/data/www/cpndb/fasta_results/b8436.fasta# /data/www/cpndb/fasta35 -E 200 -Q -m 6 -b 20 -d 20 -z 2 -H /data/www/cpndb/fasta_results/b8436 /data/www/cpndb/blastDBs/reference_a_nut
<pre>
FASTA searches a protein or DNA sequence data bank
 version 35.03 Feb. 18, 2008
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

</pre>
Query: /data/www/cpndb/fasta_results/b8436
<pre>
  1>>>b8436 555 nt - 555 nt
Library: /data/www/cpndb/blastDBs/reference_a_nut 10433008 residues in 18820 sequences

10433008 residues in 18820 sequences
Statistics: MLE_cen statistics: Lambda= 0.0026;  K=1.279e-05 (cen=941)
Algorithm: FASTA (3.5 Sept 2006) [optimized]
Parameters: +5/-4 matrix (5:-4) ktup: 6
 join: 51, opt: 36, open/ext: -12/-4, width:  16
 Scan time:  1.380
</pre>
<p>
<hr>
<p>
<p><pre>

The best scores are:                                      opt bits E(18820)
<a onClick="window.open('getRecord.php?id=b1534',
                                'cpndb_record'); return false;" href="getRecord.php?id=b1534" target=_"blank">b1534</a> AF461536 Campylobacter jejuni Penner typ ( 555) [f] 2775 26.8      49 <A HREF="#b1534">align</A>
<a onClick="window.open('getRecord.php?id=b1535',
                                'cpndb_record'); return false;" href="getRecord.php?id=b1535" target=_"blank">b1535</a> AF461537 Campylobacter jejuni Penner typ ( 555) [f] 2775 26.8      49 <A HREF="#b1535">align</A>
<a onClick="window.open('getRecord.php?id=b19950',
                                'cpndb_record'); return false;" href="getRecord.php?id=b19950" target=_"blank">b19950</a> JH376990 Campylobacter jejuni subsp. je ( 555) [f] 2775 26.8      49 <A HREF="#b19950">align</A>
<a onClick="window.open('getRecord.php?id=b1531',
                                'cpndb_record'); return false;" href="getRecord.php?id=b1531" target=_"blank">b1531</a> AF461533 Campylobacter jejuni Penner typ ( 555) [f] 2766 26.8      50 <A HREF="#b1531">align</A>
<a onClick="window.open('getRecord.php?id=b27522',
                                'cpndb_record'); return false;" href="getRecord.php?id=b27522" target=_"blank">b27522</a> NZ_CAFV01000001 Campylobacter  jejuni   ( 555) [f] 2766 26.8      50 <A HREF="#b27522">align</A>
<a onClick="window.open('getRecord.php?id=b1533',
                                'cpndb_record'); return false;" href="getRecord.php?id=b1533" target=_"blank">b1533</a> AF461535 Campylobacter jejuni Penner typ ( 555) [f] 2766 26.8      50 <A HREF="#b1533">align</A>
<a onClick="window.open('getRecord.php?id=b27521',
                                'cpndb_record'); return false;" href="getRecord.php?id=b27521" target=_"blank">b27521</a> NZ_CAFU01000006 Campylobacter  jejuni   ( 555) [f] 2766 26.8      50 <A HREF="#b27521">align</A>
<a onClick="window.open('getRecord.php?id=b27519',
                                'cpndb_record'); return false;" href="getRecord.php?id=b27519" target=_"blank">b27519</a> NZ_CAFS01000008 Campylobacter  jejuni   ( 555) [f] 2766 26.8      50 <A HREF="#b27519">align</A>
<a onClick="window.open('getRecord.php?id=b27520',
                                'cpndb_record'); return false;" href="getRecord.php?id=b27520" target=_"blank">b27520</a> NZ_CAFT01000019 Campylobacter  jejuni   ( 555) [f] 2766 26.8      50 <A HREF="#b27520">align</A>
<a onClick="window.open('getRecord.php?id=b1274',
                                'cpndb_record'); return false;" href="getRecord.php?id=b1274" target=_"blank">b1274</a> NC_002163 Campylobacter jejuni NCTC11168 ( 555) [f] 2766 26.8      50 <A HREF="#b1274">align</A>
<a onClick="window.open('getRecord.php?id=b1252',
                                'cpndb_record'); return false;" href="getRecord.php?id=b1252" target=_"blank">b1252</a> AY044099 Campylobacter jejuni NCTC11168  ( 555) [f] 2766 26.8      50 <A HREF="#b1252">align</A>
<a onClick="window.open('getRecord.php?id=b7778',
                                'cpndb_record'); return false;" href="getRecord.php?id=b7778" target=_"blank">b7778</a> AY789009 Campylobacter jejuni subsp. jej ( 555) [f] 2766 26.8      50 <A HREF="#b7778">align</A>
<a onClick="window.open('getRecord.php?id=b27518',
                                'cpndb_record'); return false;" href="getRecord.php?id=b27518" target=_"blank">b27518</a> NZ_CAFR01000064 Campylobacter  jejuni   ( 555) [f] 2766 26.8      50 <A HREF="#b27518">align</A>
<a onClick="window.open('getRecord.php?id=b21505',
                                'cpndb_record'); return false;" href="getRecord.php?id=b21505" target=_"blank">b21505</a> HE978252 Campylobacter jejuni subsp. je ( 555) [f] 2766 26.8      50 <A HREF="#b21505">align</A>
<a onClick="window.open('getRecord.php?id=b1542',
                                'cpndb_record'); return false;" href="getRecord.php?id=b1542" target=_"blank">b1542</a> af461064 Campylobacter jejuni serotype O ( 555) [f] 2766 26.8      50 <A HREF="#b1542">align</A>
<a onClick="window.open('getRecord.php?id=b19949',
                                'cpndb_record'); return false;" href="getRecord.php?id=b19949" target=_"blank">b19949</a> JH377088 Campylobacter jejuni subsp. je ( 555) [f] 2766 26.8      50 <A HREF="#b19949">align</A>
<a onClick="window.open('getRecord.php?id=v1408',
                                'cpndb_record'); return false;" href="getRecord.php?id=v1408" target=_"blank">v1408</a> 516 Campylobacter jejuni subsp. jejuni N ( 555) [f] 2766 26.8      50 <A HREF="#v1408">align</A>
<a onClick="window.open('getRecord.php?id=b1532',
                                'cpndb_record'); return false;" href="getRecord.php?id=b1532" target=_"blank">b1532</a> AF461534 Campylobacter jejuni Penner typ ( 555) [f] 2766 26.8      50 <A HREF="#b1532">align</A>
<a onClick="window.open('getRecord.php?id=b7415',
                                'cpndb_record'); return false;" href="getRecord.php?id=b7415" target=_"blank">b7415</a> NC_003912 Campylobacter jejuni RM1221 AT ( 555) [f] 2734 26.7      54 <A HREF="#b7415">align</A>
<a onClick="window.open('getRecord.php?id=b18192',
                                'cpndb_record'); return false;" href="getRecord.php?id=b18192" target=_"blank">b18192</a> CP001960 Campylobacter jejuni subsp. je ( 555) [f] 2734 26.7      54 <A HREF="#b18192">align</A>
</pre><p><hr><p>

