/data/www/cpndb/fasta_results/b17958.fasta# /data/www/cpndb/fasta35 -E 200 -Q -m 6 -b 20 -d 20 -z 2 -H /data/www/cpndb/fasta_results/b17958 /data/www/cpndb/blastDBs/reference_a_nut
<pre>
FASTA searches a protein or DNA sequence data bank
 version 35.03 Feb. 18, 2008
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

</pre>
Query: /data/www/cpndb/fasta_results/b17958
<pre>
  1>>>b17958 555 nt - 555 nt
Library: /data/www/cpndb/blastDBs/reference_a_nut 10433008 residues in 18820 sequences

10433008 residues in 18820 sequences
Statistics: MLE_cen statistics: Lambda= 0.0029;  K=1.541e-05 (cen=941)
Algorithm: FASTA (3.5 Sept 2006) [optimized]
Parameters: +5/-4 matrix (5:-4) ktup: 6
 join: 51, opt: 36, open/ext: -12/-4, width:  16
 Scan time:  1.470
</pre>
<p>
<hr>
<p>
<p><pre>

The best scores are:                                      opt bits E(18820)
<a onClick="window.open('getRecord.php?id=b22820',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22820" target=_"blank">b22820</a> HE601808 Chlamydia trachomatis Ia/Soton ( 555) [f] 2775 27.8      26 <A HREF="#b22820">align</A>
<a onClick="window.open('getRecord.php?id=b22814',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22814" target=_"blank">b22814</a> HE601803 Chlamydia trachomatis E/SotonE ( 555) [f] 2775 27.8      26 <A HREF="#b22814">align</A>
<a onClick="window.open('getRecord.php?id=b23922',
                                'cpndb_record'); return false;" href="getRecord.php?id=b23922" target=_"blank">b23922</a> HF562298 Chlamydia trachomatis IU824    ( 555) [f] 2775 27.8      26 <A HREF="#b23922">align</A>
<a onClick="window.open('getRecord.php?id=b23919',
                                'cpndb_record'); return false;" href="getRecord.php?id=b23919" target=_"blank">b23919</a> HF562300 Chlamydia trachomatis IU888    ( 555) [f] 2775 27.8      26 <A HREF="#b23919">align</A>
<a onClick="window.open('getRecord.php?id=b20874',
                                'cpndb_record'); return false;" href="getRecord.php?id=b20874" target=_"blank">b20874</a> HE601804 Chlamydia trachomatis F/SW4    ( 555) [f] 2775 27.8      26 <A HREF="#b20874">align</A>
<a onClick="window.open('getRecord.php?id=b22826',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22826" target=_"blank">b22826</a> HE601870 Chlamydia trachomatis E/Bour   ( 555) [f] 2775 27.8      26 <A HREF="#b22826">align</A>
<a onClick="window.open('getRecord.php?id=b22823',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22823" target=_"blank">b22823</a> HE601809 Chlamydia trachomatis Ia/Soton ( 555) [f] 2775 27.8      26 <A HREF="#b22823">align</A>
<a onClick="window.open('getRecord.php?id=b22793',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22793" target=_"blank">b22793</a> HE601806 Chlamydia trachomatis F/SotonF ( 555) [f] 2775 27.8      26 <A HREF="#b22793">align</A>
<a onClick="window.open('getRecord.php?id=b22811',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22811" target=_"blank">b22811</a> HE601802 Chlamydia trachomatis E/SotonE ( 555) [f] 2775 27.8      26 <A HREF="#b22811">align</A>
<a onClick="window.open('getRecord.php?id=b22796',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22796" target=_"blank">b22796</a> HE601798 Chlamydia trachomatis D/SotonD ( 555) [f] 2775 27.8      26 <A HREF="#b22796">align</A>
<a onClick="window.open('getRecord.php?id=b20877',
                                'cpndb_record'); return false;" href="getRecord.php?id=b20877" target=_"blank">b20877</a> HE601805 Chlamydia trachomatis F/SW5    ( 555) [f] 2775 27.8      26 <A HREF="#b20877">align</A>
<a onClick="window.open('getRecord.php?id=b5020',
                                'cpndb_record'); return false;" href="getRecord.php?id=b5020" target=_"blank">b5020</a> AY447001 Chlamydia trachomatis E/UW-5/CX ( 555) [f] 2775 27.8      26 <A HREF="#b5020">align</A>
<a onClick="window.open('getRecord.php?id=b20871',
                                'cpndb_record'); return false;" href="getRecord.php?id=b20871" target=_"blank">b20871</a> HE601801 Chlamydia trachomatis E/SW3    ( 555) [f] 2766 27.7      26 <A HREF="#b20871">align</A>
<a onClick="window.open('getRecord.php?id=b17412',
                                'cpndb_record'); return false;" href="getRecord.php?id=b17412" target=_"blank">b17412</a> CP002052 Chlamydia trachomatis D-EC     ( 555) [f] 2766 27.7      26 <A HREF="#b17412">align</A>
<a onClick="window.open('getRecord.php?id=b5854',
                                'cpndb_record'); return false;" href="getRecord.php?id=b5854" target=_"blank">b5854</a> AJ783840 Chlamydia trachomatis serovar D ( 555) [f] 2766 27.7      26 <A HREF="#b5854">align</A>
<a onClick="window.open('getRecord.php?id=b1318',
                                'cpndb_record'); return false;" href="getRecord.php?id=b1318" target=_"blank">b1318</a> NC_000117 Chlamydia trachomatis D/UW-3/C ( 555) [f] 2766 27.7      26 <A HREF="#b1318">align</A>
<a onClick="window.open('getRecord.php?id=b22799',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22799" target=_"blank">b22799</a> HE601794 Chlamydia trachomatis K/SotonK ( 555) [f] 2766 27.7      26 <A HREF="#b22799">align</A>
<a onClick="window.open('getRecord.php?id=b22805',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22805" target=_"blank">b22805</a> HE601799 Chlamydia trachomatis D/SotonD ( 555) [f] 2766 27.7      26 <A HREF="#b22805">align</A>
<a onClick="window.open('getRecord.php?id=b22808',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22808" target=_"blank">b22808</a> HE601800 Chlamydia trachomatis D/SotonD ( 555) [f] 2766 27.7      26 <A HREF="#b22808">align</A>
<a onClick="window.open('getRecord.php?id=b22817',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22817" target=_"blank">b22817</a> HE601807 Chlamydia trachomatis G/SotonG ( 555) [f] 2766 27.7      26 <A HREF="#b22817">align</A>
</pre><p><hr><p>

>>>b17958, 555 nt vs /data/www/cpndb/blastDBs/reference_a_nut library

<A name=b22820>
<pre>
>><a onClick="window.open('getRecord.php?id=b22820',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22820" target=_"blank">b22820</a> HE601808 Chlamydia trachomatis Ia/SotonIa1       (555 nt)
 initn: 2775 init1: 2775 opt: 2775  Z-score: 96.9  bits: 27.8 E():   26
banded Smith-Waterman score: 2775; 100.0% identity (100.0% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b17958 GCTACTGTTCTTGCTGAAGCTATCTATACAGAAGGATTACGCAATGTAACAGCTGGAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22820 GCTACTGTTCTTGCTGAAGCTATCTATACAGAAGGATTACGCAATGTAACAGCTGGAGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b17958 AATCCAATGGACCTCAAACGAGGTATTGATAAAGCTGTTAAGGTTGTTGTTGATCAAATC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22820 AATCCAATGGACCTCAAACGAGGTATTGATAAAGCTGTTAAGGTTGTTGTTGATCAAATC
               70        80        90       100       110       120

              130       140       150       160       170       180
b17958 AGAAAAATCAGCAAACCTGTTCAGCATCATAAAGAAATTGCTCAAGTTGCAACAATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22820 AGAAAAATCAGCAAACCTGTTCAGCATCATAAAGAAATTGCTCAAGTTGCAACAATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b17958 GCTAATAATGATGCAGAAATCGGGAATCTGATTGCTGAAGCAATGGAGAAAGTTGGTAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22820 GCTAATAATGATGCAGAAATCGGGAATCTGATTGCTGAAGCAATGGAGAAAGTTGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b17958 AACGGCTCTATCACTGTTGAAGAAGCAAAAGGATTTGAAACCGTTTTGGATGTTGTTGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22820 AACGGCTCTATCACTGTTGAAGAAGCAAAAGGATTTGAAACCGTTTTGGATGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b17958 GGAATGAATTTCAATAGAGGTTACCTCTCTAGCTACTTCGCAACAAATCCAGAAACTCAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22820 GGAATGAATTTCAATAGAGGTTACCTCTCTAGCTACTTCGCAACAAATCCAGAAACTCAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b17958 GAATGTGTATTAGAAGACGCTTTGGTTCTAATCTACGATAAGAAAATTTCTGGGATCAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22820 GAATGTGTATTAGAAGACGCTTTGGTTCTAATCTACGATAAGAAAATTTCTGGGATCAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b17958 GATTTCCTTCCTGTTTTACAACAAGTTGCTGAATCCGGCCGTCCTCTTCTTATTATAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22820 GATTTCCTTCCTGTTTTACAACAAGTTGCTGAATCCGGCCGTCCTCTTCTTATTATAGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b17958 GAAGACATTGAAGGCGAAGCTTTAGCTACTTTGGTCGTGAACAGAATTCGTGGAGGATTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22820 GAAGACATTGAAGGCGAAGCTTTAGCTACTTTGGTCGTGAACAGAATTCGTGGAGGATTC
              490       500       510       520       530       540

