :::::::: :::::::: ::: ::::: : ::: :::: :: :: :::
b3898  TTAGAAGTAATCCCAAGAACCTTAGCTGAAAACGCAGGACTCGACGCAATCGAAATCCTC
     1310      1320      1330      1340      1350      1360        

             1390      1400      1410      1420       1430         
b15878 GTTAAGTTGAGAGCTGCTCACGAGAAAGAAGGCGGAGAAGTCTAC-GGATTAGACGTCTT
       :::::  : ::::: :: ::::  ::  :: :   : :: : : : :: ::: :::: ::
b3898  GTTAAAGTTAGAGCAGCACACG-CAAGCAACGGCAACAAATGTGCAGGTTTAAACGTATT
     1370      1380      1390       1400      1410      1420       

    1440      1450      1460      1470      1480      1490         
b15878 CGAAGGAGAAGTAGTTGATATGATGGAGAAAGGGGTTGTTGAACCATTGAAAGTCAAGAC
       :   :::: ::: :  :: :::   :: :: :: :: ::::::::::: : ::: :: ::
b3898  CACCGGAGCAGTTGAAGACATGTGCGAAAACGGTGTAGTTGAACCATTAAGAGTTAAAAC
      1430      1440      1450      1460      1470      1480       

    1500      1510      1520      1530      1540      1550         
b15878 ACAGGCAATTGACTCAGCTACAGAGGCATCAGTCATGCTCTTAAGAATCGATGACGTCAT
       ::: :::::  : :::::  : ::  :: :::  ::: :  : :::::::: :: :: ::
b3898  ACAAGCAATCCAGTCAGCAGCTGAATCAACAGAAATGTTACTCAGAATCGACGATGTAAT
      1490      1500      1510      1520      1530      1540       

    1560      1570      1580      1590      1600      1610         
b15878 AGCTGCTGAGAAAGTTAAAGAAGACAAGGGAGGAGAAGGAGGAGACATGGGAGGAGGTGA
        :::::  :::::  : :::: ::    :     ::    ::::::::::: :::     
b3898  TGCTGC--AGAAAAATTAAGAGGA----GCTCCTGACATGGGAGACATGGGCGGAATGCC
      1550        1560          1570      1580      1590      1600 

    1620                              
b15878 CGAATTTTAA                     
                                      
b3898  AGGAATGGGCGGAATGCCAGGAATGATGTAA
            1610      1620      1630  

</pre>
<hr>
<A name=b5023>
<pre>
>><a onClick="window.open('getRecord.php?id=b5023',
                                'cpndb_record'); return false;" href="getRecord.php?id=b5023" target=_"blank">b5023</a> NC_005791 Methanococcus maripaludis strain S2     (1632 nt)
 initn: 4278 init1: 2683 opt: 4427  Z-score: 131.7  bits: 37.3 E(): 0.04
banded Smith-Waterman score: 4427; 75.5% identity (75.5% similar) in 1609 nt overlap (7-1614:1-1596)
<p>

               10        20        30        40        50        60
b15878 ATGGCAATGGCAGGAGCACCTATAGTAGTATTACCACAAAATGTTAAAAGATATGTTGGA
             ::: ::  :  :::   :: ::: :::::  ::::  : ::::::::  : :::
b5023        ATGTCACAACAACC---AGGAGTTTTACCTGAAAACATGAAAAGATACATGGGA
                     10           20        30        40        50 

               70        80        90       100       110       120
b15878 AGAGACGCTCAAAGAATGAACATCTTAGCAGGTAGAATTATCGCTGAGACAGTTAGAACA
       ::::: :::::::::::::::::::::::::: ::::::::::: :: ::::: ::: ::
b5023  AGAGATGCTCAAAGAATGAACATCTTAGCAGGAAGAATTATCGCAGAAACAGTAAGATCA
              60        70        80        90       100       110 

              130       140       150       160       170       180
b15878 ACATTAGGACCAAAAGGAATGGACAAAATGTTAGTTGATGAATTAGGAGATATAGTTGTT
       ::: : :: ::::::::::::::::::::::::::::: :: ::::: ::  : ::::::
b5023  ACACTCGGTCCAAAAGGAATGGACAAAATGTTAGTTGACGACTTAGGGGACGTTGTTGTT
             120       130       140       150       160       170 

              190       200       210       220       230       240
b15878 ACAAACGACGGGGTTACAATATTAAAAGAAATGAGTGTTGAGCACCCAGCTGCTAAGATG
       ::::::::::: :::::::: :::: :::::::::::: :: ::::: :: ::::: :::
b5023  ACAAACGACGGTGTTACAATCTTAAGAGAAATGAGTGTAGAACACCCTGCAGCTAAAATG
             180       190       200       210       220       230 

              250       260       270       280       290       300
b15878 TTAATTGAAGTTGCTAAAACCCAAGAAAAAGAAGTTGGAGACGGTACAACAACAGCAGTC
       ::::: :::::::: ::::: ::::::::::::::::: ::::::::::::::::: :: 
b5023  TTAATCGAAGTTGCAAAAACACAAGAAAAAGAAGTTGGCGACGGTACAACAACAGCTGTT
             240       250       260       270       280       290 

              310       320       330       340       350       360
b15878 GTTATTGCTGGAGAGTTGTTAAGAAAAGCTGAAGAGTTGTTAGACCAAAACATCCACCCA
       ::  ::::::: :: :: ::::::::::::::::: :: :: ::::::::  : ::::::
b5023  GTAGTTGCTGGTGAATTATTAAGAAAAGCTGAAGAATTATTGGACCAAAATGTACACCCA
             300       310       320       330       340       350 

              370       380       390       400       410       420
b15878 TCAGTCATCATCAATGGATACGAGATGGCAAGAAATAAAGCAATTGAAGAGTTAAAGTCA
        :: :  :  : :: :::::: :    :::    : :::::    :::   :::::  ::
b5023  ACAATTGTTGTAAAAGGATACCAAGCAGCAGCTCAAAAAGCTCAAGAATTATTAAAAACA
             360       370       380       390       400       410 

              430       440       450       460       470       480
b15878 GTTGCTAAAGAAGTTAAACCAGATGACACTGAAATGTTAAAGAAAATTGCAATGACATCA
        ::::    ::::::  : :  : ::::  ::::: ::::  ::::: :::::::: :::
b5023  ATTGCGTGCGAAGTTGGAGCTCAAGACAAAGAAATCTTAACAAAAATCGCAATGACCTCA
             420       430       440       450       460       470 

              490       500       510       520       530       540
b15878 ATTACTGGTAAAGGAGCAGAGAAAGCAAGAGAGCAGTTAGCTGAAATCGTCGTTGAGGCA
       :: :: :: ::::: :: :: ::::: : :::  : :::::::::::: : ::::: :::
b5023  ATCACCGGAAAAGGTGCTGAAAAAGCTAAAGAAAAATTAGCTGAAATCATTGTTGAAGCA
             480       490       500       510       520       530 

              550       560       570       580       590       600
b15878 GTTAGAACAGTTGTTGATGAAGAAACTGGAAAAGTTGATAAGGACTTAATTAAAGTTGAG
       :::  : :::::::::: :: :::   ::::::::::: :: :: ::::: ::: :::::
b5023  GTTTCAGCAGTTGTTGACGACGAA---GGAAAAGTTGACAAAGATTTAATCAAAATTGAG
             540       550          560       570       580        

              610       620       630       640       650       660
b15878 AAGAAGGAAGGAGCTCCAATTGAAGAAACAACCTTAATTAGAGGAGTTGTTATTGACAAA
       :: ::   ::: ::  :::: :: :: ::    ::::: : ::: ::: :  ::::::::
b5023  AAAAAATCAGGCGCATCAATCGACGACACCGAATTAATCAAAGGTGTTTTAGTTGACAAA
      590       600       610       620       630       640        

              670       680       690       700       710       720
b15878 GAGAGAGTCAACCCACAAATGCCAAAGAAAGTTGAAAACGCTAAGATTGCATTGTTAAAC
       :: ::::: : : : :::::::: :: :::::     :::: :: :::::: : ::::::
b5023  GAAAGAGTAAGCGCTCAAATGCCTAAAAAAGTAACTGACGCAAAAATTGCACTTTTAAAC
      650       660       670       680       690       700        

              730       740       750       760       770       780
b15878 TGCCCAATTGAAGTCAAAGAAACAGAAACTGATGCAGAGATAAGAATTACTGACCCAGCT
       ::  :::: ::: :::::::::::::::: :: ::::: :: ::::: :::::::: :: 
b5023  TGTGCAATCGAAATCAAAGAAACAGAAACCGACGCAGAAATCAGAATCACTGACCCTGCA
      710       720       730       740       750       760        

              790       800       810       820       830       840
b15878 AAGTTAATGGAGTTCATTGAGCAAGAAGAGAAGATGATTAAAGACATGGTTGAGAAAATA
       :: :::::::: ::::: :: :::::::: :: ::: : :::::::::::::   :::: 
b5023  AAATTAATGGAATTCATCGAACAAGAAGAAAAAATGTTAAAAGACATGGTTGCTGAAATC
      770       780       790       800       810       820        

              850       860       870       880       890       900
b15878 GCTGCTACAGGAGCTAATGTTGTCTTCTGTCAAAAAGGAATTGATGACTTAGCTCAGCAC
          :: :  :: :: :: ::: : ::::: ::::::::::: ::::::::::: :: :::
b5023  AAAGCAAGCGGTGCAAACGTTTTATTCTGCCAAAAAGGAATCGATGACTTAGCACAACAC
      830       840       850       860       870       880        

              910       920       930       940       950       960
b15878 TACTTAGCTAAGAAAGGAATCTTAGCAGTAAGAAGAGTTAAGAAGTCAGACATGGAGAAA
       :::::::::::  :::::::: :::: : :::::::::::: :: :: :::::::: :::
b5023  TACTTAGCTAAAGAAGGAATCGTAGCTGCAAGAAGAGTTAAAAAATCCGACATGGAAAAA
      890       900       910       920       930       940        

              970       980       990      1000      1010      1020
b15878 TTAGCTAAAGCTACAGGAGCAAGAATAATAACAAAAATTGATGACTTAACACCAGAAGAC
       ::::::::::::::::: :: :   :::: ::::: ::  : :::::: :: :  :::::
b5023  TTAGCTAAAGCTACAGGTGCTAACGTAATTACAAACATCAAAGACTTATCAGCTCAAGAC
      950       960       970       980       990      1000        

             1030      1040      1050      1060      1070      1080
b15878 CTTGGAGAAGCTGGATTAGTTGAAGAGAGAAAAGTTGCTGGAGATGCAATGATATTCGTT
        : :: :: :::::  : :::::::: :::::: :  : :::::: ::::::: ::::: 
b5023  TTAGGTGATGCTGGTCTCGTTGAAGAAAGAAAAATCTCCGGAGATTCAATGATCTTCGTA
     1010      1020      1030      1040      1050      1060        

             1090      1100      1110      1120      1130      1140
b15878 GAAGAGTGCAAGCATCCAAAGGCTGTAACAATCTTAGCAAGAGGTTCAACAGAGCACGTT
       ::::: ::::: :: :: :: :: :: :::::  :    :::::: :::: :: ::::: 
b5023  GAAGAATGCAAACACCCTAAAGCAGTTACAATGCTCATCAGAGGTACAACTGAACACGTA
     1070      1080      1090      1100      1110      1120        

             1150      1160      1170      1180      1190      1200
b15878 GTTGAAGAAGTTGCAAGAGCAATTGATGATGCAATTGGAGTTGTCAAGTGTGCATTAGAA
        :::::::::::::::::::: : :: :::::  :::: :: ::    ::: :: : :::
b5023  ATTGAAGAAGTTGCAAGAGCAGTAGACGATGCTGTTGGTGTAGTTGGATGTACAATTGAA
     1130      1140      1150      1160      1170      1180        