>>>b8436, 555 nt vs /data/www/cpndb/blastDBs/reference_a_nut library

<A name=b1534>
<pre>
>><a onClick="window.open('getRecord.php?id=b1534',
                                'cpndb_record'); return false;" href="getRecord.php?id=b1534" target=_"blank">b1534</a> AF461536 Campylobacter jejuni Penner type strain  (555 nt)
 initn: 2775 init1: 2775 opt: 2775  Z-score: 92.0  bits: 26.8 E():   49
banded Smith-Waterman score: 2775; 100.0% identity (100.0% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b8436  GCAACGGTTTTAGCTCATGCAATTTTCAAAGAAGGTTTAAGAAATATCACAGCAGGTGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1534  GCAACGGTTTTAGCTCATGCAATTTTCAAAGAAGGTTTAAGAAATATCACAGCAGGTGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b8436  AATCCTATCGAGGTAAAACGCGGTATGGATAAAGCTTGCGAAGCTATAGTAGCAGAACTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1534  AATCCTATCGAGGTAAAACGCGGTATGGATAAAGCTTGCGAAGCTATAGTAGCAGAACTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b8436  AAAAAACTTTCTCGCGAAGTAAAAGATAAAAAAGAAATTGCACAAGTTGCTACAATCTCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1534  AAAAAACTTTCTCGCGAAGTAAAAGATAAAAAAGAAATTGCACAAGTTGCTACAATCTCA
              130       140       150       160       170       180