              550     
b17958 CGGGTTTGCGCAGTT
       :::::::::::::::
b22820 CGGGTTTGCGCAGTT
              550     

</pre>
<hr>
<A name=b22814>
<pre>
>><a onClick="window.open('getRecord.php?id=b22814',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22814" target=_"blank">b22814</a> HE601803 Chlamydia trachomatis E/SotonE8         (555 nt)
 initn: 2775 init1: 2775 opt: 2775  Z-score: 96.9  bits: 27.8 E():   26
banded Smith-Waterman score: 2775; 100.0% identity (100.0% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b17958 GCTACTGTTCTTGCTGAAGCTATCTATACAGAAGGATTACGCAATGTAACAGCTGGAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22814 GCTACTGTTCTTGCTGAAGCTATCTATACAGAAGGATTACGCAATGTAACAGCTGGAGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b17958 AATCCAATGGACCTCAAACGAGGTATTGATAAAGCTGTTAAGGTTGTTGTTGATCAAATC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22814 AATCCAATGGACCTCAAACGAGGTATTGATAAAGCTGTTAAGGTTGTTGTTGATCAAATC
               70        80        90       100       110       120

              130       140       150       160       170       180
b17958 AGAAAAATCAGCAAACCTGTTCAGCATCATAAAGAAATTGCTCAAGTTGCAACAATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22814 AGAAAAATCAGCAAACCTGTTCAGCATCATAAAGAAATTGCTCAAGTTGCAACAATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b17958 GCTAATAATGATGCAGAAATCGGGAATCTGATTGCTGAAGCAATGGAGAAAGTTGGTAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22814 GCTAATAATGATGCAGAAATCGGGAATCTGATTGCTGAAGCAATGGAGAAAGTTGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b17958 AACGGCTCTATCACTGTTGAAGAAGCAAAAGGATTTGAAACCGTTTTGGATGTTGTTGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22814 AACGGCTCTATCACTGTTGAAGAAGCAAAAGGATTTGAAACCGTTTTGGATGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b17958 GGAATGAATTTCAATAGAGGTTACCTCTCTAGCTACTTCGCAACAAATCCAGAAACTCAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22814 GGAATGAATTTCAATAGAGGTTACCTCTCTAGCTACTTCGCAACAAATCCAGAAACTCAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b17958 GAATGTGTATTAGAAGACGCTTTGGTTCTAATCTACGATAAGAAAATTTCTGGGATCAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22814 GAATGTGTATTAGAAGACGCTTTGGTTCTAATCTACGATAAGAAAATTTCTGGGATCAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b17958 GATTTCCTTCCTGTTTTACAACAAGTTGCTGAATCCGGCCGTCCTCTTCTTATTATAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22814 GATTTCCTTCCTGTTTTACAACAAGTTGCTGAATCCGGCCGTCCTCTTCTTATTATAGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b17958 GAAGACATTGAAGGCGAAGCTTTAGCTACTTTGGTCGTGAACAGAATTCGTGGAGGATTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22814 GAAGACATTGAAGGCGAAGCTTTAGCTACTTTGGTCGTGAACAGAATTCGTGGAGGATTC
              490       500       510       520       530       540

              550     
b17958 CGGGTTTGCGCAGTT
       :::::::::::::::
b22814 CGGGTTTGCGCAGTT
              550     

</pre>
<hr>
<A name=b23922>
<pre>
>><a onClick="window.open('getRecord.php?id=b23922',
                                'cpndb_record'); return false;" href="getRecord.php?id=b23922" target=_"blank">b23922</a> HF562298 Chlamydia trachomatis IU824             (555 nt)
 initn: 2775 init1: 2775 opt: 2775  Z-score: 96.9  bits: 27.8 E():   26
banded Smith-Waterman score: 2775; 100.0% identity (100.0% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b17958 GCTACTGTTCTTGCTGAAGCTATCTATACAGAAGGATTACGCAATGTAACAGCTGGAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b23922 GCTACTGTTCTTGCTGAAGCTATCTATACAGAAGGATTACGCAATGTAACAGCTGGAGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b17958 AATCCAATGGACCTCAAACGAGGTATTGATAAAGCTGTTAAGGTTGTTGTTGATCAAATC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b23922 AATCCAATGGACCTCAAACGAGGTATTGATAAAGCTGTTAAGGTTGTTGTTGATCAAATC
               70        80        90       100       110       120

              130       140       150       160       170       180
b17958 AGAAAAATCAGCAAACCTGTTCAGCATCATAAAGAAATTGCTCAAGTTGCAACAATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b23922 AGAAAAATCAGCAAACCTGTTCAGCATCATAAAGAAATTGCTCAAGTTGCAACAATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b17958 GCTAATAATGATGCAGAAATCGGGAATCTGATTGCTGAAGCAATGGAGAAAGTTGGTAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b23922 GCTAATAATGATGCAGAAATCGGGAATCTGATTGCTGAAGCAATGGAGAAAGTTGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b17958 AACGGCTCTATCACTGTTGAAGAAGCAAAAGGATTTGAAACCGTTTTGGATGTTGTTGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b23922 AACGGCTCTATCACTGTTGAAGAAGCAAAAGGATTTGAAACCGTTTTGGATGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b17958 GGAATGAATTTCAATAGAGGTTACCTCTCTAGCTACTTCGCAACAAATCCAGAAACTCAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b23922 GGAATGAATTTCAATAGAGGTTACCTCTCTAGCTACTTCGCAACAAATCCAGAAACTCAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b17958 GAATGTGTATTAGAAGACGCTTTGGTTCTAATCTACGATAAGAAAATTTCTGGGATCAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b23922 GAATGTGTATTAGAAGACGCTTTGGTTCTAATCTACGATAAGAAAATTTCTGGGATCAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b17958 GATTTCCTTCCTGTTTTACAACAAGTTGCTGAATCCGGCCGTCCTCTTCTTATTATAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b23922 GATTTCCTTCCTGTTTTACAACAAGTTGCTGAATCCGGCCGTCCTCTTCTTATTATAGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b17958 GAAGACATTGAAGGCGAAGCTTTAGCTACTTTGGTCGTGAACAGAATTCGTGGAGGATTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b23922 GAAGACATTGAAGGCGAAGCTTTAGCTACTTTGGTCGTGAACAGAATTCGTGGAGGATTC
              490       500       510       520       530       540

              550     
b17958 CGGGTTTGCGCAGTT
       :::::::::::::::
b23922 CGGGTTTGCGCAGTT
              550     

</pre>
<hr>
<A name=b23919>
<pre>
>><a onClick="window.open('getRecord.php?id=b23919',
                                'cpndb_record'); return false;" href="getRecord.php?id=b23919" target=_"blank">b23919</a> HF562300 Chlamydia trachomatis IU888             (555 nt)
 initn: 2775 init1: 2775 opt: 2775  Z-score: 96.9  bits: 27.8 E():   26
banded Smith-Waterman score: 2775; 100.0% identity (100.0% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b17958 GCTACTGTTCTTGCTGAAGCTATCTATACAGAAGGATTACGCAATGTAACAGCTGGAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b23919 GCTACTGTTCTTGCTGAAGCTATCTATACAGAAGGATTACGCAATGTAACAGCTGGAGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b17958 AATCCAATGGACCTCAAACGAGGTATTGATAAAGCTGTTAAGGTTGTTGTTGATCAAATC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b23919 AATCCAATGGACCTCAAACGAGGTATTGATAAAGCTGTTAAGGTTGTTGTTGATCAAATC
               70        80        90       100       110       120