             1210      1220      1230      1240      1250      1260
b15878 GAAGGTAAGATTGTTGCTGGTGGGGGAGCAACTGAGATAGAATTAGCTAAGAGATTAAGA
       :: ::::  :::::  ::::::: ::  :::: ::  : :::::: : : :: :::::::
b5023  GATGGTAGAATTGTATCTGGTGGAGGTTCAACAGAAGTTGAATTATCCATGAAATTAAGA
     1190      1200      1210      1220      1230      1240        

             1270      1280      1290      1300      1310      1320
b15878 AAATTCGCTGAAACAGTTGCTGGAAGAGAGCAGTTAGCAGTTAAGGCATTCGCTGATGCT
        ::: ::: :::  : ::   :::::::: ::  : ::::::: ::::::::::::::::
b5023  GAATACGCAGAAGGAATTAGCGGAAGAGAACAACTCGCAGTTAGGGCATTCGCTGATGCT
     1250      1260      1270      1280      1290      1300        

             1330      1340      1350      1360      1370      1380
b15878 TTAGAAGTAATACCAAGAACATTAGCTGAGAACTCAGGATTAGACCCAATTGACATGCTC
       ::::::::::: :::::::: :::::::: ::: ::::: : ::: :::: :: :: :::
b5023  TTAGAAGTAATCCCAAGAACCTTAGCTGAAAACGCAGGACTCGACGCAATCGAAATCCTC
     1310      1320      1330      1340      1350      1360        

             1390      1400      1410      1420       1430         
b15878 GTTAAGTTGAGAGCTGCTCACGAGAAAGAAGGCGGAGAAGTCTAC-GGATTAGACGTCTT
       :::::  : ::::: :: ::::  ::  :: :   : :: : : : :: ::: :::: ::
b5023  GTTAAAGTTAGAGCAGCACACG-CAAGCAACGGCAACAAATGTGCAGGTTTAAACGTATT
     1370      1380      1390       1400      1410      1420       

    1440      1450      1460      1470      1480      1490         
b15878 CGAAGGAGAAGTAGTTGATATGATGGAGAAAGGGGTTGTTGAACCATTGAAAGTCAAGAC
       :   :::: ::: :  :: :::   :: :: :: :: ::::::::::: : ::: :: ::
b5023  CACCGGAGCAGTTGAAGACATGTGCGAAAACGGTGTAGTTGAACCATTAAGAGTTAAAAC
      1430      1440      1450      1460      1470      1480       

    1500      1510      1520      1530      1540      1550         
b15878 ACAGGCAATTGACTCAGCTACAGAGGCATCAGTCATGCTCTTAAGAATCGATGACGTCAT
       ::: :::::  : :::::  : ::  :: :::  ::: :  : :::::::: :: :: ::
b5023  ACAAGCAATCCAGTCAGCAGCTGAATCAACAGAAATGTTACTCAGAATCGACGATGTAAT
      1490      1500      1510      1520      1530      1540       

    1560      1570      1580      1590      1600      1610         
b15878 AGCTGCTGAGAAAGTTAAAGAAGACAAGGGAGGAGAAGGAGGAGACATGGGAGGAGGTGA
        :::::  :::::  : :::: ::    :     ::    ::::::::::: :::     
b5023  TGCTGC--AGAAAAATTAAGAGGA----GCTCCTGACATGGGAGACATGGGCGGAATGCC
      1550        1560          1570      1580      1590      1600 

    1620                              
b15878 CGAATTTTAA                     
                                      
b5023  AGGAATGGGCGGAATGCCAGGAATGATGTAA
            1610      1620      1630  

</pre>
<hr>
<A name=b10133>
<pre>
>><a onClick="window.open('getRecord.php?id=b10133',
                                'cpndb_record'); return false;" href="getRecord.php?id=b10133" target=_"blank">b10133</a> CP000745 Methanococcus maripaludis C7            (1629 nt)
 initn: 4193 init1: 2656 opt: 4400  Z-score: 131.2  bits: 37.2 E(): 0.043
banded Smith-Waterman score: 4400; 75.5% identity (75.5% similar) in 1600 nt overlap (16-1614:4-1593)
<p>

               10        20        30        40        50        60
b15878 ATGGCAATGGCAGGAGCACCTATAGTAGTATTACCACAAAATGTTAAAAGATATGTTGGA
                      ::::    :: ::: :::::  ::::  : :: :::::  : :::
b10133             ATGGCACAACCAGGAGTTTTACCTGAAAACATGAAGAGATACATGGGA
                           10        20        30        40        

               70        80        90       100       110       120
b15878 AGAGACGCTCAAAGAATGAACATCTTAGCAGGTAGAATTATCGCTGAGACAGTTAGAACA
       ::::: ::::::::::::::::::::::: :: ::::: ::::: :: ::::: ::: ::
b10133 AGAGATGCTCAAAGAATGAACATCTTAGCGGGAAGAATCATCGCAGAAACAGTAAGATCA
       50        60        70        80        90       100        

              130       140       150       160       170       180
b15878 ACATTAGGACCAAAAGGAATGGACAAAATGTTAGTTGATGAATTAGGAGATATAGTTGTT
       ::: : :: :::::::::::::::::::::::::: :: :: ::::: ::  : ::::::
b10133 ACACTCGGTCCAAAAGGAATGGACAAAATGTTAGTCGACGACTTAGGGGACGTTGTTGTT
      110       120       130       140       150       160        

              190       200       210       220       230       240
b15878 ACAAACGACGGGGTTACAATATTAAAAGAAATGAGTGTTGAGCACCCAGCTGCTAAGATG
       ::::::::::: :::::::: :::: :::::::::::: :: ::::: :: ::::: :::
b10133 ACAAACGACGGTGTTACAATCTTAAGAGAAATGAGTGTAGAACACCCTGCAGCTAAAATG
      170       180       190       200       210       220        

              250       260       270       280       290       300
b15878 TTAATTGAAGTTGCTAAAACCCAAGAAAAAGAAGTTGGAGACGGTACAACAACAGCAGTC
       ::::: :::::::: ::::: :: :::::::::::::: ::::::::::::::::: :: 
b10133 TTAATCGAAGTTGCAAAAACACAGGAAAAAGAAGTTGGCGACGGTACAACAACAGCTGTT
      230       240       250       260       270       280        

              310       320       330       340       350       360
b15878 GTTATTGCTGGAGAGTTGTTAAGAAAAGCTGAAGAGTTGTTAGACCAAAACATCCACCCA
       ::  ::::::: :: :: :: :::::::::::::: :: :: ::::::::  : ::::::
b10133 GTAGTTGCTGGTGAATTATTGAGAAAAGCTGAAGAATTATTGGACCAAAATGTACACCCA
      290       300       310       320       330       340        

              370       380       390       400       410       420
b15878 TCAGTCATCATCAATGGATACGAGATGGCAAGAAATAAAGCAATTGAAGAGTTAAAGTCA
        :: :  :  : :: :::::: : :::::   :   :::::    :::  ::::::  ::
b10133 ACAATTGTTGTAAAAGGATACCAAATGGCTGCAGCAAAAGCTCAAGAATTGTTAAAAGCA
      350       360       370       380       390       400        

              430       440       450       460       470       480
b15878 GTTGCTAAAGAAGTTAAACCAGATGACACTGAAATGTTAAAGAAAATTGCAATGACATCA
        :::::   ::::::  : :  : ::::  ::::: ::::  ::::: :::::::: :::
b10133 ATTGCTTGCGAAGTTGGAGCTCAAGACAAAGAAATTTTAACAAAAATCGCAATGACCTCA
      410       420       430       440       450       460        

              490       500       510       520       530       540
b15878 ATTACTGGTAAAGGAGCAGAGAAAGCAAGAGAGCAGTTAGCTGAAATCGTCGTTGAGGCA
       :::::::: ::::: :: :: ::::: : ::: :: :::::::: ::: ::::::: :::
b10133 ATTACTGGAAAAGGTGCTGAAAAAGCTAAAGAACAATTAGCTGACATCATCGTTGACGCA
      470       480       490       500       510       520        

              550       560       570       580       590       600
b15878 GTTAGAACAGTTGTTGATGAAGAAACTGGAAAAGTTGATAAGGACTTAATTAAAGTTGAG
       :::  : :::: ::::: ::  :::: ::::::::::: :: :::::::: ::: :::::
b10133 GTTTCAGCAGTAGTTGACGA--AAAC-GGAAAAGTTGACAAAGACTTAATCAAAATTGAG
      530       540         550        560       570       580     

              610       620       630       640       650       660
b15878 AAGAAGGAAGGAGCTCCAATTGAAGAAACAACCTTAATTAGAGGAGTTGTTATTGACAAA
       :: ::   ::: ::  :::: :: :: ::    ::::: : ::: ::: :  ::::::::
b10133 AAAAAATCAGGCGCATCAATCGACGACACCGAATTAATCAAAGGTGTTTTAGTTGACAAA
         590       600       610       620       630       640     

              670       680       690       700       710       720
b15878 GAGAGAGTCAACCCACAAATGCCAAAGAAAGTTGAAAACGCTAAGATTGCATTGTTAAAC
       :: ::::: : : : :::::::: :: :::::::   :::: :: :::::: : ::::::
b10133 GAAAGAGTAAGCGCTCAAATGCCTAAAAAAGTTGTTGACGCAAAAATTGCACTCTTAAAC
         650       660       670       680       690       700     

              730       740       750       760       770       780
b15878 TGCCCAATTGAAGTCAAAGAAACAGAAACTGATGCAGAGATAAGAATTACTGACCCAGCT
       ::  :::::::: :::::::::::::::: :::::::: :: ::::: :::::::: :: 
b10133 TGTGCAATTGAAATCAAAGAAACAGAAACAGATGCAGAAATCAGAATCACTGACCCTGCA
         710       720       730       740       750       760     

              790       800       810       820       830       840
b15878 AAGTTAATGGAGTTCATTGAGCAAGAAGAGAAGATGATTAAAGACATGGTTGAGAAAATA
       :: :::::::: ::::: :: :::::::: :: ::: : :::::::::::::   :::: 
b10133 AAATTAATGGAATTCATCGAACAAGAAGAAAAAATGTTAAAAGACATGGTTGCTGAAATC
         770       780       790       800       810       820     

              850       860       870       880       890       900
b15878 GCTGCTACAGGAGCTAATGTTGTCTTCTGTCAAAAAGGAATTGATGACTTAGCTCAGCAC
          :: :  :: :: :: ::: : ::::: ::::::::::: ::::::::::: :: :::
b10133 AAAGCAAGCGGTGCAAACGTTTTATTCTGCCAAAAAGGAATCGATGACTTAGCACAACAC
         830       840       850       860       870       880     

              910       920       930       940       950       960
b15878 TACTTAGCTAAGAAAGGAATCTTAGCAGTAAGAAGAGTTAAGAAGTCAGACATGGAGAAA
       :::::::::::  :::::::: :::: : :::::::::::: :: :: :::::::: :::
b10133 TACTTAGCTAAAGAAGGAATCGTAGCTGCAAGAAGAGTTAAAAAATCCGACATGGAAAAA
         890       900       910       920       930       940     

              970       980       990      1000      1010      1020
b15878 TTAGCTAAAGCTACAGGAGCAAGAATAATAACAAAAATTGATGACTTAACACCAGAAGAC
       :::::::::::::: :: :: :   :::: ::::: ::  : :::::: :: :  :::::
b10133 TTAGCTAAAGCTACCGGTGCTAACGTAATTACAAACATCAAAGACTTATCAGCTCAAGAC
         950       960       970       980       990      1000     