              190       200       210       220       230       240
b8436  GCCAACTCTGATGAAAAAATCGGAAATTTAATCGCTGATGCTATGGAAAAAGTGGGCAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1534  GCCAACTCTGATGAAAAAATCGGAAATTTAATCGCTGATGCTATGGAAAAAGTGGGCAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b8436  GATGGTGTTATCACTGTTGAGGAGGCAAAATCAATCAATGATGAATTAAATGTAGTTGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1534  GATGGTGTTATCACTGTTGAGGAGGCAAAATCAATCAATGATGAATTAAATGTAGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b8436  GGTATGCAATTTGACAGAGGTTATTTAAGCCCTTATTTTATCACTAATGCAGAAAAAATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1534  GGTATGCAATTTGACAGAGGTTATTTAAGCCCTTATTTTATCACTAATGCAGAAAAAATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b8436  ACAGTAGAGCTTTCAAGCCCTTATATCCTGCTTTTTGATAAAAAAATTACAAATTTAAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1534  ACAGTAGAGCTTTCAAGCCCTTATATCCTGCTTTTTGATAAAAAAATTACAAATTTAAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b8436  GATTTATTACCGGTTTTAGAACAAATTCAAAAAACAGGCAAACCACTTTTAATTATCGCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1534  GATTTATTACCGGTTTTAGAACAAATTCAAAAAACAGGCAAACCACTTTTAATTATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b8436  GAAGATATTGAAGGTGAAGCGCTTGCAACTTTGGTTGTAAATAAACTTCGCGGTGTTCTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1534  GAAGATATTGAAGGTGAAGCGCTTGCAACTTTGGTTGTAAATAAACTTCGCGGTGTTCTT
              490       500       510       520       530       540

              550     
b8436  AATATTTCAGCAGTG
       :::::::::::::::
b1534  AATATTTCAGCAGTG
              550     

</pre>
<hr>
<A name=b1535>
<pre>
>><a onClick="window.open('getRecord.php?id=b1535',
                                'cpndb_record'); return false;" href="getRecord.php?id=b1535" target=_"blank">b1535</a> AF461537 Campylobacter jejuni Penner type strain  (555 nt)
 initn: 2775 init1: 2775 opt: 2775  Z-score: 92.0  bits: 26.8 E():   49
banded Smith-Waterman score: 2775; 100.0% identity (100.0% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b8436  GCAACGGTTTTAGCTCATGCAATTTTCAAAGAAGGTTTAAGAAATATCACAGCAGGTGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1535  GCAACGGTTTTAGCTCATGCAATTTTCAAAGAAGGTTTAAGAAATATCACAGCAGGTGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b8436  AATCCTATCGAGGTAAAACGCGGTATGGATAAAGCTTGCGAAGCTATAGTAGCAGAACTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1535  AATCCTATCGAGGTAAAACGCGGTATGGATAAAGCTTGCGAAGCTATAGTAGCAGAACTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b8436  AAAAAACTTTCTCGCGAAGTAAAAGATAAAAAAGAAATTGCACAAGTTGCTACAATCTCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1535  AAAAAACTTTCTCGCGAAGTAAAAGATAAAAAAGAAATTGCACAAGTTGCTACAATCTCA
              130       140       150       160       170       180

              190       200       210       220       230       240
b8436  GCCAACTCTGATGAAAAAATCGGAAATTTAATCGCTGATGCTATGGAAAAAGTGGGCAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1535  GCCAACTCTGATGAAAAAATCGGAAATTTAATCGCTGATGCTATGGAAAAAGTGGGCAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b8436  GATGGTGTTATCACTGTTGAGGAGGCAAAATCAATCAATGATGAATTAAATGTAGTTGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1535  GATGGTGTTATCACTGTTGAGGAGGCAAAATCAATCAATGATGAATTAAATGTAGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b8436  GGTATGCAATTTGACAGAGGTTATTTAAGCCCTTATTTTATCACTAATGCAGAAAAAATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1535  GGTATGCAATTTGACAGAGGTTATTTAAGCCCTTATTTTATCACTAATGCAGAAAAAATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b8436  ACAGTAGAGCTTTCAAGCCCTTATATCCTGCTTTTTGATAAAAAAATTACAAATTTAAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1535  ACAGTAGAGCTTTCAAGCCCTTATATCCTGCTTTTTGATAAAAAAATTACAAATTTAAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b8436  GATTTATTACCGGTTTTAGAACAAATTCAAAAAACAGGCAAACCACTTTTAATTATCGCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1535  GATTTATTACCGGTTTTAGAACAAATTCAAAAAACAGGCAAACCACTTTTAATTATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b8436  GAAGATATTGAAGGTGAAGCGCTTGCAACTTTGGTTGTAAATAAACTTCGCGGTGTTCTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1535  GAAGATATTGAAGGTGAAGCGCTTGCAACTTTGGTTGTAAATAAACTTCGCGGTGTTCTT
              490       500       510       520       530       540