              130       140       150       160       170       180
b17958 AGAAAAATCAGCAAACCTGTTCAGCATCATAAAGAAATTGCTCAAGTTGCAACAATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b23919 AGAAAAATCAGCAAACCTGTTCAGCATCATAAAGAAATTGCTCAAGTTGCAACAATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b17958 GCTAATAATGATGCAGAAATCGGGAATCTGATTGCTGAAGCAATGGAGAAAGTTGGTAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b23919 GCTAATAATGATGCAGAAATCGGGAATCTGATTGCTGAAGCAATGGAGAAAGTTGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b17958 AACGGCTCTATCACTGTTGAAGAAGCAAAAGGATTTGAAACCGTTTTGGATGTTGTTGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b23919 AACGGCTCTATCACTGTTGAAGAAGCAAAAGGATTTGAAACCGTTTTGGATGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b17958 GGAATGAATTTCAATAGAGGTTACCTCTCTAGCTACTTCGCAACAAATCCAGAAACTCAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b23919 GGAATGAATTTCAATAGAGGTTACCTCTCTAGCTACTTCGCAACAAATCCAGAAACTCAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b17958 GAATGTGTATTAGAAGACGCTTTGGTTCTAATCTACGATAAGAAAATTTCTGGGATCAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b23919 GAATGTGTATTAGAAGACGCTTTGGTTCTAATCTACGATAAGAAAATTTCTGGGATCAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b17958 GATTTCCTTCCTGTTTTACAACAAGTTGCTGAATCCGGCCGTCCTCTTCTTATTATAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b23919 GATTTCCTTCCTGTTTTACAACAAGTTGCTGAATCCGGCCGTCCTCTTCTTATTATAGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b17958 GAAGACATTGAAGGCGAAGCTTTAGCTACTTTGGTCGTGAACAGAATTCGTGGAGGATTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b23919 GAAGACATTGAAGGCGAAGCTTTAGCTACTTTGGTCGTGAACAGAATTCGTGGAGGATTC
              490       500       510       520       530       540

              550     
b17958 CGGGTTTGCGCAGTT
       :::::::::::::::
b23919 CGGGTTTGCGCAGTT
              550     

</pre>
<hr>
<A name=b20874>
<pre>
>><a onClick="window.open('getRecord.php?id=b20874',
                                'cpndb_record'); return false;" href="getRecord.php?id=b20874" target=_"blank">b20874</a> HE601804 Chlamydia trachomatis F/SW4             (555 nt)
 initn: 2775 init1: 2775 opt: 2775  Z-score: 96.9  bits: 27.8 E():   26
banded Smith-Waterman score: 2775; 100.0% identity (100.0% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b17958 GCTACTGTTCTTGCTGAAGCTATCTATACAGAAGGATTACGCAATGTAACAGCTGGAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20874 GCTACTGTTCTTGCTGAAGCTATCTATACAGAAGGATTACGCAATGTAACAGCTGGAGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b17958 AATCCAATGGACCTCAAACGAGGTATTGATAAAGCTGTTAAGGTTGTTGTTGATCAAATC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20874 AATCCAATGGACCTCAAACGAGGTATTGATAAAGCTGTTAAGGTTGTTGTTGATCAAATC
               70        80        90       100       110       120

              130       140       150       160       170       180
b17958 AGAAAAATCAGCAAACCTGTTCAGCATCATAAAGAAATTGCTCAAGTTGCAACAATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20874 AGAAAAATCAGCAAACCTGTTCAGCATCATAAAGAAATTGCTCAAGTTGCAACAATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b17958 GCTAATAATGATGCAGAAATCGGGAATCTGATTGCTGAAGCAATGGAGAAAGTTGGTAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20874 GCTAATAATGATGCAGAAATCGGGAATCTGATTGCTGAAGCAATGGAGAAAGTTGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b17958 AACGGCTCTATCACTGTTGAAGAAGCAAAAGGATTTGAAACCGTTTTGGATGTTGTTGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20874 AACGGCTCTATCACTGTTGAAGAAGCAAAAGGATTTGAAACCGTTTTGGATGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b17958 GGAATGAATTTCAATAGAGGTTACCTCTCTAGCTACTTCGCAACAAATCCAGAAACTCAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20874 GGAATGAATTTCAATAGAGGTTACCTCTCTAGCTACTTCGCAACAAATCCAGAAACTCAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b17958 GAATGTGTATTAGAAGACGCTTTGGTTCTAATCTACGATAAGAAAATTTCTGGGATCAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20874 GAATGTGTATTAGAAGACGCTTTGGTTCTAATCTACGATAAGAAAATTTCTGGGATCAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b17958 GATTTCCTTCCTGTTTTACAACAAGTTGCTGAATCCGGCCGTCCTCTTCTTATTATAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20874 GATTTCCTTCCTGTTTTACAACAAGTTGCTGAATCCGGCCGTCCTCTTCTTATTATAGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b17958 GAAGACATTGAAGGCGAAGCTTTAGCTACTTTGGTCGTGAACAGAATTCGTGGAGGATTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20874 GAAGACATTGAAGGCGAAGCTTTAGCTACTTTGGTCGTGAACAGAATTCGTGGAGGATTC
              490       500       510       520       530       540

              550     
b17958 CGGGTTTGCGCAGTT
       :::::::::::::::
b20874 CGGGTTTGCGCAGTT
              550     

</pre>
<hr>
<A name=b22826>
<pre>
>><a onClick="window.open('getRecord.php?id=b22826',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22826" target=_"blank">b22826</a> HE601870 Chlamydia trachomatis E/Bour            (555 nt)
 initn: 2775 init1: 2775 opt: 2775  Z-score: 96.9  bits: 27.8 E():   26
banded Smith-Waterman score: 2775; 100.0% identity (100.0% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b17958 GCTACTGTTCTTGCTGAAGCTATCTATACAGAAGGATTACGCAATGTAACAGCTGGAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22826 GCTACTGTTCTTGCTGAAGCTATCTATACAGAAGGATTACGCAATGTAACAGCTGGAGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b17958 AATCCAATGGACCTCAAACGAGGTATTGATAAAGCTGTTAAGGTTGTTGTTGATCAAATC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22826 AATCCAATGGACCTCAAACGAGGTATTGATAAAGCTGTTAAGGTTGTTGTTGATCAAATC
               70        80        90       100       110       120

              130       140       150       160       170       180
b17958 AGAAAAATCAGCAAACCTGTTCAGCATCATAAAGAAATTGCTCAAGTTGCAACAATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22826 AGAAAAATCAGCAAACCTGTTCAGCATCATAAAGAAATTGCTCAAGTTGCAACAATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b17958 GCTAATAATGATGCAGAAATCGGGAATCTGATTGCTGAAGCAATGGAGAAAGTTGGTAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22826 GCTAATAATGATGCAGAAATCGGGAATCTGATTGCTGAAGCAATGGAGAAAGTTGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b17958 AACGGCTCTATCACTGTTGAAGAAGCAAAAGGATTTGAAACCGTTTTGGATGTTGTTGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22826 AACGGCTCTATCACTGTTGAAGAAGCAAAAGGATTTGAAACCGTTTTGGATGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b17958 GGAATGAATTTCAATAGAGGTTACCTCTCTAGCTACTTCGCAACAAATCCAGAAACTCAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22826 GGAATGAATTTCAATAGAGGTTACCTCTCTAGCTACTTCGCAACAAATCCAGAAACTCAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b17958 GAATGTGTATTAGAAGACGCTTTGGTTCTAATCTACGATAAGAAAATTTCTGGGATCAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22826 GAATGTGTATTAGAAGACGCTTTGGTTCTAATCTACGATAAGAAAATTTCTGGGATCAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b17958 GATTTCCTTCCTGTTTTACAACAAGTTGCTGAATCCGGCCGTCCTCTTCTTATTATAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22826 GATTTCCTTCCTGTTTTACAACAAGTTGCTGAATCCGGCCGTCCTCTTCTTATTATAGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b17958 GAAGACATTGAAGGCGAAGCTTTAGCTACTTTGGTCGTGAACAGAATTCGTGGAGGATTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22826 GAAGACATTGAAGGCGAAGCTTTAGCTACTTTGGTCGTGAACAGAATTCGTGGAGGATTC
              490       500       510       520       530       540

              550     
b17958 CGGGTTTGCGCAGTT
       :::::::::::::::
b22826 CGGGTTTGCGCAGTT
              550     

</pre>
<hr>
<A name=b22823>
<pre>
>><a onClick="window.open('getRecord.php?id=b22823',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22823" target=_"blank">b22823</a> HE601809 Chlamydia trachomatis Ia/SotonIa3       (555 nt)
 initn: 2775 init1: 2775 opt: 2775  Z-score: 96.9  bits: 27.8 E():   26
banded Smith-Waterman score: 2775; 100.0% identity (100.0% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b17958 GCTACTGTTCTTGCTGAAGCTATCTATACAGAAGGATTACGCAATGTAACAGCTGGAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22823 GCTACTGTTCTTGCTGAAGCTATCTATACAGAAGGATTACGCAATGTAACAGCTGGAGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b17958 AATCCAATGGACCTCAAACGAGGTATTGATAAAGCTGTTAAGGTTGTTGTTGATCAAATC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22823 AATCCAATGGACCTCAAACGAGGTATTGATAAAGCTGTTAAGGTTGTTGTTGATCAAATC
               70        80        90       100       110       120