             1030      1040      1050      1060      1070      1080
b15878 CTTGGAGAAGCTGGATTAGTTGAAGAGAGAAAAGTTGCTGGAGATGCAATGATATTCGTT
        : :: :: :: ::  : :::::::: :::::: :  : :::::  ::::::: ::::: 
b10133 TTGGGTGATGCAGGTCTCGTTGAAGAAAGAAAAATCTCCGGAGACTCAATGATCTTCGTA
        1010      1020      1030      1040      1050      1060     

             1090      1100      1110      1120      1130      1140
b15878 GAAGAGTGCAAGCATCCAAAGGCTGTAACAATCTTAGCAAGAGGTTCAACAGAGCACGTT
       ::::: ::::: :: :: :: :: :: :::::  :    :::::: :::: :: :: :: 
b10133 GAAGAATGCAAACACCCTAAAGCAGTTACAATGCTCATCAGAGGTACAACTGAACATGTA
        1070      1080      1090      1100      1110      1120     

             1150      1160      1170      1180      1190      1200
b15878 GTTGAAGAAGTTGCAAGAGCAATTGATGATGCAATTGGAGTTGTCAAGTGTGCATTAGAA
        : :::::::::::::::::: : ::::::::  :::: :: :: :  ::: :  : :::
b10133 ATCGAAGAAGTTGCAAGAGCAGTAGATGATGCTGTTGGTGTAGTAAGCTGTACGATCGAA
        1130      1140      1150      1160      1170      1180     

             1210      1220      1230      1240      1250      1260
b15878 GAAGGTAAGATTGTTGCTGGTGGGGGAGCAACTGAGATAGAATTAGCTAAGAGATTAAGA
       :: ::::  :: :: :::::::: ::  :::: ::  : :::::: : : :: :::::::
b10133 GATGGTAGAATCGTAGCTGGTGGAGGTTCAACAGAAGTTGAATTATCCATGAAATTAAGA
        1190      1200      1210      1220      1230      1240     

             1270      1280      1290      1300      1310      1320
b15878 AAATTCGCTGAAACAGTTGCTGGAAGAGAGCAGTTAGCAGTTAAGGCATTCGCTGATGCT
        ::: ::: :::  : :    :::::::: ::  : :::::::  :::::::: ::::::
b10133 GAATACGCAGAAGGAATCAGCGGAAGAGAACAACTCGCAGTTAGAGCATTCGCGGATGCT
        1250      1260      1270      1280      1290      1300     

             1330      1340      1350      1360      1370      1380
b15878 TTAGAAGTAATACCAAGAACATTAGCTGAGAACTCAGGATTAGACCCAATTGACATGCTC
       ::::::::::: :::::::: :::::::: ::: ::::: : ::  :::: :: :: :::
b10133 TTAGAAGTAATCCCAAGAACCTTAGCTGAAAACGCAGGACTCGATGCAATCGAAATCCTC
        1310      1320      1330      1340      1350      1360     

             1390      1400      1410      1420       1430         
b15878 GTTAAGTTGAGAGCTGCTCACGAGAAAGAAGGCGGAGAAGT-CTACGGATTAGACGTCTT
       ::::   : ::::: :: ::::  ::  :: :   : :::: :   :: ::: :::: ::
b10133 GTTAGAGTTAGAGCAGCACACG-CAAGCAACGGCAACAAGTGCGCAGGTTTAAACGTATT
        1370      1380       1390      1400      1410      1420    

    1440      1450      1460      1470      1480      1490         
b15878 CGAAGGAGAAGTAGTTGATATGATGGAGAAAGGGGTTGTTGAACCATTGAAAGTCAAGAC
       :   :::::::: :  :: :::   :  :: :: :::::::::::::: : ::: :: ::
b10133 CACTGGAGAAGTTGAAGACATGTGTGCAAACGGTGTTGTTGAACCATTAAGAGTTAAAAC
         1430      1440      1450      1460      1470      1480    

    1500      1510      1520      1530      1540      1550         
b15878 ACAGGCAATTGACTCAGCTACAGAGGCATCAGTCATGCTCTTAAGAATCGATGACGTCAT
       ::: :::::  : :::::  : ::  :: :::  ::: :  : :::::::: :: :: ::
b10133 ACAAGCAATCCAATCAGCAGCTGAATCAACAGAAATGTTACTCAGAATCGACGATGTAAT
         1490      1500      1510      1520      1530      1540    

    1560      1570      1580      1590      1600      1610         
b15878 AGCTGCTGAGAAAGTTAAAGAAGACAAGGGAGGAGAAGGAGGAGACATGGGAGGAGGTGA
        :::::  :::::  : :::: ::    ::    ::    :: :::::::: :::     
b10133 TGCTGC--AGAAAAATTAAGAGGA----GGCCCTGACATGGGCGACATGGGCGGAATGGG
         1550        1560          1570      1580      1590        

    1620                              
b15878 CGAATTTTAA                     
                                      
b10133 TGGCATGGGCGGAATGCCAGGAATGATGTAA
     1600      1610      1620         

</pre>
<hr>
<A name=b19322>
<pre>
>><a onClick="window.open('getRecord.php?id=b19322',
                                'cpndb_record'); return false;" href="getRecord.php?id=b19322" target=_"blank">b19322</a> CP002913 Methanococcus maripaludis X1            (1632 nt)
 initn: 4251 init1: 2656 opt: 4400  Z-score: 131.2  bits: 37.2 E(): 0.043
banded Smith-Waterman score: 4400; 75.3% identity (75.3% similar) in 1609 nt overlap (7-1614:1-1596)
<p>

               10        20        30        40        50        60
b15878 ATGGCAATGGCAGGAGCACCTATAGTAGTATTACCACAAAATGTTAAAAGATATGTTGGA
             ::: ::  :  :::   :: ::: :::::  ::::  : ::::::::  : :::
b19322       ATGTCACAACAACC---AGGAGTTTTACCTGAAAACATGAAAAGATACATGGGA
                     10           20        30        40        50 

               70        80        90       100       110       120
b15878 AGAGACGCTCAAAGAATGAACATCTTAGCAGGTAGAATTATCGCTGAGACAGTTAGAACA
       ::::: :::::::::::::::::::::::::: ::::::::::: :: ::::: ::: ::
b19322 AGAGATGCTCAAAGAATGAACATCTTAGCAGGAAGAATTATCGCAGAAACAGTAAGATCA
              60        70        80        90       100       110 

              130       140       150       160       170       180
b15878 ACATTAGGACCAAAAGGAATGGACAAAATGTTAGTTGATGAATTAGGAGATATAGTTGTT
       ::: : :: ::::::::::::::::::::::::::::: :: ::::: ::  : ::::::
b19322 ACACTTGGTCCAAAAGGAATGGACAAAATGTTAGTTGACGACTTAGGGGACGTTGTTGTT
             120       130       140       150       160       170 

              190       200       210       220       230       240
b15878 ACAAACGACGGGGTTACAATATTAAAAGAAATGAGTGTTGAGCACCCAGCTGCTAAGATG
       ::::::::::: :::::::: :::: :::::::::::: :: ::::: :: ::::: :::
b19322 ACAAACGACGGTGTTACAATCTTAAGAGAAATGAGTGTAGAACACCCTGCAGCTAAAATG
             180       190       200       210       220       230 

              250       260       270       280       290       300
b15878 TTAATTGAAGTTGCTAAAACCCAAGAAAAAGAAGTTGGAGACGGTACAACAACAGCAGTC
       ::::: :::::::: ::::: ::::::::::::::::: ::::::::::::::::: :: 
b19322 TTAATCGAAGTTGCAAAAACACAAGAAAAAGAAGTTGGCGACGGTACAACAACAGCTGTT
             240       250       260       270       280       290 

              310       320       330       340       350       360
b15878 GTTATTGCTGGAGAGTTGTTAAGAAAAGCTGAAGAGTTGTTAGACCAAAACATCCACCCA
       ::  ::::::: :: :: ::::::::::::::::: :: :: ::::::::  : ::::::
b19322 GTAGTTGCTGGTGAATTATTAAGAAAAGCTGAAGAATTATTGGACCAAAATGTACACCCA
             300       310       320       330       340       350 

              370       380       390       400       410       420
b15878 TCAGTCATCATCAATGGATACGAGATGGCAAGAAATAAAGCAATTGAAGAGTTAAAGTCA
        :: :  :  : :: :::::: :    :::    : :::::    :::   :::::  ::
b19322 ACAATTGTTGTAAAAGGATACCAAGCAGCAGCTCAAAAAGCTCAAGAATTATTAAAAACA
             360       370       380       390       400       410 

              430       440       450       460       470       480
b15878 GTTGCTAAAGAAGTTAAACCAGATGACACTGAAATGTTAAAGAAAATTGCAATGACATCA
        ::::    ::::::  : :  : ::::  ::::: ::::  ::::: :::::::: :::
b19322 ATTGCGTGCGAAGTTGGAGCTCAAGACAAAGAAATCTTAACAAAAATCGCAATGACCTCA
             420       430       440       450       460       470 

              490       500       510       520       530       540
b15878 ATTACTGGTAAAGGAGCAGAGAAAGCAAGAGAGCAGTTAGCTGAAATCGTCGTTGAGGCA
       :: :: :: ::::: :: :: ::::: : :::  : :::::::::::: : ::::: :::
b19322 ATCACCGGAAAAGGTGCTGAAAAAGCTAAAGAAAAATTAGCTGAAATCATTGTTGAAGCA
             480       490       500       510       520       530 

              550       560       570       580       590       600
b15878 GTTAGAACAGTTGTTGATGAAGAAACTGGAAAAGTTGATAAGGACTTAATTAAAGTTGAG
       :::  : :::::::::: :: :::   ::::::::::: :: :: ::::: ::: :::::
b19322 GTTTCAGCAGTTGTTGACGACGAA---GGAAAAGTTGACAAAGATTTAATCAAAATTGAG
             540       550          560       570       580        

              610       620       630       640       650       660
b15878 AAGAAGGAAGGAGCTCCAATTGAAGAAACAACCTTAATTAGAGGAGTTGTTATTGACAAA
       :: ::   ::: ::  :::: :: :: ::    ::::: : ::: ::: :  ::::::::
b19322 AAAAAATCAGGCGCATCAATCGACGACACCGAATTAATCAAAGGTGTTTTAGTTGACAAA
      590       600       610       620       630       640        

              670       680       690       700       710       720
b15878 GAGAGAGTCAACCCACAAATGCCAAAGAAAGTTGAAAACGCTAAGATTGCATTGTTAAAC
       :: ::::: : : : :::::::: :: :::::     :::: :: :::::: : ::::::
b19322 GAAAGAGTAAGCGCTCAAATGCCTAAAAAAGTAACTGACGCAAAAATTGCACTTTTAAAC
      650       660       670       680       690       700        

              730       740       750       760       770       780
b15878 TGCCCAATTGAAGTCAAAGAAACAGAAACTGATGCAGAGATAAGAATTACTGACCCAGCT
       ::  :::: ::: :::::::::::::::: :: ::::: :: ::::: :::::::: :: 
b19322 TGTGCAATCGAAATCAAAGAAACAGAAACCGACGCAGAAATCAGAATCACTGACCCTGCA
      710       720       730       740       750       760        

              790       800       810       820       830       840
b15878 AAGTTAATGGAGTTCATTGAGCAAGAAGAGAAGATGATTAAAGACATGGTTGAGAAAATA
       :: :::::::: ::::: :: :::::::: :: ::: : :::::::::::::   :::: 
b19322 AAATTAATGGAATTCATCGAACAAGAAGAAAAAATGTTAAAAGACATGGTTGCTGAAATC
      770       780       790       800       810       820        

              850       860       870       880       890       900
b15878 GCTGCTACAGGAGCTAATGTTGTCTTCTGTCAAAAAGGAATTGATGACTTAGCTCAGCAC
          :: :  :: :: :: ::: : ::::: ::::::::::: ::::::::::: :: :::
b19322 AAAGCAAGCGGTGCAAACGTTTTATTCTGCCAAAAAGGAATCGATGACTTAGCACAACAC
      830       840       850       860       870       880        

              910       920       930       940       950       960
b15878 TACTTAGCTAAGAAAGGAATCTTAGCAGTAAGAAGAGTTAAGAAGTCAGACATGGAGAAA
       :::::::::::  :::::::  : :: : :::::::::::: :: :: :::::::: :::
b19322 TACTTAGCTAAAGAAGGAATTATGGCTGCAAGAAGAGTTAAAAAATCCGACATGGAAAAA
      890       900       910       920       930       940        

              970       980       990      1000      1010      1020
b15878 TTAGCTAAAGCTACAGGAGCAAGAATAATAACAAAAATTGATGACTTAACACCAGAAGAC
       ::::::::::::::::: :: :   :::: ::::: ::  : :::::: :: :  :::::
b19322 TTAGCTAAAGCTACAGGTGCTAACGTAATTACAAACATCAAAGACTTATCAGCTCAAGAC
      950       960       970       980       990      1000        

             1030      1040      1050      1060      1070      1080
b15878 CTTGGAGAAGCTGGATTAGTTGAAGAGAGAAAAGTTGCTGGAGATGCAATGATATTCGTT
        : :: :: :::::  : :::::::: :::::: :  : :::::: ::::::: ::::: 
b19322 TTAGGTGATGCTGGTCTCGTTGAAGAAAGAAAAATCTCCGGAGATTCAATGATCTTCGTA
     1010      1020      1030      1040      1050      1060        

             1090      1100      1110      1120      1130      1140
b15878 GAAGAGTGCAAGCATCCAAAGGCTGTAACAATCTTAGCAAGAGGTTCAACAGAGCACGTT
       ::::: ::::: :: :: :: :: :: :::::  :    :::::: :::: :: ::::: 
b19322 GAAGAATGCAAACACCCTAAAGCAGTTACAATGCTCATCAGAGGTACAACTGAACACGTA
     1070      1080      1090      1100      1110      1120        

             1150      1160      1170      1180      1190      1200
b15878 GTTGAAGAAGTTGCAAGAGCAATTGATGATGCAATTGGAGTTGTCAAGTGTGCATTAGAA
        :::::::::::::::::::: : :: :::::  :::: :: ::    ::: :: : :::
b19322 ATTGAAGAAGTTGCAAGAGCAGTAGACGATGCTGTTGGTGTAGTTGGATGTACAATTGAA
     1130      1140      1150      1160      1170      1180        

             1210      1220      1230      1240      1250      1260
b15878 GAAGGTAAGATTGTTGCTGGTGGGGGAGCAACTGAGATAGAATTAGCTAAGAGATTAAGA
       :: ::::  :::::  ::::::: ::  :::: ::  : :::::: : : :: :::::::
b19322 GATGGTAGAATTGTATCTGGTGGAGGTTCAACAGAAGTTGAATTATCCATGAAATTAAGA
     1190      1200      1210      1220      1230      1240        

             1270      1280      1290      1300      1310      1320
b15878 AAATTCGCTGAAACAGTTGCTGGAAGAGAGCAGTTAGCAGTTAAGGCATTCGCTGATGCT
        ::: ::: :::  : ::   :::::::: ::  : :::::::  :::::::::::::::
b19322 GAATACGCAGAAGGAATTAGCGGAAGAGAACAACTCGCAGTTAGAGCATTCGCTGATGCT
     1250      1260      1270      1280      1290      1300        

             1330      1340      1350      1360      1370      1380
b15878 TTAGAAGTAATACCAAGAACATTAGCTGAGAACTCAGGATTAGACCCAATTGACATGCTC
       ::::::::::: :::::::: :::::::: ::: ::::: : ::: :::: :: :: :::
b19322 TTAGAAGTAATCCCAAGAACCTTAGCTGAAAACGCAGGACTCGACGCAATCGAAATCCTC
     1310      1320      1330      1340      1350      1360        

             1390      1400      1410      1420       1430         
b15878 GTTAAGTTGAGAGCTGCTCACGAGAAAGAAGGCGGAGAAGTCTAC-GGATTAGACGTCTT
       :::::  : ::::: :: ::::  ::  :: :   : :: : : : :: ::: :::: ::
b19322 GTTAAAGTTAGAGCAGCACACG-CAAGCAACGGCAACAAATGTGCAGGTTTAAACGTATT
     1370      1380      1390       1400      1410      1420       

    1440      1450      1460      1470      1480      1490         
b15878 CGAAGGAGAAGTAGTTGATATGATGGAGAAAGGGGTTGTTGAACCATTGAAAGTCAAGAC
       :   :::: ::: :  :: :::   :: :: :: :: ::::::::::: : ::: :: ::
b19322 CACCGGAGCAGTTGAAGACATGTGCGAAAACGGTGTAGTTGAACCATTAAGAGTTAAAAC
      1430      1440      1450      1460      1470      1480       

    1500      1510      1520      1530      1540      1550         
b15878 ACAGGCAATTGACTCAGCTACAGAGGCATCAGTCATGCTCTTAAGAATCGATGACGTCAT
       ::: :::::  : :::::  : ::  :: :::  ::: :  : :::::::: :: :: ::
b19322 ACAAGCAATCCAGTCAGCAGCTGAATCAACAGAAATGTTACTCAGAATCGACGATGTAAT
      1490      1500      1510      1520      1530      1540       

    1560      1570      1580      1590      1600      1610         
b15878 AGCTGCTGAGAAAGTTAAAGAAGACAAGGGAGGAGAAGGAGGAGACATGGGAGGAGGTGA
        :::::  :::::  : :::: ::    :     ::    ::::::::::: :::     
b19322 TGCTGC--AGAAAAATTAAGAGGA----GCTCCTGACATGGGAGACATGGGCGGAATGCC
      1550        1560          1570      1580      1590      1600 

    1620                              
b15878 CGAATTTTAA                     
                                      
b19322 AGGAATGGGCGGAATGCCAGGAATGATGTAA
            1610      1620      1630  

</pre>
<hr>
<A name=b10040>
<pre>
>><a onClick="window.open('getRecord.php?id=b10040',
                                'cpndb_record'); return false;" href="getRecord.php?id=b10040" target=_"blank">b10040</a> CP000742 Methanococcus vannielii SB              (1632 nt)
 initn: 4220 init1: 2619 opt: 4396  Z-score: 131.1  bits: 37.2 E(): 0.044
banded Smith-Waterman score: 4396; 75.5% identity (75.5% similar) in 1601 nt overlap (16-1614:4-1596)
<p>

               10        20        30        40        50        60
b15878 ATGGCAATGGCAGGAGCACCTATAGTAGTATTACCACAAAATGTTAAAAGATATGTTGGA
                      ::::    :: ::: :::::  ::::  : ::::: ::: : :::
b10040             ATGGCACAACCAGGAGTTTTACCTGAAAACATGAAAAGGTATATGGGA
                           10        20        30        40        

               70        80        90       100       110       120
b15878 AGAGACGCTCAAAGAATGAACATCTTAGCAGGTAGAATTATCGCTGAGACAGTTAGAACA
       ::::: ::::: ::::::::::: :::::::: :: :::::::: :: :: :: ::: ::
b10040 AGAGATGCTCAGAGAATGAACATTTTAGCAGGAAGGATTATCGCAGAAACCGTAAGATCA
       50        60        70        80        90       100        

              130       140       150       160       170       180
b15878 ACATTAGGACCAAAAGGAATGGACAAAATGTTAGTTGATGAATTAGGAGATATAGTTGTT
       ::: : :: ::::::::::::::::::::::::::::: :: ::::: ::  : ::::::
b10040 ACACTCGGCCCAAAAGGAATGGACAAAATGTTAGTTGACGATTTAGGTGACGTTGTTGTT
      110       120       130       140       150       160        

              190       200       210       220       230       240
b15878 ACAAACGACGGGGTTACAATATTAAAAGAAATGAGTGTTGAGCACCCAGCTGCTAAGATG
       ::::::::::: :::::::: :::: :::::::::::: :: ::::: :: ::::: :::
b10040 ACAAACGACGGAGTTACAATCTTAAGAGAAATGAGTGTAGAACACCCTGCAGCTAAAATG
      170       180       190       200       210       220        

              250       260       270       280       290       300
b15878 TTAATTGAAGTTGCTAAAACCCAAGAAAAAGAAGTTGGAGACGGTACAACAACAGCAGTC
       :::::::::::::: :::::::::::::::::::: ::::: ::::::::::: ::::: 
b10040 TTAATTGAAGTTGCAAAAACCCAAGAAAAAGAAGTAGGAGATGGTACAACAACCGCAGTT
      230       240       250       260       270       280        

              310       320       330       340       350       360
b15878 GTTATTGCTGGAGAGTTGTTAAGAAAAGCTGAAGAGTTGTTAGACCAAAACATCCACCCA
       ::  ::::::: :: :::::::::::::::::::: :: :: ::::::::: : ::::::
b10040 GTACTTGCTGGGGAATTGTTAAGAAAAGCTGAAGAATTATTGGACCAAAACGTACACCCA
      290       300       310       320       330       340        

              370       380       390       400       410       420
b15878 TCAGTCATCATCAATGGATACGAGATGGCAAGAAATAAAGCAATTGAAGAGTTAAAGTCA
        :: :: :  : :: :: ::: : :::::   : : :: :::   :::   :::::   :
b10040 ACAATCGTTGTTAAGGGTTACCAAATGGCTGCACAAAAGGCACAAGAAATTTTAAAAGAA
      350       360       370       380       390       400        

              430       440       450       460       470       480
b15878 GTTGCTAAAGAAGTTAAACCAGATGACACTGAAATGTTAAAGAAAATTGCAATGACATCA
       :::::    :: ::::   :: : :: :  ::: : ::::  ::::::::::::::::::
b10040 GTTGCATGTGACGTTAGTGCACAAGATAAAGAACTTTTAATAAAAATTGCAATGACATCA
      410       420       430       440       450       460        

              490       500       510       520       530       540
b15878 ATTACTGGTAAAGGAGCAGAGAAAGCAAGAGAGCAGTTAGCTGAAATCGTCGTTGAGGCA
       :: :: :: :: :: :: :: ::::: : ::: :: :::::::::::  ::::::: :::
b10040 ATCACCGGAAAGGGTGCTGAAAAAGCTAAAGAACAATTAGCTGAAATTATCGTTGACGCA
      470       480       490       500       510       520        

              550       560       570       580       590       600
b15878 GTTAGAACAGTTGTTGATGAAGAAACTGGAAAAGTTGATAAGGACTTAATTAAAGTTGAG
       :::  : :::::::::: :::::   :::::::::::: :: :::::::: ::: : :::
b10040 GTTTCAGCAGTTGTTGACGAAGA---TGGAAAAGTTGACAAAGACTTAATCAAAATCGAG
      530       540       550          560       570       580     

              610       620       630       640       650       660
b15878 AAGAAGGAAGGAGCTCCAATTGAAGAAACAACCTTAATTAGAGGAGTTGTTATTGACAAA
       :: ::: :::: ::  ::::::: :: ::    ::::: : ::: ::: :  ::::::::
b10040 AAAAAGCAAGGCGCATCAATTGACGACACTGAATTAATCAAAGGTGTTTTGGTTGACAAA
         590       600       610       620       630       640     