              130       140       150       160       170       180
b17958 AGAAAAATCAGCAAACCTGTTCAGCATCATAAAGAAATTGCTCAAGTTGCAACAATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22823 AGAAAAATCAGCAAACCTGTTCAGCATCATAAAGAAATTGCTCAAGTTGCAACAATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b17958 GCTAATAATGATGCAGAAATCGGGAATCTGATTGCTGAAGCAATGGAGAAAGTTGGTAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22823 GCTAATAATGATGCAGAAATCGGGAATCTGATTGCTGAAGCAATGGAGAAAGTTGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b17958 AACGGCTCTATCACTGTTGAAGAAGCAAAAGGATTTGAAACCGTTTTGGATGTTGTTGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22823 AACGGCTCTATCACTGTTGAAGAAGCAAAAGGATTTGAAACCGTTTTGGATGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b17958 GGAATGAATTTCAATAGAGGTTACCTCTCTAGCTACTTCGCAACAAATCCAGAAACTCAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22823 GGAATGAATTTCAATAGAGGTTACCTCTCTAGCTACTTCGCAACAAATCCAGAAACTCAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b17958 GAATGTGTATTAGAAGACGCTTTGGTTCTAATCTACGATAAGAAAATTTCTGGGATCAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22823 GAATGTGTATTAGAAGACGCTTTGGTTCTAATCTACGATAAGAAAATTTCTGGGATCAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b17958 GATTTCCTTCCTGTTTTACAACAAGTTGCTGAATCCGGCCGTCCTCTTCTTATTATAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22823 GATTTCCTTCCTGTTTTACAACAAGTTGCTGAATCCGGCCGTCCTCTTCTTATTATAGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b17958 GAAGACATTGAAGGCGAAGCTTTAGCTACTTTGGTCGTGAACAGAATTCGTGGAGGATTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22823 GAAGACATTGAAGGCGAAGCTTTAGCTACTTTGGTCGTGAACAGAATTCGTGGAGGATTC
              490       500       510       520       530       540

              550     
b17958 CGGGTTTGCGCAGTT
       :::::::::::::::
b22823 CGGGTTTGCGCAGTT
              550     

</pre>
<hr>
<A name=b22793>
<pre>
>><a onClick="window.open('getRecord.php?id=b22793',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22793" target=_"blank">b22793</a> HE601806 Chlamydia trachomatis F/SotonF3         (555 nt)
 initn: 2775 init1: 2775 opt: 2775  Z-score: 96.9  bits: 27.8 E():   26
banded Smith-Waterman score: 2775; 100.0% identity (100.0% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b17958 GCTACTGTTCTTGCTGAAGCTATCTATACAGAAGGATTACGCAATGTAACAGCTGGAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22793 GCTACTGTTCTTGCTGAAGCTATCTATACAGAAGGATTACGCAATGTAACAGCTGGAGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b17958 AATCCAATGGACCTCAAACGAGGTATTGATAAAGCTGTTAAGGTTGTTGTTGATCAAATC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22793 AATCCAATGGACCTCAAACGAGGTATTGATAAAGCTGTTAAGGTTGTTGTTGATCAAATC
               70        80        90       100       110       120

              130       140       150       160       170       180
b17958 AGAAAAATCAGCAAACCTGTTCAGCATCATAAAGAAATTGCTCAAGTTGCAACAATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22793 AGAAAAATCAGCAAACCTGTTCAGCATCATAAAGAAATTGCTCAAGTTGCAACAATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b17958 GCTAATAATGATGCAGAAATCGGGAATCTGATTGCTGAAGCAATGGAGAAAGTTGGTAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22793 GCTAATAATGATGCAGAAATCGGGAATCTGATTGCTGAAGCAATGGAGAAAGTTGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b17958 AACGGCTCTATCACTGTTGAAGAAGCAAAAGGATTTGAAACCGTTTTGGATGTTGTTGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22793 AACGGCTCTATCACTGTTGAAGAAGCAAAAGGATTTGAAACCGTTTTGGATGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b17958 GGAATGAATTTCAATAGAGGTTACCTCTCTAGCTACTTCGCAACAAATCCAGAAACTCAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22793 GGAATGAATTTCAATAGAGGTTACCTCTCTAGCTACTTCGCAACAAATCCAGAAACTCAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b17958 GAATGTGTATTAGAAGACGCTTTGGTTCTAATCTACGATAAGAAAATTTCTGGGATCAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22793 GAATGTGTATTAGAAGACGCTTTGGTTCTAATCTACGATAAGAAAATTTCTGGGATCAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b17958 GATTTCCTTCCTGTTTTACAACAAGTTGCTGAATCCGGCCGTCCTCTTCTTATTATAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22793 GATTTCCTTCCTGTTTTACAACAAGTTGCTGAATCCGGCCGTCCTCTTCTTATTATAGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b17958 GAAGACATTGAAGGCGAAGCTTTAGCTACTTTGGTCGTGAACAGAATTCGTGGAGGATTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22793 GAAGACATTGAAGGCGAAGCTTTAGCTACTTTGGTCGTGAACAGAATTCGTGGAGGATTC
              490       500       510       520       530       540

              550     
b17958 CGGGTTTGCGCAGTT
       :::::::::::::::
b22793 CGGGTTTGCGCAGTT
              550     

</pre>
<hr>
<A name=b22811>
<pre>
>><a onClick="window.open('getRecord.php?id=b22811',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22811" target=_"blank">b22811</a> HE601802 Chlamydia trachomatis E/SotonE4         (555 nt)
 initn: 2775 init1: 2775 opt: 2775  Z-score: 96.9  bits: 27.8 E():   26
banded Smith-Waterman score: 2775; 100.0% identity (100.0% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b17958 GCTACTGTTCTTGCTGAAGCTATCTATACAGAAGGATTACGCAATGTAACAGCTGGAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22811 GCTACTGTTCTTGCTGAAGCTATCTATACAGAAGGATTACGCAATGTAACAGCTGGAGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b17958 AATCCAATGGACCTCAAACGAGGTATTGATAAAGCTGTTAAGGTTGTTGTTGATCAAATC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22811 AATCCAATGGACCTCAAACGAGGTATTGATAAAGCTGTTAAGGTTGTTGTTGATCAAATC
               70        80        90       100       110       120

              130       140       150       160       170       180
b17958 AGAAAAATCAGCAAACCTGTTCAGCATCATAAAGAAATTGCTCAAGTTGCAACAATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22811 AGAAAAATCAGCAAACCTGTTCAGCATCATAAAGAAATTGCTCAAGTTGCAACAATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b17958 GCTAATAATGATGCAGAAATCGGGAATCTGATTGCTGAAGCAATGGAGAAAGTTGGTAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22811 GCTAATAATGATGCAGAAATCGGGAATCTGATTGCTGAAGCAATGGAGAAAGTTGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b17958 AACGGCTCTATCACTGTTGAAGAAGCAAAAGGATTTGAAACCGTTTTGGATGTTGTTGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22811 AACGGCTCTATCACTGTTGAAGAAGCAAAAGGATTTGAAACCGTTTTGGATGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b17958 GGAATGAATTTCAATAGAGGTTACCTCTCTAGCTACTTCGCAACAAATCCAGAAACTCAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22811 GGAATGAATTTCAATAGAGGTTACCTCTCTAGCTACTTCGCAACAAATCCAGAAACTCAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b17958 GAATGTGTATTAGAAGACGCTTTGGTTCTAATCTACGATAAGAAAATTTCTGGGATCAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22811 GAATGTGTATTAGAAGACGCTTTGGTTCTAATCTACGATAAGAAAATTTCTGGGATCAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b17958 GATTTCCTTCCTGTTTTACAACAAGTTGCTGAATCCGGCCGTCCTCTTCTTATTATAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22811 GATTTCCTTCCTGTTTTACAACAAGTTGCTGAATCCGGCCGTCCTCTTCTTATTATAGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b17958 GAAGACATTGAAGGCGAAGCTTTAGCTACTTTGGTCGTGAACAGAATTCGTGGAGGATTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22811 GAAGACATTGAAGGCGAAGCTTTAGCTACTTTGGTCGTGAACAGAATTCGTGGAGGATTC
              490       500       510       520       530       540