              670       680       690       700       710       720
b15878 GAGAGAGTCAACCCACAAATGCCAAAGAAAGTTGAAAACGCTAAGATTGCATTGTTAAAC
       :: ::::: : : : :::::::: :: :::::::  ::::: :: :::::: : ::::::
b10040 GAAAGAGTAAGCGCTCAAATGCCTAAAAAAGTTGTTAACGCAAAAATTGCACTCTTAAAC
         650       660       670       680       690       700     

              730       740       750       760       770       780
b15878 TGCCCAATTGAAGTCAAAGAAACAGAAACTGATGCAGAGATAAGAATTACTGACCCAGCT
       ::  :::::::: :::::::::: ::::: :::::::: :: :::::::::::::: :: 
b10040 TGTGCAATTGAAATCAAAGAAACCGAAACCGATGCAGAAATTAGAATTACTGACCCTGCA
         710       720       730       740       750       760     

              790       800       810       820       830       840
b15878 AAGTTAATGGAGTTCATTGAGCAAGAAGAGAAGATGATTAAAGACATGGTTGAGAAAATA
       :: :::::::: :::::::: :::::::: :: ::: : :::::::::::  :  :::: 
b10040 AAATTAATGGAATTCATTGAACAAGAAGAAAAAATGTTAAAAGACATGGTCAATGAAATC
         770       780       790       800       810       820     

              850       860       870       880       890       900
b15878 GCTGCTACAGGAGCTAATGTTGTCTTCTGTCAAAAAGGAATTGATGACTTAGCTCAGCAC
          :: :  :: :: :: :: :: :::::::::::::::::::: :::::::: :: :::
b10040 AAAGCAAGCGGTGCAAACGTAGTATTCTGTCAAAAAGGAATTGACGACTTAGCACAACAC
         830       840       850       860       870       880     

              910       920       930       940       950       960
b15878 TACTTAGCTAAGAAAGGAATCTTAGCAGTAAGAAGAGTTAAGAAGTCAGACATGGAGAAA
       : :::::::::  :::::::: : :: : :::::::::::: :: :: :::::::: :::
b10040 TTCTTAGCTAAAGAAGGAATCGTTGCTGCAAGAAGAGTTAAAAAATCCGACATGGAAAAA
         890       900       910       920       930       940     

              970       980       990      1000      1010      1020
b15878 TTAGCTAAAGCTACAGGAGCAAGAATAATAACAAAAATTGATGACTTAACACCAGAAGAC
        : :: ::::: :: :: ::::   :::: :  :: ::: : :::::::   : :  :: 
b10040 CTCGCAAAAGCAACCGGTGCAACCGTAATTAATAACATTAAAGACTTAAGCGCTGCTGAT
         950       960       970       980       990      1000     

             1030      1040      1050      1060      1070      1080
b15878 CTTGGAGAAGCTGGATTAGTTGAAGAGAGAAAAGTTGCTGGAGATGCAATGATATTCGTT
        : :: :: :::::: : ::::::::::  ::: :  : ::::: :::::::: ::::::
b10040 TTAGGGGACGCTGGAATCGTTGAAGAGAAGAAAATCTCAGGAGACGCAATGATTTTCGTT
        1010      1020      1030      1040      1050      1060     

             1090      1100      1110       1120      1130         
b15878 GAAGAGTGCAAGCATCCAAAGGCTGTAACAAT-CTTAGCAAGAGGTTCAACAGAGCACGT
       ::::: ::::: : :::::: :: :: ::::: :::: : :: ::: :::: :: :: ::
b10040 GAAGAATGCAAACTTCCAAAAGCAGTTACAATGCTTATC-AGGGGTACAACTGAACATGT
        1070      1080      1090      1100       1110      1120    

    1140      1150      1160      1170      1180      1190         
b15878 TGTTGAAGAAGTTGCAAGAGCAATTGATGATGCAATTGGAGTTGTCAAGTGTGCATTAGA
         : :::::::::::::::::: :::: :: ::  :::: :: ::    ::: :: : ::
b10040 AATCGAAGAAGTTGCAAGAGCAGTTGACGACGCTGTTGGTGTAGTTGCATGTACAATTGA
         1130      1140      1150      1160      1170      1180    

    1200      1210      1220      1230      1240      1250         
b15878 AGAAGGTAAGATTGTTGCTGGTGGGGGAGCAACTGAGATAGAATTAGCTAAGAGATTAAG
       ::: :: :: :: ::  : ::::::::  :::: ::  : :::::: :    ::::::::
b10040 AGATGGAAAAATCGTATCAGGTGGGGGTTCAACAGAAGTTGAATTATCCTTAAGATTAAG
         1190      1200      1210      1220      1230      1240    

    1260      1270      1280      1290      1300      1310         
b15878 AAAATTCGCTGAAACAGTTGCTGGAAGAGAGCAGTTAGCAGTTAAGGCATTCGCTGATGC
       : ::: ::: :::  : :    :::::::: ::  : ::::::: :::::: :: :::::
b10040 AGAATACGCAGAAGGAATCAGCGGAAGAGAACAACTCGCAGTTAGGGCATTTGCAGATGC
         1250      1260      1270      1280      1290      1300    

    1320      1330      1340      1350      1360      1370         
b15878 TTTAGAAGTAATACCAAGAACATTAGCTGAGAACTCAGGATTAGACCCAATTGACATGCT
       :::::: ::::: :: ::::: :::::::: ::: ::::: : ::  :::: :: :: ::
b10040 TTTAGAGGTAATTCCTAGAACTTTAGCTGAAAACGCAGGACTTGATGCAATCGAAATCCT
         1310      1320      1330      1340      1350      1360    

    1380      1390      1400      1410      1420       1430        
b15878 CGTTAAGTTGAGAGCTGCTCACGAGAAAGAAGGCGGAGAAGT-CTACGGATTAGACGTCT
       ::::::  : :: :: :: ::::  ::  :: :   : :::: :   :: ::: :::: :
b10040 CGTTAAAGTTAGGGCAGCACACG-CAAGCAACGGTAACAAGTGCGCAGGTTTAAACGTAT
         1370      1380       1390      1400      1410      1420   

     1440      1450      1460      1470      1480      1490        
b15878 TCGAAGGAGAAGTAGTTGATATGATGGAGAAAGGGGTTGTTGAACCATTGAAAGTCAAGA
       ::  :::: : :: :  ::::::   :  :: :: :::::::::::::: : ::: :: :
b10040 TCACAGGAAACGTTGAAGATATGTGTGCAAACGGCGTTGTTGAACCATTAAGAGTTAAAA
          1430      1440      1450      1460      1470      1480   

     1500      1510      1520      1530      1540      1550        
b15878 CACAGGCAATTGACTCAGCTACAGAGGCATCAGTCATGCTCTTAAGAATCGATGACGTCA
       : :: ::: :: : :::::  ::::  :: :::  ::: :  : :::::::::::::: :
b10040 CTCAAGCAGTTCAATCAGCAGCAGAATCAACAGAAATGTTACTCAGAATCGATGACGTAA
          1490      1500      1510      1520      1530      1540   

     1560      1570      1580      1590      1600      1610        
b15878 TAGCTGCTGAGAAAGTTAAAGAAGACAAGGGAGGAGAAGGAGGAGACATGGGAGGAGGTG
       : ::::: :: ::: : : ::  : :   : :   ::    :: :::::::: :::    
b10040 TTGCTGCAGAAAAATTAAGAGGTGGC---GCACCTGACATGGGCGACATGGGCGGAATGG
          1550      1560         1570      1580      1590      1600

     1620                              
b15878 ACGAATTTTAA                     
                                       
b10040 GAGGTATGGGCGGAATGGGAGGAATGATGTAA
             1610      1620      1630  

</pre>
<hr>
<A name=b9969>
<pre>
>><a onClick="window.open('getRecord.php?id=b9969',
                                'cpndb_record'); return false;" href="getRecord.php?id=b9969" target=_"blank">b9969</a> CP000609 Methanococcus maripaludis C5             (1638 nt)
 initn: 4226 init1: 2611 opt: 4394  Z-score: 131.0  bits: 37.2 E(): 0.044
banded Smith-Waterman score: 4394; 75.4% identity (75.4% similar) in 1594 nt overlap (25-1614:13-1602)
<p>

               10        20        30        40        50        60
b15878 ATGGCAATGGCAGGAGCACCTATAGTAGTATTACCACAAAATGTTAAAAGATATGTTGGA
                               : ::: :::::  ::::: : :: :::::  : :::
b9969              ATGGCACAACCCGGAGTTTTACCTGAAAATATGAAGAGATACATGGGA
                           10        20        30        40        

               70        80        90       100       110       120
b15878 AGAGACGCTCAAAGAATGAACATCTTAGCAGGTAGAATTATCGCTGAGACAGTTAGAACA
       ::::: :::::::::::::::::::::::::: ::::: ::::: :: ::::: ::: ::
b9969  AGAGATGCTCAAAGAATGAACATCTTAGCAGGAAGAATCATCGCAGAAACAGTAAGATCA
       50        60        70        80        90       100        

              130       140       150       160       170       180
b15878 ACATTAGGACCAAAAGGAATGGACAAAATGTTAGTTGATGAATTAGGAGATATAGTTGTT
       ::: : :: ::::::::::::::::::::::::::::: :: ::::::::  ::::::::
b9969  ACACTCGGTCCAAAAGGAATGGACAAAATGTTAGTTGACGACTTAGGAGACGTAGTTGTT
      110       120       130       140       150       160        

              190       200       210       220       230       240
b15878 ACAAACGACGGGGTTACAATATTAAAAGAAATGAGTGTTGAGCACCCAGCTGCTAAGATG
       ::::::::::: :::::::: :::: :::::::::::: :: ::::: :: ::::: :::
b9969  ACAAACGACGGTGTTACAATCTTAAGAGAAATGAGTGTAGAACACCCTGCAGCTAAAATG
      170       180       190       200       210       220        

              250       260       270       280       290       300
b15878 TTAATTGAAGTTGCTAAAACCCAAGAAAAAGAAGTTGGAGACGGTACAACAACAGCAGTC
       ::::: :::::::: ::::: :: ::::::::::: :: ::::::::::::::::: :: 
b9969  TTAATCGAAGTTGCAAAAACACAGGAAAAAGAAGTCGGCGACGGTACAACAACAGCTGTT
      230       240       250       260       270       280        

              310       320       330       340       350       360
b15878 GTTATTGCTGGAGAGTTGTTAAGAAAAGCTGAAGAGTTGTTAGACCAAAACATCCACCCA
       ::  ::::::: :: :: ::::::::::::::::: :: :: ::::::::  : ::::::
b9969  GTAGTTGCTGGTGAATTATTAAGAAAAGCTGAAGAATTATTGGACCAAAATGTACACCCA
      290       300       310       320       330       340        

              370       380       390       400       410       420
b15878 TCAGTCATCATCAATGGATACGAGATGGCAAGAAATAAAGCAATTGAAGAGTTAAAGTCA
        :: :  :  : :: :::::: : ::::::    : :::::    :::   ::::: :::
b9969  ACAATTGTTGTAAAAGGATACCAAATGGCAGCTCAAAAAGCTCAAGAATTATTAAAATCA
      350       360       370       380       390       400        

              430       440       450       460       470       480
b15878 GTTGCTAAAGAAGTTAAACCAGATGACACTGAAATGTTAAAGAAAATTGCAATGACATCA
        :::::   ::::::  : :  : ::::  ::::: ::::  ::::: :::::::: :::
b9969  ATTGCTTGCGAAGTTGGAGCTCAAGACAAAGAAATCTTAACCAAAATCGCAATGACTTCA
      410       420       430       440       450       460        

              490       500       510       520       530       540
b15878 ATTACTGGTAAAGGAGCAGAGAAAGCAAGAGAGCAGTTAGCTGAAATCGTCGTTGAGGCA
       :: :: :: ::::: :: :: ::::: : :::  : :::::::: ::: ::::::: :::
b9969  ATCACCGGAAAAGGTGCTGAAAAAGCTAAAGAAAAATTAGCTGACATCATCGTTGATGCA
      470       480       490       500       510       520        

              550       560       570       580       590       600
b15878 GTTAGAACAGTTGTTGATGAAGAAACTGGAAAAGTTGATAAGGACTTAATTAAAGTTGAG
       :::  : :::: ::::: ::::::   ::::::::::: :: :::::::: ::: :::::
b9969  GTTTCAGCAGTAGTTGACGAAGAA---GGAAAAGTTGACAAAGACTTAATCAAAATTGAG
      530       540       550          560       570       580     

              610       620       630       640       650       660
b15878 AAGAAGGAAGGAGCTCCAATTGAAGAAACAACCTTAATTAGAGGAGTTGTTATTGACAAA
       :: ::   ::: ::  :::: :: :: ::    ::::: : ::: ::: :  ::::::::
b9969  AAAAAATCAGGCGCATCAATCGACGACACCGAATTAATCAAAGGTGTTTTAGTTGACAAA
         590       600       610       620       630       640     

              670       680       690       700       710       720
b15878 GAGAGAGTCAACCCACAAATGCCAAAGAAAGTTGAAAACGCTAAGATTGCATTGTTAAAC
       :: ::::: : : : :::::::: :: :::::     :  : :: :::::: : ::::::
b9969  GAAAGAGTAAGCGCTCAAATGCCTAAAAAAGTAACTGATTCAAAAATTGCACTCTTAAAC
         650       660       670       680       690       700     

              730       740       750       760       770       780
b15878 TGCCCAATTGAAGTCAAAGAAACAGAAACTGATGCAGAGATAAGAATTACTGACCCAGCT
       ::  :::: ::: :::::::::::::::: :: ::::: :: ::::: :::::::: :: 
b9969  TGTGCAATCGAAATCAAAGAAACAGAAACAGACGCAGAAATCAGAATCACTGACCCTGCA
         710       720       730       740       750       760     

              790       800       810       820       830       840
b15878 AAGTTAATGGAGTTCATTGAGCAAGAAGAGAAGATGATTAAAGACATGGTTGAGAAAATA
       :: :::::::: ::::: :: :::::::: :: ::: : :::::::::::::   :::: 
b9969  AAATTAATGGAATTCATCGAACAAGAAGAAAAAATGTTAAAAGACATGGTTGCTGAAATC
         770       780       790       800       810       820     

              850       860       870       880       890       900
b15878 GCTGCTACAGGAGCTAATGTTGTCTTCTGTCAAAAAGGAATTGATGACTTAGCTCAGCAC
          :: :  :: :: :: ::: : ::::::::::::::::: ::::::::::: :: :::
b9969  AAAGCAAGCGGTGCAAACGTTTTATTCTGTCAAAAAGGAATCGATGACTTAGCACAACAC
         830       840       850       860       870       880     

              910       920       930       940       950       960
b15878 TACTTAGCTAAGAAAGGAATCTTAGCAGTAAGAAGAGTTAAGAAGTCAGACATGGAGAAA
       :::::::::::  :::::::: : :: : :::::::::::: :: :: :::::::: :::
b9969  TACTTAGCTAAAGAAGGAATCATGGCTGCAAGAAGAGTTAAAAAATCCGACATGGAAAAA
         890       900       910       920       930       940     

              970       980       990      1000      1010      1020
b15878 TTAGCTAAAGCTACAGGAGCAAGAATAATAACAAAAATTGATGACTTAACACCAGAAGAC
       :::::::::::::: :: :: :   :::: ::::: ::  : ::: :  :: : ::::::
b9969  TTAGCTAAAGCTACCGGTGCTAACGTAATTACAAACATCAAAGACCTGTCAGCTGAAGAC
         950       960       970       980       990      1000     

             1030      1040      1050      1060      1070      1080
b15878 CTTGGAGAAGCTGGATTAGTTGAAGAGAGAAAAGTTGCTGGAGATGCAATGATATTCGTT
        : :: :: :: ::  : :::::::: :::::: :  : :::::: ::::::: ::::: 
b9969  TTAGGTGATGCAGGTCTCGTTGAAGAAAGAAAAATCTCCGGAGATTCAATGATCTTCGTA
        1010      1020      1030      1040      1050      1060     

             1090      1100      1110      1120      1130      1140
b15878 GAAGAGTGCAAGCATCCAAAGGCTGTAACAATCTTAGCAAGAGGTTCAACAGAGCACGTT
       ::::: ::::: :: ::::: :: :: :::::  :    :::::: :::: :: ::::: 
b9969  GAAGAATGCAAACACCCAAAAGCAGTTACAATGCTCATCAGAGGTACAACTGAACACGTA
        1070      1080      1090      1100      1110      1120     

             1150      1160      1170      1180      1190      1200
b15878 GTTGAAGAAGTTGCAAGAGCAATTGATGATGCAATTGGAGTTGTCAAGTGTGCATTAGAA
        :::::::::::::::::::: : :: :: ::  :::: :: ::    ::: :  : :::
b9969  ATTGAAGAAGTTGCAAGAGCAGTGGACGACGCTGTTGGTGTAGTTGCATGTACTATCGAA
        1130      1140      1150      1160      1170      1180     

             1210      1220      1230      1240      1250      1260
b15878 GAAGGTAAGATTGTTGCTGGTGGGGGAGCAACTGAGATAGAATTAGCTAAGAGATTAAGA
       :: :: :  :: :: :::::::: ::  :::: ::  : :::::: : : :: :::::::
b9969  GATGGAAGAATCGTAGCTGGTGGAGGTTCAACAGAAGTTGAATTATCCATGAAATTAAGA
        1190      1200      1210      1220      1230      1240     

             1270      1280      1290      1300      1310      1320
b15878 AAATTCGCTGAAACAGTTGCTGGAAGAGAGCAGTTAGCAGTTAAGGCATTCGCTGATGCT
        ::: ::: :::  : :    :::::::: ::  : :: :::: ::::::::::::::::
b9969  GAATACGCAGAAGGAATCAGCGGAAGAGAACAACTTGCTGTTAGGGCATTCGCTGATGCT
        1250      1260      1270      1280      1290      1300     

             1330      1340      1350      1360      1370      1380
b15878 TTAGAAGTAATACCAAGAACATTAGCTGAGAACTCAGGATTAGACCCAATTGACATGCTC
       ::::::::::: :::::::: :::::::: ::  ::::: : ::  :::: :: :: :::
b9969  TTAGAAGTAATCCCAAGAACCTTAGCTGAAAATGCAGGACTCGATGCAATCGAAATCCTC
        1310      1320      1330      1340      1350      1360     

             1390      1400      1410      1420       1430         
b15878 GTTAAGTTGAGAGCTGCTCACGAGAAAGAAGGCGGAGAAGT-CTACGGATTAGACGTCTT
       :::::  : ::::: :: ::::  ::  :: :   : :::: :   :: ::: :::: ::
b9969  GTTAAAGTTAGAGCAGCACACG-CAAGCAACGGCAACAAGTGCGCAGGTTTAAACGTATT
        1370      1380       1390      1400      1410      1420    

    1440      1450      1460      1470      1480      1490         
b15878 CGAAGGAGAAGTAGTTGATATGATGGAGAAAGGGGTTGTTGAACCATTGAAAGTCAAGAC
       :   :::::::: :  :: :::   :: :: :: :::::::::::::: : ::: :: ::
b9969  CACCGGAGAAGTTGAAGACATGTGCGACAACGGTGTTGTTGAACCATTAAGAGTTAAAAC
         1430      1440      1450      1460      1470      1480    

    1500      1510      1520      1530      1540      1550         
b15878 ACAGGCAATTGACTCAGCTACAGAGGCATCAGTCATGCTCTTAAGAATCGATGACGTCAT
       ::: :::::  : :::::  : ::  :: :::  ::: :  : :::::::: ::::: ::
b9969  ACAAGCAATCCAGTCAGCAGCTGAATCAACAGAAATGTTACTCAGAATCGACGACGTAAT
         1490      1500      1510      1520      1530      1540    

    1560      1570      1580         1590      1600      1610      
b15878 AGCTGCTGAGAAAGTTAAAGAAGAC---AAGGGAGGAGAAGGAGGAGACATGGGAGGAGG
        ::::: :: ::: : : ::  : :    :    :: ::    :::: :::::: :::  
b9969  TGCTGCAGAAAAATTAAGAGGCGGCCCTGACATGGGTGACATGGGAGGCATGGGCGGAAT
         1550      1560      1570      1580      1590      1600    

       1620                              
b15878 TGACGAATTTTAA                     
                                         
b9969  GGGAGGCATGGGCGGAATGCCAGGAATGATGTAA
         1610      1620      1630        

</pre>
<hr>
<A name=b16538>
<pre>
>><a onClick="window.open('getRecord.php?id=b16538',
                                'cpndb_record'); return false;" href="getRecord.php?id=b16538" target=_"blank">b16538</a> NC_014222 Methanococcus voltae A3                (1644 nt)
 initn: 4324 init1: 2400 opt: 4375  Z-score: 130.6  bits: 37.1 E(): 0.046
banded Smith-Waterman score: 4375; 75.2% identity (75.2% similar) in 1610 nt overlap (7-1614:19-1617)
<p>

                           10        20        30        40        
b15878             ATGGCAATGGCAGGAGCACCTATAGTAGTATTACCACAAAATGTTAAA
                         ::::::::  ::  :  ::  ::::::::  ::::: : :::
b16538 ATGGCAAGAGGTGCTATTATGGCAGGTCCAAATCAAGGTGTATTACCTGAAAATATGAAA
               10        20        30        40        50        60

       50        60        70        80        90       100        
b15878 AGATATGTTGGAAGAGACGCTCAAAGAATGAACATCTTAGCAGGTAGAATTATCGCTGAG
       :::::  : :: ::::: ::::::::::::::::::::::: :::::::: :::::::: 
b16538 AGATACATGGGTAGAGATGCTCAAAGAATGAACATCTTAGCTGGTAGAATAATCGCTGAA
               70        80        90       100       110       120

      110       120       130       140       150       160        
b15878 ACAGTTAGAACAACATTAGGACCAAAAGGAATGGACAAAATGTTAGTTGATGAATTAGGA
       :: :::::  :::::::::: :::::::: ::::: ::::::::::: :: ::  : :::
b16538 ACCGTTAGGTCAACATTAGGTCCAAAAGGTATGGATAAAATGTTAGTAGACGATATGGGA
              130       140       150       160       170       180

      170       180       190       200       210       220        
b15878 GATATAGTTGTTACAAACGACGGGGTTACAATATTAAAAGAAATGAGTGTTGAGCACCCA
       ::  : ::::: :::::::: :: :: ::::: :::: ::::::::::::::: ::::: 
b16538 GACGTTGTTGTAACAAACGATGGTGTAACAATCTTAAGAGAAATGAGTGTTGAACACCCG
              190       200       210       220       230       240

      230       240       250       260       270       280        
b15878 GCTGCTAAGATGTTAATTGAAGTTGCTAAAACCCAAGAAAAAGAAGTTGGAGACGGTACA
       :::::::: :::::::: ::::: ::::::::::::::::::::::::::::::::::::
b16538 GCTGCTAAAATGTTAATCGAAGTAGCTAAAACCCAAGAAAAAGAAGTTGGAGACGGTACA
              250       260       270       280       290       300

      290       300       310       320       330       340        
b15878 ACAACAGCAGTCGTTATTGCTGGAGAGTTGTTAAGAAAAGCTGAAGAGTTGTTAGACCAA
       ::::: :: :: ::::  ::::: :: :: ::::::::::: ::::: :: :::::::::
b16538 ACAACCGCTGTTGTTACAGCTGGTGAATTATTAAGAAAAGCAGAAGAATTATTAGACCAA
              310       320       330       340       350       360