              550     
b17958 CGGGTTTGCGCAGTT
       :::::::::::::::
b22811 CGGGTTTGCGCAGTT
              550     

</pre>
<hr>
<A name=b22796>
<pre>
>><a onClick="window.open('getRecord.php?id=b22796',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22796" target=_"blank">b22796</a> HE601798 Chlamydia trachomatis D/SotonD1         (555 nt)
 initn: 2775 init1: 2775 opt: 2775  Z-score: 96.9  bits: 27.8 E():   26
banded Smith-Waterman score: 2775; 100.0% identity (100.0% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b17958 GCTACTGTTCTTGCTGAAGCTATCTATACAGAAGGATTACGCAATGTAACAGCTGGAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22796 GCTACTGTTCTTGCTGAAGCTATCTATACAGAAGGATTACGCAATGTAACAGCTGGAGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b17958 AATCCAATGGACCTCAAACGAGGTATTGATAAAGCTGTTAAGGTTGTTGTTGATCAAATC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22796 AATCCAATGGACCTCAAACGAGGTATTGATAAAGCTGTTAAGGTTGTTGTTGATCAAATC
               70        80        90       100       110       120

              130       140       150       160       170       180
b17958 AGAAAAATCAGCAAACCTGTTCAGCATCATAAAGAAATTGCTCAAGTTGCAACAATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22796 AGAAAAATCAGCAAACCTGTTCAGCATCATAAAGAAATTGCTCAAGTTGCAACAATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b17958 GCTAATAATGATGCAGAAATCGGGAATCTGATTGCTGAAGCAATGGAGAAAGTTGGTAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22796 GCTAATAATGATGCAGAAATCGGGAATCTGATTGCTGAAGCAATGGAGAAAGTTGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b17958 AACGGCTCTATCACTGTTGAAGAAGCAAAAGGATTTGAAACCGTTTTGGATGTTGTTGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22796 AACGGCTCTATCACTGTTGAAGAAGCAAAAGGATTTGAAACCGTTTTGGATGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b17958 GGAATGAATTTCAATAGAGGTTACCTCTCTAGCTACTTCGCAACAAATCCAGAAACTCAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22796 GGAATGAATTTCAATAGAGGTTACCTCTCTAGCTACTTCGCAACAAATCCAGAAACTCAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b17958 GAATGTGTATTAGAAGACGCTTTGGTTCTAATCTACGATAAGAAAATTTCTGGGATCAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22796 GAATGTGTATTAGAAGACGCTTTGGTTCTAATCTACGATAAGAAAATTTCTGGGATCAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b17958 GATTTCCTTCCTGTTTTACAACAAGTTGCTGAATCCGGCCGTCCTCTTCTTATTATAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22796 GATTTCCTTCCTGTTTTACAACAAGTTGCTGAATCCGGCCGTCCTCTTCTTATTATAGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b17958 GAAGACATTGAAGGCGAAGCTTTAGCTACTTTGGTCGTGAACAGAATTCGTGGAGGATTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22796 GAAGACATTGAAGGCGAAGCTTTAGCTACTTTGGTCGTGAACAGAATTCGTGGAGGATTC
              490       500       510       520       530       540

              550     
b17958 CGGGTTTGCGCAGTT
       :::::::::::::::
b22796 CGGGTTTGCGCAGTT
              550     

</pre>
<hr>
<A name=b20877>
<pre>
>><a onClick="window.open('getRecord.php?id=b20877',
                                'cpndb_record'); return false;" href="getRecord.php?id=b20877" target=_"blank">b20877</a> HE601805 Chlamydia trachomatis F/SW5             (555 nt)
 initn: 2775 init1: 2775 opt: 2775  Z-score: 96.9  bits: 27.8 E():   26
banded Smith-Waterman score: 2775; 100.0% identity (100.0% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b17958 GCTACTGTTCTTGCTGAAGCTATCTATACAGAAGGATTACGCAATGTAACAGCTGGAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20877 GCTACTGTTCTTGCTGAAGCTATCTATACAGAAGGATTACGCAATGTAACAGCTGGAGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b17958 AATCCAATGGACCTCAAACGAGGTATTGATAAAGCTGTTAAGGTTGTTGTTGATCAAATC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20877 AATCCAATGGACCTCAAACGAGGTATTGATAAAGCTGTTAAGGTTGTTGTTGATCAAATC
               70        80        90       100       110       120

              130       140       150       160       170       180
b17958 AGAAAAATCAGCAAACCTGTTCAGCATCATAAAGAAATTGCTCAAGTTGCAACAATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20877 AGAAAAATCAGCAAACCTGTTCAGCATCATAAAGAAATTGCTCAAGTTGCAACAATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b17958 GCTAATAATGATGCAGAAATCGGGAATCTGATTGCTGAAGCAATGGAGAAAGTTGGTAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20877 GCTAATAATGATGCAGAAATCGGGAATCTGATTGCTGAAGCAATGGAGAAAGTTGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b17958 AACGGCTCTATCACTGTTGAAGAAGCAAAAGGATTTGAAACCGTTTTGGATGTTGTTGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20877 AACGGCTCTATCACTGTTGAAGAAGCAAAAGGATTTGAAACCGTTTTGGATGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b17958 GGAATGAATTTCAATAGAGGTTACCTCTCTAGCTACTTCGCAACAAATCCAGAAACTCAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20877 GGAATGAATTTCAATAGAGGTTACCTCTCTAGCTACTTCGCAACAAATCCAGAAACTCAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b17958 GAATGTGTATTAGAAGACGCTTTGGTTCTAATCTACGATAAGAAAATTTCTGGGATCAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20877 GAATGTGTATTAGAAGACGCTTTGGTTCTAATCTACGATAAGAAAATTTCTGGGATCAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b17958 GATTTCCTTCCTGTTTTACAACAAGTTGCTGAATCCGGCCGTCCTCTTCTTATTATAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20877 GATTTCCTTCCTGTTTTACAACAAGTTGCTGAATCCGGCCGTCCTCTTCTTATTATAGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b17958 GAAGACATTGAAGGCGAAGCTTTAGCTACTTTGGTCGTGAACAGAATTCGTGGAGGATTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20877 GAAGACATTGAAGGCGAAGCTTTAGCTACTTTGGTCGTGAACAGAATTCGTGGAGGATTC
              490       500       510       520       530       540

              550     
b17958 CGGGTTTGCGCAGTT
       :::::::::::::::
b20877 CGGGTTTGCGCAGTT
              550     

</pre>
<hr>
<A name=b5020>
<pre>
>><a onClick="window.open('getRecord.php?id=b5020',
                                'cpndb_record'); return false;" href="getRecord.php?id=b5020" target=_"blank">b5020</a> AY447001 Chlamydia trachomatis E/UW-5/CX          (555 nt)
 initn: 2775 init1: 2775 opt: 2775  Z-score: 96.9  bits: 27.8 E():   26
banded Smith-Waterman score: 2775; 100.0% identity (100.0% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b17958 GCTACTGTTCTTGCTGAAGCTATCTATACAGAAGGATTACGCAATGTAACAGCTGGAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b5020  GCTACTGTTCTTGCTGAAGCTATCTATACAGAAGGATTACGCAATGTAACAGCTGGAGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b17958 AATCCAATGGACCTCAAACGAGGTATTGATAAAGCTGTTAAGGTTGTTGTTGATCAAATC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b5020  AATCCAATGGACCTCAAACGAGGTATTGATAAAGCTGTTAAGGTTGTTGTTGATCAAATC
               70        80        90       100       110       120

              130       140       150       160       170       180
b17958 AGAAAAATCAGCAAACCTGTTCAGCATCATAAAGAAATTGCTCAAGTTGCAACAATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b5020  AGAAAAATCAGCAAACCTGTTCAGCATCATAAAGAAATTGCTCAAGTTGCAACAATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b17958 GCTAATAATGATGCAGAAATCGGGAATCTGATTGCTGAAGCAATGGAGAAAGTTGGTAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b5020  GCTAATAATGATGCAGAAATCGGGAATCTGATTGCTGAAGCAATGGAGAAAGTTGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b17958 AACGGCTCTATCACTGTTGAAGAAGCAAAAGGATTTGAAACCGTTTTGGATGTTGTTGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b5020  AACGGCTCTATCACTGTTGAAGAAGCAAAAGGATTTGAAACCGTTTTGGATGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b17958 GGAATGAATTTCAATAGAGGTTACCTCTCTAGCTACTTCGCAACAAATCCAGAAACTCAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b5020  GGAATGAATTTCAATAGAGGTTACCTCTCTAGCTACTTCGCAACAAATCCAGAAACTCAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b17958 GAATGTGTATTAGAAGACGCTTTGGTTCTAATCTACGATAAGAAAATTTCTGGGATCAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b5020  GAATGTGTATTAGAAGACGCTTTGGTTCTAATCTACGATAAGAAAATTTCTGGGATCAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b17958 GATTTCCTTCCTGTTTTACAACAAGTTGCTGAATCCGGCCGTCCTCTTCTTATTATAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b5020  GATTTCCTTCCTGTTTTACAACAAGTTGCTGAATCCGGCCGTCCTCTTCTTATTATAGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b17958 GAAGACATTGAAGGCGAAGCTTTAGCTACTTTGGTCGTGAACAGAATTCGTGGAGGATTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b5020  GAAGACATTGAAGGCGAAGCTTTAGCTACTTTGGTCGTGAACAGAATTCGTGGAGGATTC
              490       500       510       520       530       540