      350       360       370       380       390       400        
b15878 AACATCCACCCATCAGTCATCATCAATGGATACGAGATGGCAAGAAATAAAGCAATTGAA
       ::: : :::::: :: :  :  : :: :::::: : :::::     : :::      :::
b16538 AACGTACACCCAACAATTGTTGTTAAAGGATACCAAATGGCTGCTCAAAAATGTCAAGAA
              370       380       390       400       410       420

      410       420       430       440       450       460        
b15878 GAGTTAAAGTCAGTTGCTAAAGAAGTTAAACCAGATGACACTGAAATGTTAAAGAAAATT
       :  :::::   : :::::   ::::: :   :::: ::::  ::::: ::::  ::::: 
b16538 GTTTTAAAAGAAATTGCTTGTGAAGTAAGTTCAGAAGACAAGGAAATCTTAACAAAAATC
              430       440       450       460       470       480

      470       480       490       500       510       520        
b15878 GCAATGACATCAATTACTGGTAAAGGAGCAGAGAAAGCAAGAGAGCAGTTAGCTGAAATC
       :::::::: ::::: :: :::::::: :: :: ::::: : ::   : :::::::: :::
b16538 GCAATGACCTCAATCACCGGTAAAGGTGCTGAAAAAGCTAAAGCTAAATTAGCTGATATC
              490       500       510       520       530       540

      530       540       550       560       570       580        
b15878 GTCGTTGAGGCAGTTAGAACAGTTGTTGATGAAGAAACTGGAAAAGTTGATAAGGACTTA
        : ::::: :: ::   : ::: :::  : :  ::::  ::: ::::::: :: ::::::
b16538 ATTGTTGATGCCGT---ATCAGCTGT--AAG-CGAAAACGGAGAAGTTGAAAAAGACTTA
              550          560          570       580       590    

      590       600       610       620       630       640        
b15878 ATTAAAGTTGAGAAGAAGGAAGGAGCTCCAATTGAAGAAACAACCTTAATTAGAGGAGTT
       :: ::: ::::::: :: :  :: ::: :::: :: :::::    ::: ::: ::: :::
b16538 ATCAAAATTGAGAAAAAAGCTGGTGCTTCAATCGATGAAACCGAATTAGTTAAAGGTGTT
          600       610       620       630       640       650    

      650       660       670       680       690       700        
b15878 GTTATTGACAAAGAGAGAGTCAACCCACAAATGCCAAAGAAAGTTGAAAACGCTAAGATT
        : :: :::::::: ::::: : : :::::::::: :: :::::::::   ::::: :::
b16538 TTAATCGACAAAGAAAGAGTAAGCGCACAAATGCCTAAAAAAGTTGAAGGTGCTAAAATT
          660       670       680       690       700       710    

      710       720       730       740       750       760        
b15878 GCATTGTTAAACTGCCCAATTGAAGTCAAAGAAACAGAAACTGATGCAGAGATAAGAATT
       ::::: ::::::::  :::::::::: :::::::: ::::: :::::::: :: ::::::
b16538 GCATTATTAAACTGTGCAATTGAAGTAAAAGAAACTGAAACAGATGCAGAAATCAGAATT
          720       730       740       750       760       770    

      770       780       790       800       810       820        
b15878 ACTGACCCAGCTAAGTTAATGGAGTTCATTGAGCAAGAAGAGAAGATGATTAAAGACATG
       :: ::::: :: :: :::::::: ::::: :: :::::::: :: ::: : :::::::::
b16538 ACAGACCCTGCAAAATTAATGGAATTCATCGAACAAGAAGAAAAAATGTTAAAAGACATG
          780       790       800       810       820       830    

      830       840       850       860       870       880        
b15878 GTTGAGAAAATAGCTGCTACAGGAGCTAATGTTGTCTTCTGTCAAAAAGGAATTGATGAC
       :::    ::::        ::::::::: :::: : :::::::::::::: :: ::::: 
b16538 GTTCTCGAAATTAAAAACGCAGGAGCTACTGTTTTATTCTGTCAAAAAGGTATCGATGAT
          840       850       860       870       880       890    

      890       900       910       920       930       940        
b15878 TTAGCTCAGCACTACTTAGCTAAGAAAGGAATCTTAGCAGTAAGAAGAGTTAAGAAGTCA
       ::::: :: ::::::::::::::  :::::::: : :: : :::::::::::: :: :::
b16538 TTAGCACAACACTACTTAGCTAAAGAAGGAATCATGGCTGCAAGAAGAGTTAAAAAATCA
          900       910       920       930       940       950    

      950       960       970       980       990      1000        
b15878 GACATGGAGAAATTAGCTAAAGCTACAGGAGCAAGAATAATAACAAAAATTGATGACTTA
       :::::::: :::::::: :::::::: :: :: :  :: :: ::::: ::  : ::::: 
b16538 GACATGGAAAAATTAGCAAAAGCTACCGGTGCTAACATTATTACAAACATCAAAGACTTG
          960       970       980       990      1000      1010    

     1010      1020      1030      1040      1050      1060        
b15878 ACACCAGAAGACCTTGGAGAAGCTGGATTAGTTGAAGAGAGAAAAGTTGCTGGAGATGCA
        :: : :::::: : :: :: :::::: : :: :::::   :  : :  : :::::   :
b16538 TCAGCTGAAGACTTAGGTGATGCTGGAATCGTAGAAGAAGAAGTAATCTCAGGAGACAAA
         1020      1030      1040      1050      1060      1070    

     1070      1080      1090      1100      1110      1120        
b15878 ATGATATTCGTTGAAGAGTGCAAGCATCCAAAGGCTGTAACAATCTTAGCAAGAGGTTCA
       :::::::: ::: :::::::::: : ::: :: :: :: :: :: :::   :::::: ::
b16538 ATGATATTTGTTAAAGAGTGCAAACTTCCTAAAGCAGTTACCATGTTAATCAGAGGTACA
         1080      1090      1100      1110      1120      1130    

     1130      1140      1150      1160      1170      1180        
b15878 ACAGAGCACGTTGTTGAAGAAGTTGCAAGAGCAATTGATGATGCAATTGGAGTTGTCAAG
       :: :: :::::: : :::::::: ::::::::  :::: :: :: :: :: :::::    
b16538 ACTGACCACGTTATCGAAGAAGTAGCAAGAGCTGTTGACGACGCTATCGGTGTTGTAGCA
         1140      1150      1160      1170      1180      1190    

     1190      1200      1210      1220      1230      1240        
b15878 TGTGCATTAGAAGAAGGTAAGATTGTTGCTGGTGGGGGAGCAACTGAGATAGAATTAGCT
       ::: :: : ::::: :: :: :: ::: : ::::: ::  :::: ::  : :::::  : 
b16538 TGTACAATCGAAGATGGCAAAATCGTTTCAGGTGGAGGTTCAACAGAAGTTGAATTGTCC
         1200      1210      1220      1230      1240      1250    

     1250      1260      1270      1280      1290      1300        
b15878 AAGAGATTAAGAAAATTCGCTGAAACAGTTGCTGGAAGAGAGCAGTTAGCAGTTAAGGCA
       : :: ::::::: :::::::::::  : : : ::::::::: :: ::::: ::::  :: 
b16538 ATGAAATTAAGAGAATTCGCTGAAGGAATCGATGGAAGAGAACAATTAGCTGTTAGAGCT
         1260      1270      1280      1290      1300      1310    

     1310      1320      1330      1340      1350      1360        
b15878 TTCGCTGATGCTTTAGAAGTAATACCAAGAACATTAGCTGAGAACTCAGGATTAGACCCA
       ::::::::::::::::::::::: ::::::::::::::::: ::: : :: :::::  : 
b16538 TTCGCTGATGCTTTAGAAGTAATTCCAAGAACATTAGCTGAAAACGCTGGTTTAGATGCT
         1320      1330      1340      1350      1360      1370    

     1370      1380      1390      1400      1410      1420        
b15878 ATTGACATGCTCGTTAAGTTGAGAGCTGCTCACGAGAAAGAAGGCGGAGAAGTCTACGGA
       :: :: ::  : ::::   : :::::::::::::     :  :::    ::  :   :: 
b16538 ATCGAAATCTTAGTTAGAGTAAGAGCTGCTCACG---CTGGTGGCAACAAATGCGCTGGT
         1380      1390      1400         1410      1420      1430 

     1430      1440      1450      1460      1470      1480        
b15878 TTAGACGTCTTCGAAGGAGAAGTAGTTGATATGATGGAGAAAGGGGTTGTTGAACCATTG
       ::: :::: :::   :::::::: :  ::::::   :: :: :: :::::::::::::: 
b16538 TTAAACGTATTCACTGGAGAAGTTGAAGATATGTGTGAAAACGGCGTTGTTGAACCATTA
            1440      1450      1460      1470      1480      1490 

     1490      1500      1510      1520      1530      1540        
b15878 AAAGTCAAGACACAGGCAATTGACTCAGCTACAGAGGCATCAGTCATGCTCTTAAGAATC
       : ::: :: :: :: :: ::  : :::::: : ::  :: :::  ::: : :::::::: 
b16538 AGAGTAAAAACGCAAGCTATCCAATCAGCTGCTGAATCAACAGAAATGTTATTAAGAATT
            1500      1510      1520      1530      1540      1550 

     1550      1560      1570      1580       1590       1600      
b15878 GATGACGTCATAGCTGCTGAGAAAGTTAAAGAAG-ACAAGGGA-GGAGAAGGAGGAGACA
       ::::: :: :: :::::::: ::: : : ::  :  : ::  : ::: : :  :: :  :
b16538 GATGATGTAATTGCTGCTGAAAAATTAAGAGGCGCTCCAGATATGGATATG--GGCGGAA
            1560      1570      1580      1590      1600           

       1610      1620                     
b15878 TGGGAGGAGGTGACGAATTTTAA            
       :::: :::                           
b16538 TGGGCGGAATGGGCGGTATGCCTCCTATGATGTAA
    1610      1620      1630      1640    

</pre>
<hr>
<A name=b15789>
<pre>
>><a onClick="window.open('getRecord.php?id=b15789',
                                'cpndb_record'); return false;" href="getRecord.php?id=b15789" target=_"blank">b15789</a> CP000743 Methanococcus aeolicus Nankai-3         (1632 nt)
 initn: 4167 init1: 2641 opt: 4348  Z-score: 130.0  bits: 37.0 E(): 0.05
banded Smith-Waterman score: 4348; 74.9% identity (74.9% similar) in 1613 nt overlap (7-1614:1-1605)
<p>

               10        20        30        40        50        60
b15878 ATGGCAATGGCAGGAGCACCTATAGTAGTATTACCACAAAATGTTAAAAGATATGTTGGA
             ::: ::::   ::::: :   ::: : ::: :: :::: ::::::::  : :::
b15789       ATGTCAGG---ACCTACAAATGTAATGCCAGAACATGTAAAAAGATACATGGGA
                        10        20        30        40        50 

               70        80        90       100       110       120
b15878 AGAGACGCTCAAAGAATGAACATCTTAGCAGGTAGAATTATCGCTGAGACAGTTAGAACA
       ::::: ::::::::::::::::: :::::::: :::::::: :: :: ::::::::: ::
b15789 AGAGATGCTCAAAGAATGAACATATTAGCAGGAAGAATTATTGCGGAAACAGTTAGATCA
              60        70        80        90       100       110 

              130       140       150       160       170       180
b15878 ACATTAGGACCAAAAGGAATGGACAAAATGTTAGTTGATGAATTAGGAGATATAGTTGTT
       :::::::: :::::::::::::::::::::::::::::::: ::::: :: :::::: : 
b15789 ACATTAGGGCCAAAAGGAATGGACAAAATGTTAGTTGATGATTTAGGGGACATAGTTATC
             120       130       140       150       160       170 