              550     
b17958 CGGGTTTGCGCAGTT
       :::::::::::::::
b5020  CGGGTTTGCGCAGTT
              550     

</pre>
<hr>
<A name=b20871>
<pre>
>><a onClick="window.open('getRecord.php?id=b20871',
                                'cpndb_record'); return false;" href="getRecord.php?id=b20871" target=_"blank">b20871</a> HE601801 Chlamydia trachomatis E/SW3             (555 nt)
 initn: 2766 init1: 2766 opt: 2766  Z-score: 96.7  bits: 27.7 E():   26
banded Smith-Waterman score: 2766; 99.8% identity (99.8% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b17958 GCTACTGTTCTTGCTGAAGCTATCTATACAGAAGGATTACGCAATGTAACAGCTGGAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20871 GCTACTGTTCTTGCTGAAGCTATCTATACAGAAGGATTACGCAATGTAACAGCTGGAGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b17958 AATCCAATGGACCTCAAACGAGGTATTGATAAAGCTGTTAAGGTTGTTGTTGATCAAATC
       :::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::
b20871 AATCCAATGGACCTTAAACGAGGTATTGATAAAGCTGTTAAGGTTGTTGTTGATCAAATC
               70        80        90       100       110       120

              130       140       150       160       170       180
b17958 AGAAAAATCAGCAAACCTGTTCAGCATCATAAAGAAATTGCTCAAGTTGCAACAATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20871 AGAAAAATCAGCAAACCTGTTCAGCATCATAAAGAAATTGCTCAAGTTGCAACAATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b17958 GCTAATAATGATGCAGAAATCGGGAATCTGATTGCTGAAGCAATGGAGAAAGTTGGTAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20871 GCTAATAATGATGCAGAAATCGGGAATCTGATTGCTGAAGCAATGGAGAAAGTTGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b17958 AACGGCTCTATCACTGTTGAAGAAGCAAAAGGATTTGAAACCGTTTTGGATGTTGTTGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20871 AACGGCTCTATCACTGTTGAAGAAGCAAAAGGATTTGAAACCGTTTTGGATGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b17958 GGAATGAATTTCAATAGAGGTTACCTCTCTAGCTACTTCGCAACAAATCCAGAAACTCAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20871 GGAATGAATTTCAATAGAGGTTACCTCTCTAGCTACTTCGCAACAAATCCAGAAACTCAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b17958 GAATGTGTATTAGAAGACGCTTTGGTTCTAATCTACGATAAGAAAATTTCTGGGATCAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20871 GAATGTGTATTAGAAGACGCTTTGGTTCTAATCTACGATAAGAAAATTTCTGGGATCAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b17958 GATTTCCTTCCTGTTTTACAACAAGTTGCTGAATCCGGCCGTCCTCTTCTTATTATAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20871 GATTTCCTTCCTGTTTTACAACAAGTTGCTGAATCCGGCCGTCCTCTTCTTATTATAGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b17958 GAAGACATTGAAGGCGAAGCTTTAGCTACTTTGGTCGTGAACAGAATTCGTGGAGGATTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20871 GAAGACATTGAAGGCGAAGCTTTAGCTACTTTGGTCGTGAACAGAATTCGTGGAGGATTC
              490       500       510       520       530       540

              550     
b17958 CGGGTTTGCGCAGTT
       :::::::::::::::
b20871 CGGGTTTGCGCAGTT
              550     

</pre>
<hr>
<A name=b17412>
<pre>
>><a onClick="window.open('getRecord.php?id=b17412',
                                'cpndb_record'); return false;" href="getRecord.php?id=b17412" target=_"blank">b17412</a> CP002052 Chlamydia trachomatis D-EC              (555 nt)
 initn: 2766 init1: 2766 opt: 2766  Z-score: 96.7  bits: 27.7 E():   26
banded Smith-Waterman score: 2766; 99.8% identity (99.8% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b17958 GCTACTGTTCTTGCTGAAGCTATCTATACAGAAGGATTACGCAATGTAACAGCTGGAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b17412 GCTACTGTTCTTGCTGAAGCTATCTATACAGAAGGATTACGCAATGTAACAGCTGGAGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b17958 AATCCAATGGACCTCAAACGAGGTATTGATAAAGCTGTTAAGGTTGTTGTTGATCAAATC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b17412 AATCCAATGGACCTCAAACGAGGTATTGATAAAGCTGTTAAGGTTGTTGTTGATCAAATC
               70        80        90       100       110       120

              130       140       150       160       170       180
b17958 AGAAAAATCAGCAAACCTGTTCAGCATCATAAAGAAATTGCTCAAGTTGCAACAATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b17412 AGAAAAATCAGCAAACCTGTTCAGCATCATAAAGAAATTGCTCAAGTTGCAACAATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b17958 GCTAATAATGATGCAGAAATCGGGAATCTGATTGCTGAAGCAATGGAGAAAGTTGGTAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b17412 GCTAATAATGATGCAGAAATCGGGAATCTGATTGCTGAAGCAATGGAGAAAGTTGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b17958 AACGGCTCTATCACTGTTGAAGAAGCAAAAGGATTTGAAACCGTTTTGGATGTTGTTGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::
b17412 AACGGCTCTATCACTGTTGAAGAAGCAAAAGGATTTGAAACCGTTTTGGATATTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b17958 GGAATGAATTTCAATAGAGGTTACCTCTCTAGCTACTTCGCAACAAATCCAGAAACTCAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b17412 GGAATGAATTTCAATAGAGGTTACCTCTCTAGCTACTTCGCAACAAATCCAGAAACTCAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b17958 GAATGTGTATTAGAAGACGCTTTGGTTCTAATCTACGATAAGAAAATTTCTGGGATCAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b17412 GAATGTGTATTAGAAGACGCTTTGGTTCTAATCTACGATAAGAAAATTTCTGGGATCAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b17958 GATTTCCTTCCTGTTTTACAACAAGTTGCTGAATCCGGCCGTCCTCTTCTTATTATAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b17412 GATTTCCTTCCTGTTTTACAACAAGTTGCTGAATCCGGCCGTCCTCTTCTTATTATAGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b17958 GAAGACATTGAAGGCGAAGCTTTAGCTACTTTGGTCGTGAACAGAATTCGTGGAGGATTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b17412 GAAGACATTGAAGGCGAAGCTTTAGCTACTTTGGTCGTGAACAGAATTCGTGGAGGATTC
              490       500       510       520       530       540

              550     
b17958 CGGGTTTGCGCAGTT
       :::::::::::::::
b17412 CGGGTTTGCGCAGTT
              550     

</pre>
<hr>
<A name=b5854>
<pre>
>><a onClick="window.open('getRecord.php?id=b5854',
                                'cpndb_record'); return false;" href="getRecord.php?id=b5854" target=_"blank">b5854</a> AJ783840 Chlamydia trachomatis serovar D          (555 nt)
 initn: 2766 init1: 2766 opt: 2766  Z-score: 96.7  bits: 27.7 E():   26
banded Smith-Waterman score: 2766; 99.8% identity (99.8% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b17958 GCTACTGTTCTTGCTGAAGCTATCTATACAGAAGGATTACGCAATGTAACAGCTGGAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b5854  GCTACTGTTCTTGCTGAAGCTATCTATACAGAAGGATTACGCAATGTAACAGCTGGAGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b17958 AATCCAATGGACCTCAAACGAGGTATTGATAAAGCTGTTAAGGTTGTTGTTGATCAAATC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b5854  AATCCAATGGACCTCAAACGAGGTATTGATAAAGCTGTTAAGGTTGTTGTTGATCAAATC
               70        80        90       100       110       120

              130       140       150       160       170       180
b17958 AGAAAAATCAGCAAACCTGTTCAGCATCATAAAGAAATTGCTCAAGTTGCAACAATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b5854  AGAAAAATCAGCAAACCTGTTCAGCATCATAAAGAAATTGCTCAAGTTGCAACAATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b17958 GCTAATAATGATGCAGAAATCGGGAATCTGATTGCTGAAGCAATGGAGAAAGTTGGTAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b5854  GCTAATAATGATGCAGAAATCGGGAATCTGATTGCTGAAGCAATGGAGAAAGTTGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b17958 AACGGCTCTATCACTGTTGAAGAAGCAAAAGGATTTGAAACCGTTTTGGATGTTGTTGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::
b5854  AACGGCTCTATCACTGTTGAAGAAGCAAAAGGATTTGAAACCGTTTTGGATATTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b17958 GGAATGAATTTCAATAGAGGTTACCTCTCTAGCTACTTCGCAACAAATCCAGAAACTCAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b5854  GGAATGAATTTCAATAGAGGTTACCTCTCTAGCTACTTCGCAACAAATCCAGAAACTCAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b17958 GAATGTGTATTAGAAGACGCTTTGGTTCTAATCTACGATAAGAAAATTTCTGGGATCAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b5854  GAATGTGTATTAGAAGACGCTTTGGTTCTAATCTACGATAAGAAAATTTCTGGGATCAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b17958 GATTTCCTTCCTGTTTTACAACAAGTTGCTGAATCCGGCCGTCCTCTTCTTATTATAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b5854  GATTTCCTTCCTGTTTTACAACAAGTTGCTGAATCCGGCCGTCCTCTTCTTATTATAGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b17958 GAAGACATTGAAGGCGAAGCTTTAGCTACTTTGGTCGTGAACAGAATTCGTGGAGGATTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b5854  GAAGACATTGAAGGCGAAGCTTTAGCTACTTTGGTCGTGAACAGAATTCGTGGAGGATTC
              490       500       510       520       530       540

              550     
b17958 CGGGTTTGCGCAGTT
       :::::::::::::::
b5854  CGGGTTTGCGCAGTT
              550     

</pre>
<hr>
<A name=b1318>
<pre>
>><a onClick="window.open('getRecord.php?id=b1318',
                                'cpndb_record'); return false;" href="getRecord.php?id=b1318" target=_"blank">b1318</a> NC_000117 Chlamydia trachomatis D/UW-3/CX         (555 nt)
 initn: 2766 init1: 2766 opt: 2766  Z-score: 96.7  bits: 27.7 E():   26
banded Smith-Waterman score: 2766; 99.8% identity (99.8% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b17958 GCTACTGTTCTTGCTGAAGCTATCTATACAGAAGGATTACGCAATGTAACAGCTGGAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1318  GCTACTGTTCTTGCTGAAGCTATCTATACAGAAGGATTACGCAATGTAACAGCTGGAGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b17958 AATCCAATGGACCTCAAACGAGGTATTGATAAAGCTGTTAAGGTTGTTGTTGATCAAATC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1318  AATCCAATGGACCTCAAACGAGGTATTGATAAAGCTGTTAAGGTTGTTGTTGATCAAATC
               70        80        90       100       110       120

              130       140       150       160       170       180
b17958 AGAAAAATCAGCAAACCTGTTCAGCATCATAAAGAAATTGCTCAAGTTGCAACAATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1318  AGAAAAATCAGCAAACCTGTTCAGCATCATAAAGAAATTGCTCAAGTTGCAACAATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b17958 GCTAATAATGATGCAGAAATCGGGAATCTGATTGCTGAAGCAATGGAGAAAGTTGGTAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1318  GCTAATAATGATGCAGAAATCGGGAATCTGATTGCTGAAGCAATGGAGAAAGTTGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b17958 AACGGCTCTATCACTGTTGAAGAAGCAAAAGGATTTGAAACCGTTTTGGATGTTGTTGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::
b1318  AACGGCTCTATCACTGTTGAAGAAGCAAAAGGATTTGAAACCGTTTTGGATATTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b17958 GGAATGAATTTCAATAGAGGTTACCTCTCTAGCTACTTCGCAACAAATCCAGAAACTCAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1318  GGAATGAATTTCAATAGAGGTTACCTCTCTAGCTACTTCGCAACAAATCCAGAAACTCAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b17958 GAATGTGTATTAGAAGACGCTTTGGTTCTAATCTACGATAAGAAAATTTCTGGGATCAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1318  GAATGTGTATTAGAAGACGCTTTGGTTCTAATCTACGATAAGAAAATTTCTGGGATCAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b17958 GATTTCCTTCCTGTTTTACAACAAGTTGCTGAATCCGGCCGTCCTCTTCTTATTATAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1318  GATTTCCTTCCTGTTTTACAACAAGTTGCTGAATCCGGCCGTCCTCTTCTTATTATAGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b17958 GAAGACATTGAAGGCGAAGCTTTAGCTACTTTGGTCGTGAACAGAATTCGTGGAGGATTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1318  GAAGACATTGAAGGCGAAGCTTTAGCTACTTTGGTCGTGAACAGAATTCGTGGAGGATTC
              490       500       510       520       530       540

              550     
b17958 CGGGTTTGCGCAGTT
       :::::::::::::::
b1318  CGGGTTTGCGCAGTT
              550     

</pre>
<hr>
<A name=b22799>
<pre>
>><a onClick="window.open('getRecord.php?id=b22799',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22799" target=_"blank">b22799</a> HE601794 Chlamydia trachomatis K/SotonK1         (555 nt)
 initn: 2766 init1: 2766 opt: 2766  Z-score: 96.7  bits: 27.7 E():   26
banded Smith-Waterman score: 2766; 99.8% identity (99.8% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b17958 GCTACTGTTCTTGCTGAAGCTATCTATACAGAAGGATTACGCAATGTAACAGCTGGAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22799 GCTACTGTTCTTGCTGAAGCTATCTATACAGAAGGATTACGCAATGTAACAGCTGGAGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b17958 AATCCAATGGACCTCAAACGAGGTATTGATAAAGCTGTTAAGGTTGTTGTTGATCAAATC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22799 AATCCAATGGACCTCAAACGAGGTATTGATAAAGCTGTTAAGGTTGTTGTTGATCAAATC
               70        80        90       100       110       120

              130       140       150       160       170       180
b17958 AGAAAAATCAGCAAACCTGTTCAGCATCATAAAGAAATTGCTCAAGTTGCAACAATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22799 AGAAAAATCAGCAAACCTGTTCAGCATCATAAAGAAATTGCTCAAGTTGCAACAATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b17958 GCTAATAATGATGCAGAAATCGGGAATCTGATTGCTGAAGCAATGGAGAAAGTTGGTAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22799 GCTAATAATGATGCAGAAATCGGGAATCTGATTGCTGAAGCAATGGAGAAAGTTGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b17958 AACGGCTCTATCACTGTTGAAGAAGCAAAAGGATTTGAAACCGTTTTGGATGTTGTTGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::
b22799 AACGGCTCTATCACTGTTGAAGAAGCAAAAGGATTTGAAACCGTTTTGGATATTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b17958 GGAATGAATTTCAATAGAGGTTACCTCTCTAGCTACTTCGCAACAAATCCAGAAACTCAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22799 GGAATGAATTTCAATAGAGGTTACCTCTCTAGCTACTTCGCAACAAATCCAGAAACTCAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b17958 GAATGTGTATTAGAAGACGCTTTGGTTCTAATCTACGATAAGAAAATTTCTGGGATCAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22799 GAATGTGTATTAGAAGACGCTTTGGTTCTAATCTACGATAAGAAAATTTCTGGGATCAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b17958 GATTTCCTTCCTGTTTTACAACAAGTTGCTGAATCCGGCCGTCCTCTTCTTATTATAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22799 GATTTCCTTCCTGTTTTACAACAAGTTGCTGAATCCGGCCGTCCTCTTCTTATTATAGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b17958 GAAGACATTGAAGGCGAAGCTTTAGCTACTTTGGTCGTGAACAGAATTCGTGGAGGATTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22799 GAAGACATTGAAGGCGAAGCTTTAGCTACTTTGGTCGTGAACAGAATTCGTGGAGGATTC
              490       500       510       520       530       540

              550     
b17958 CGGGTTTGCGCAGTT
       :::::::::::::::
b22799 CGGGTTTGCGCAGTT
              550     

</pre>
<hr>
<A name=b22805>
<pre>
>><a onClick="window.open('getRecord.php?id=b22805',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22805" target=_"blank">b22805</a> HE601799 Chlamydia trachomatis D/SotonD5         (555 nt)
 initn: 2766 init1: 2766 opt: 2766  Z-score: 96.7  bits: 27.7 E():   26
banded Smith-Waterman score: 2766; 99.8% identity (99.8% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b17958 GCTACTGTTCTTGCTGAAGCTATCTATACAGAAGGATTACGCAATGTAACAGCTGGAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22805 GCTACTGTTCTTGCTGAAGCTATCTATACAGAAGGATTACGCAATGTAACAGCTGGAGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b17958 AATCCAATGGACCTCAAACGAGGTATTGATAAAGCTGTTAAGGTTGTTGTTGATCAAATC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22805 AATCCAATGGACCTCAAACGAGGTATTGATAAAGCTGTTAAGGTTGTTGTTGATCAAATC
               70        80        90       100       110       120