              190       200       210       220       230       240
b15878 ACAAACGACGGGGTTACAATATTAAAAGAAATGAGTGTTGAGCACCCAGCTGCTAAGATG
       ::::::::::: :: ::::: :::::::::::::::::::: ::::::::::: :: :::
b15789 ACAAACGACGGTGTAACAATCTTAAAAGAAATGAGTGTTGAACACCCAGCTGCAAAAATG
             180       190       200       210       220       230 

              250       260       270       280       290       300
b15878 TTAATTGAAGTTGCTAAAACCCAAGAAAAAGAAGTTGGAGACGGTACAACAACAGCAGTC
       ::::::::::: :::::::: :: :: :: ::::: :: ::::: :: ::: : ::::: 
b15789 TTAATTGAAGTAGCTAAAACACAGGAGAAGGAAGTAGGTGACGGAACCACATCCGCAGTT
             240       250       260       270       280       290 

              310       320       330       340       350       360
b15878 GTTATTGCTGGAGAGTTGTTAAGAAAAGCTGAAGAGTTGTTAGACCAAAACATCCACCCA
        :  : :: ::::: :: ::::::::::: ::::: :: :::::::::::  : :: :::
b15789 ATCGTAGCAGGAGAATTATTAAGAAAAGCAGAAGAATTATTAGACCAAAATGTTCATCCA
             300       310       320       330       340       350 

              370       380       390       400        410         
b15878 TCAGTCATCATCAATGGATACGAGATGGCAAGAAATAAAG-CAATTGAAGAGTTAAAGTC
        :: : :: ::::: :::::: :: : :::      ::::   :  : : : : ::::  
b15789 ACAATGATAATCAAAGGATACCAGTTAGCACTTGGAAAAGTTCAGAGCATATTAAAAGAT
             360       370       380       390       400       410 

     420       430       440       450       460       470         
b15878 AGTTGCTAAAGAAGTTAAACCAGATGACACTGAAATGTTAAAGAAAATTGCAATGACATC
       : : :::: :  :::: :   ::: :: :  ::: : :::::::::::::: :::::  :
b15789 A-TGGCTACAACAGTTGATGTAGAAGATAAAGAATTATTAAAGAAAATTGCCATGACTGC
              420       430       440       450       460       470

     480       490       500       510       520       530         
b15878 AATTACTGGTAAAGGAGCAGAGAAAGCAAGAGAGCAGTTAGCTGAAATCGTCGTTGAGGC
       :::::: :: :::::::: :: :: :::: ::  ::  :::: :::::: : :: :: ::
b15789 AATTACAGGAAAAGGAGCTGAAAAGGCAAAAGGACATATAGCAGAAATCATTGTAGATGC
              480       490       500       510       520       530

     540       550       560       570       580       590         
b15878 AGTTAGAACAGTTGTTGATGAAGAAACTGGAAAAGTTGATAAGGACTTAATTAAAGTTGA
        :: :   :::::::::::: :::   ::: ::: : :: :  ::: : :: ::: : ::
b15789 TGTAACCTCAGTTGTTGATGGAGA---TGGTAAAATCGACACAGACCTCATAAAAATAGA
              540       550          560       570       580       

     600       610       620       630       640       650         
b15878 GAAGAAGGAAGGAGCTCCAATTGAAGAAACAACCTTAATTAGAGGAGTTGTTATTGACAA
       ::: :: ::::::  : :  :::: :::::: :  :::::: :::: :  : :: :::::
b15789 GAAAAAAGAAGGAATTGCTGTTGAGGAAACATCACTAATTAAAGGAATCTTAATCGACAA
       590       600       610       620       630       640       

     660       670       680       690       700       710         
b15878 AGAGAGAGTCAACCCACAAATGCCAAAGAAAGTTGAAAACGCTAAGATTGCATTGTTAAA
       ::: ::::: :: ::::::::::: :: ::::::::: : :: :: :: ::::: :::::
b15789 AGAAAGAGTAAATCCACAAATGCCTAAAAAAGTTGAAGATGCAAAAATCGCATTATTAAA
       650       660       670       680       690       700       

     720       730       740       750       760       770         
b15878 CTGCCCAATTGAAGTCAAAGAAACAGAAACTGATGCAGAGATAAGAATTACTGACCCAGC
       ::::::::::::: : :::   :::::::: :::::: : :: :: :: :: :::::  :
b15789 CTGCCCAATTGAAATAAAAAGCACAGAAACAGATGCAAAAATCAGCATAACCGACCCTAC
       710       720       730       740       750       760       

     780       790       800       810       820       830         
b15878 TAAGTTAATGGAGTTCATTGAGCAAGAAGAGAAGATGATTAAAGACATGGTTGAGAAAAT
        ::  : ::::: :::::::: :::::::: :: ::: : ::::::::::::::  ::::
b15789 GAAAATGATGGAATTCATTGAACAAGAAGAAAAAATGTTAAAAGACATGGTTGAAGAAAT
       770       780       790       800       810       820       

     840       850       860       870       880       890         
b15878 AGCTGCTACAGGAGCTAATGTTGTCTTCTGTCAAAAAGGAATTGATGACTTAGCTCAGCA
       :   ::  : :: ::::::::  :  : ::::::::::::::::::::::::::::::::
b15789 AAAAGCATCTGGTGCTAATGTATTAGTATGTCAAAAAGGAATTGATGACTTAGCTCAGCA
       830       840       850       860       870       880       

     900       910       920       930       940       950         
b15878 CTACTTAGCTAAGAAAGGAATCTTAGCAGTAAGAAGAGTTAAGAAGTCAGACATGGAGAA
       :::: :::: ::    ::::: :::::: : ::::::::::: :: :::::::: :: ::
b15789 CTACCTAGCAAAAGCTGGAATATTAGCAATTAGAAGAGTTAAAAAATCAGACATTGAAAA
       890       900       910       920       930       940       

     960       970       980       990      1000      1010         
b15878 ATTAGCTAAAGCTACAGGAGCAAGAATAATAACAAAAATTGATGACTTAACACCAGAAGA
       :::: : ::::: :::::::: :  :: ::  :::: ::: : :: :::::: : :: ::
b15789 ATTAACAAAAGCGACAGGAGCTAACATTATTTCAAACATTAAAGATTTAACAGCTGATGA
       950       960       970       980       990      1000       

    1020      1030      1040      1050      1060      1070         
b15878 CCTTGGAGAAGCTGGATTAGTTGAAGAGAGAAAAGTTGCTGGAGATGCAATGATATTCGT
         : :: ::::::::  : :: : :::   ::::::::: :::::    :::::::: ::
b15789 TTTAGGGGAAGCTGGCGTTGTAGTAGAAGAAAAAGTTGCCGGAGACAATATGATATTTGT
      1010      1020      1030      1040      1050      1060       

    1080      1090      1100      1110      1120      1130         
b15878 TGAAGAGTGCAAGCATCCAAAGGCTGTAACAATCTTAGCAAGAGGTTCAACAGAGCACGT
         :::: ::::: :: ::::: ::::: ::::::::::  :::::  :::::::::: ::
b15789 AAAAGAATGCAAACACCCAAAAGCTGTTACAATCTTAGTTAGAGGAACAACAGAGCATGT
      1070      1080      1090      1100      1110      1120       

    1140      1150      1160      1170      1180      1190         
b15878 TGTTGAAGAAGTTGCAAGAGCAATTGATGATGCAATTGGAGTTGTCAAGTGTGCATTAGA
        ::::: ::::: :::::::: ::::::::::: :::::::::::    ::  :: : ::
b15789 AGTTGATGAAGTAGCAAGAGCTATTGATGATGCTATTGGAGTTGTTTCATGCACAATCGA
      1130      1140      1150      1160      1170      1180       

    1200      1210      1220      1230      1240      1250         
b15878 AGAAGGTAAGATTGTTGCTGGTGGGGGAGCAACTGAGATAGAATTAGCTAAGAGATTAAG
       ::: :: :: :: :: :: ::::: :::::   :::  : :::   :::: :::::::::
b15789 AGATGGAAAAATAGTAGCAGGTGGTGGAGCTGTTGAAGTTGAAACTGCTATGAGATTAAG
      1190      1200      1210      1220      1230      1240       

    1260      1270      1280      1290      1300      1310         
b15878 AAAATTCGCTGAAACAGTTGCTGGAAGAGAGCAGTTAGCAGTTAAGGCATTCGCTGATGC
       : ::::::::::  : ::    ::::::::::: ::::::::::: : ::: ::::: ::
b15789 AGAATTCGCTGACTCCGTAAGCGGAAGAGAGCAATTAGCAGTTAAAGGATTTGCTGACGC
      1250      1260      1270      1280      1290      1300       

    1320      1330      1340      1350      1360      1370         
b15878 TTTAGAAGTAATACCAAGAACATTAGCTGAGAACTCAGGATTAGACCCAATTGACATGCT
       ::: :::::::::::::::::: :::: :: ::  : ::::::::  : ::::: ::: :
b15789 TTTGGAAGTAATACCAAGAACACTAGCAGAAAATGCTGGATTAGATGCTATTGAAATGTT
      1310      1320      1330      1340      1350      1360       

    1380      1390      1400      1410      1420      1430         
b15878 CGTTAAGTTGAGAGCTGCTCACGAGAAAGAAGGCGGAGAAGTCTACGGATTAGACGTCTT
        ::::: :: ::::::   :: :  : ::::::  :   :   :  :::::: : :: ::
b15789 AGTTAATTTAAGAGCTAAACATGCAACAGAAGGAAGCACAACATTTGGATTAAATGTATT
      1370      1380      1390      1400      1410      1420       

    1440      1450      1460      1470      1480      1490         
b15878 CGAAGGAGAAGTAGTTGATATGATGGAGAAAGGGGTTGTTGAACCATTGAAAGTCAAGAC
           :::::::: :  ::::::   :  :: :: :: ::::::::::: : ::: :: ::
b15789 AACCGGAGAAGTTGAAGATATGGCTGCAAATGGAGTAGTTGAACCATTAAGAGTTAAAAC
      1430      1440      1450      1460      1470      1480       

    1500      1510      1520      1530      1540      1550         
b15878 ACAGGCAATTGACTCAGCTACAGAGGCATCAGTCATGCTCTTAAGAATCGATGACGTCAT
       ::: :: ::  : :: :: :::::  :  : :  ::: : :::::::: :: :: :: ::
b15789 ACAAGCTATACAATCTGCAACAGAATCCGCTGAAATGTTATTAAGAATTGACGATGTAAT
      1490      1500      1510      1520      1530      1540       

    1560      1570          1580      1590      1600      1610     
b15878 AGCTGCTGAGAAAGTTA----AAGAAGACAAGGGAGGAGAAGGAGGAGACATGGGAGGAG
        :::::::: ::: :::      : ::: : :   :  ::    :: :  ::::::::: 
b15789 TGCTGCTGA-AAAATTAGGCGGTGGAGATATGCCTGCTGATATGGGCGGAATGGGAGGAA
      1550       1560      1570      1580      1590      1600      

        1620                     
b15878 GTGACGAATTTTAA            
                                 
b15789 TGGGCGGTATGCCAGGAATGATGTAA
       1610      1620      1630  

</pre>
<hr>
<p><pre>


1629 residues in 1 query   sequences
4161612 residues in 2552 library sequences
 Scomplib [35.03]
 start: Mon Apr 22 02:31:46 2024 done: Mon Apr 22 02:31:47 2024
 Total Scan time:  0.560 Total Display time:  0.020

Function used was FASTA [version 35.03 Feb. 18, 2008]
</pre>