              130       140       150       160       170       180
b17958 AGAAAAATCAGCAAACCTGTTCAGCATCATAAAGAAATTGCTCAAGTTGCAACAATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22805 AGAAAAATCAGCAAACCTGTTCAGCATCATAAAGAAATTGCTCAAGTTGCAACAATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b17958 GCTAATAATGATGCAGAAATCGGGAATCTGATTGCTGAAGCAATGGAGAAAGTTGGTAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22805 GCTAATAATGATGCAGAAATCGGGAATCTGATTGCTGAAGCAATGGAGAAAGTTGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b17958 AACGGCTCTATCACTGTTGAAGAAGCAAAAGGATTTGAAACCGTTTTGGATGTTGTTGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::
b22805 AACGGCTCTATCACTGTTGAAGAAGCAAAAGGATTTGAAACCGTTTTGGATATTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b17958 GGAATGAATTTCAATAGAGGTTACCTCTCTAGCTACTTCGCAACAAATCCAGAAACTCAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22805 GGAATGAATTTCAATAGAGGTTACCTCTCTAGCTACTTCGCAACAAATCCAGAAACTCAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b17958 GAATGTGTATTAGAAGACGCTTTGGTTCTAATCTACGATAAGAAAATTTCTGGGATCAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22805 GAATGTGTATTAGAAGACGCTTTGGTTCTAATCTACGATAAGAAAATTTCTGGGATCAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b17958 GATTTCCTTCCTGTTTTACAACAAGTTGCTGAATCCGGCCGTCCTCTTCTTATTATAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22805 GATTTCCTTCCTGTTTTACAACAAGTTGCTGAATCCGGCCGTCCTCTTCTTATTATAGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b17958 GAAGACATTGAAGGCGAAGCTTTAGCTACTTTGGTCGTGAACAGAATTCGTGGAGGATTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22805 GAAGACATTGAAGGCGAAGCTTTAGCTACTTTGGTCGTGAACAGAATTCGTGGAGGATTC
              490       500       510       520       530       540

              550     
b17958 CGGGTTTGCGCAGTT
       :::::::::::::::
b22805 CGGGTTTGCGCAGTT
              550     

</pre>
<hr>
<A name=b22808>
<pre>
>><a onClick="window.open('getRecord.php?id=b22808',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22808" target=_"blank">b22808</a> HE601800 Chlamydia trachomatis D/SotonD6         (555 nt)
 initn: 2766 init1: 2766 opt: 2766  Z-score: 96.7  bits: 27.7 E():   26
banded Smith-Waterman score: 2766; 99.8% identity (99.8% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b17958 GCTACTGTTCTTGCTGAAGCTATCTATACAGAAGGATTACGCAATGTAACAGCTGGAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22808 GCTACTGTTCTTGCTGAAGCTATCTATACAGAAGGATTACGCAATGTAACAGCTGGAGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b17958 AATCCAATGGACCTCAAACGAGGTATTGATAAAGCTGTTAAGGTTGTTGTTGATCAAATC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22808 AATCCAATGGACCTCAAACGAGGTATTGATAAAGCTGTTAAGGTTGTTGTTGATCAAATC
               70        80        90       100       110       120

              130       140       150       160       170       180
b17958 AGAAAAATCAGCAAACCTGTTCAGCATCATAAAGAAATTGCTCAAGTTGCAACAATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22808 AGAAAAATCAGCAAACCTGTTCAGCATCATAAAGAAATTGCTCAAGTTGCAACAATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b17958 GCTAATAATGATGCAGAAATCGGGAATCTGATTGCTGAAGCAATGGAGAAAGTTGGTAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22808 GCTAATAATGATGCAGAAATCGGGAATCTGATTGCTGAAGCAATGGAGAAAGTTGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b17958 AACGGCTCTATCACTGTTGAAGAAGCAAAAGGATTTGAAACCGTTTTGGATGTTGTTGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::
b22808 AACGGCTCTATCACTGTTGAAGAAGCAAAAGGATTTGAAACCGTTTTGGATATTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b17958 GGAATGAATTTCAATAGAGGTTACCTCTCTAGCTACTTCGCAACAAATCCAGAAACTCAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22808 GGAATGAATTTCAATAGAGGTTACCTCTCTAGCTACTTCGCAACAAATCCAGAAACTCAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b17958 GAATGTGTATTAGAAGACGCTTTGGTTCTAATCTACGATAAGAAAATTTCTGGGATCAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22808 GAATGTGTATTAGAAGACGCTTTGGTTCTAATCTACGATAAGAAAATTTCTGGGATCAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b17958 GATTTCCTTCCTGTTTTACAACAAGTTGCTGAATCCGGCCGTCCTCTTCTTATTATAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22808 GATTTCCTTCCTGTTTTACAACAAGTTGCTGAATCCGGCCGTCCTCTTCTTATTATAGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b17958 GAAGACATTGAAGGCGAAGCTTTAGCTACTTTGGTCGTGAACAGAATTCGTGGAGGATTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22808 GAAGACATTGAAGGCGAAGCTTTAGCTACTTTGGTCGTGAACAGAATTCGTGGAGGATTC
              490       500       510       520       530       540

              550     
b17958 CGGGTTTGCGCAGTT
       :::::::::::::::
b22808 CGGGTTTGCGCAGTT
              550     

</pre>
<hr>
<A name=b22817>
<pre>
>><a onClick="window.open('getRecord.php?id=b22817',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22817" target=_"blank">b22817</a> HE601807 Chlamydia trachomatis G/SotonG1         (555 nt)
 initn: 2766 init1: 2766 opt: 2766  Z-score: 96.7  bits: 27.7 E():   26
banded Smith-Waterman score: 2766; 99.8% identity (99.8% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b17958 GCTACTGTTCTTGCTGAAGCTATCTATACAGAAGGATTACGCAATGTAACAGCTGGAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22817 GCTACTGTTCTTGCTGAAGCTATCTATACAGAAGGATTACGCAATGTAACAGCTGGAGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b17958 AATCCAATGGACCTCAAACGAGGTATTGATAAAGCTGTTAAGGTTGTTGTTGATCAAATC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22817 AATCCAATGGACCTCAAACGAGGTATTGATAAAGCTGTTAAGGTTGTTGTTGATCAAATC
               70        80        90       100       110       120

              130       140       150       160       170       180
b17958 AGAAAAATCAGCAAACCTGTTCAGCATCATAAAGAAATTGCTCAAGTTGCAACAATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22817 AGAAAAATCAGCAAACCTGTTCAGCATCATAAAGAAATTGCTCAAGTTGCAACAATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b17958 GCTAATAATGATGCAGAAATCGGGAATCTGATTGCTGAAGCAATGGAGAAAGTTGGTAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22817 GCTAATAATGATGCAGAAATCGGGAATCTGATTGCTGAAGCAATGGAGAAAGTTGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b17958 AACGGCTCTATCACTGTTGAAGAAGCAAAAGGATTTGAAACCGTTTTGGATGTTGTTGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::
b22817 AACGGCTCTATCACTGTTGAAGAAGCAAAAGGATTTGAAACCGTTTTGGATATTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b17958 GGAATGAATTTCAATAGAGGTTACCTCTCTAGCTACTTCGCAACAAATCCAGAAACTCAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22817 GGAATGAATTTCAATAGAGGTTACCTCTCTAGCTACTTCGCAACAAATCCAGAAACTCAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b17958 GAATGTGTATTAGAAGACGCTTTGGTTCTAATCTACGATAAGAAAATTTCTGGGATCAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22817 GAATGTGTATTAGAAGACGCTTTGGTTCTAATCTACGATAAGAAAATTTCTGGGATCAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b17958 GATTTCCTTCCTGTTTTACAACAAGTTGCTGAATCCGGCCGTCCTCTTCTTATTATAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22817 GATTTCCTTCCTGTTTTACAACAAGTTGCTGAATCCGGCCGTCCTCTTCTTATTATAGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b17958 GAAGACATTGAAGGCGAAGCTTTAGCTACTTTGGTCGTGAACAGAATTCGTGGAGGATTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22817 GAAGACATTGAAGGCGAAGCTTTAGCTACTTTGGTCGTGAACAGAATTCGTGGAGGATTC
              490       500       510       520       530       540

              550     
b17958 CGGGTTTGCGCAGTT
       :::::::::::::::
b22817 CGGGTTTGCGCAGTT
              550     

</pre>
<hr>
<p><pre>


555 residues in 1 query   sequences
10433008 residues in 18820 library sequences
 Scomplib [35.03]
 start: Mon Apr 29 03:17:46 2024 done: Mon Apr 29 03:17:47 2024
 Total Scan time:  1.470 Total Display time:  0.000

Function used was FASTA [version 35.03 Feb. 18, 2008]
</pre>