              550     
b8436  AATATTTCAGCAGTG
       :::::::::::::::
b1535  AATATTTCAGCAGTG
              550     

</pre>
<hr>
<A name=b19950>
<pre>
>><a onClick="window.open('getRecord.php?id=b19950',
                                'cpndb_record'); return false;" href="getRecord.php?id=b19950" target=_"blank">b19950</a> JH376990 Campylobacter jejuni subsp. jejuni NW   (555 nt)
 initn: 2775 init1: 2775 opt: 2775  Z-score: 92.0  bits: 26.8 E():   49
banded Smith-Waterman score: 2775; 100.0% identity (100.0% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b8436  GCAACGGTTTTAGCTCATGCAATTTTCAAAGAAGGTTTAAGAAATATCACAGCAGGTGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19950 GCAACGGTTTTAGCTCATGCAATTTTCAAAGAAGGTTTAAGAAATATCACAGCAGGTGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b8436  AATCCTATCGAGGTAAAACGCGGTATGGATAAAGCTTGCGAAGCTATAGTAGCAGAACTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19950 AATCCTATCGAGGTAAAACGCGGTATGGATAAAGCTTGCGAAGCTATAGTAGCAGAACTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b8436  AAAAAACTTTCTCGCGAAGTAAAAGATAAAAAAGAAATTGCACAAGTTGCTACAATCTCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19950 AAAAAACTTTCTCGCGAAGTAAAAGATAAAAAAGAAATTGCACAAGTTGCTACAATCTCA
              130       140       150       160       170       180

              190       200       210       220       230       240
b8436  GCCAACTCTGATGAAAAAATCGGAAATTTAATCGCTGATGCTATGGAAAAAGTGGGCAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19950 GCCAACTCTGATGAAAAAATCGGAAATTTAATCGCTGATGCTATGGAAAAAGTGGGCAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b8436  GATGGTGTTATCACTGTTGAGGAGGCAAAATCAATCAATGATGAATTAAATGTAGTTGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19950 GATGGTGTTATCACTGTTGAGGAGGCAAAATCAATCAATGATGAATTAAATGTAGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b8436  GGTATGCAATTTGACAGAGGTTATTTAAGCCCTTATTTTATCACTAATGCAGAAAAAATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19950 GGTATGCAATTTGACAGAGGTTATTTAAGCCCTTATTTTATCACTAATGCAGAAAAAATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b8436  ACAGTAGAGCTTTCAAGCCCTTATATCCTGCTTTTTGATAAAAAAATTACAAATTTAAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19950 ACAGTAGAGCTTTCAAGCCCTTATATCCTGCTTTTTGATAAAAAAATTACAAATTTAAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b8436  GATTTATTACCGGTTTTAGAACAAATTCAAAAAACAGGCAAACCACTTTTAATTATCGCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19950 GATTTATTACCGGTTTTAGAACAAATTCAAAAAACAGGCAAACCACTTTTAATTATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b8436  GAAGATATTGAAGGTGAAGCGCTTGCAACTTTGGTTGTAAATAAACTTCGCGGTGTTCTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19950 GAAGATATTGAAGGTGAAGCGCTTGCAACTTTGGTTGTAAATAAACTTCGCGGTGTTCTT
              490       500       510       520       530       540

              550     
b8436  AATATTTCAGCAGTG
       :::::::::::::::
b19950 AATATTTCAGCAGTG
              550     

</pre>
<hr>
<A name=b1531>
<pre>
>><a onClick="window.open('getRecord.php?id=b1531',
                                'cpndb_record'); return false;" href="getRecord.php?id=b1531" target=_"blank">b1531</a> AF461533 Campylobacter jejuni Penner type strain  (555 nt)
 initn: 2766 init1: 2766 opt: 2766  Z-score: 91.8  bits: 26.8 E():   50
banded Smith-Waterman score: 2766; 99.8% identity (99.8% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b8436  GCAACGGTTTTAGCTCATGCAATTTTCAAAGAAGGTTTAAGAAATATCACAGCAGGTGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1531  GCAACGGTTTTAGCTCATGCAATTTTCAAAGAAGGTTTAAGAAATATCACAGCAGGTGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b8436  AATCCTATCGAGGTAAAACGCGGTATGGATAAAGCTTGCGAAGCTATAGTAGCAGAACTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1531  AATCCTATCGAGGTAAAACGCGGTATGGATAAAGCTTGCGAAGCTATAGTAGCAGAACTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b8436  AAAAAACTTTCTCGCGAAGTAAAAGATAAAAAAGAAATTGCACAAGTTGCTACAATCTCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1531  AAAAAACTTTCTCGCGAAGTAAAAGATAAAAAAGAAATTGCACAAGTTGCTACAATCTCA
              130       140       150       160       170       180

              190       200       210       220       230       240
b8436  GCCAACTCTGATGAAAAAATCGGAAATTTAATCGCTGATGCTATGGAAAAAGTGGGCAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1531  GCCAACTCTGATGAAAAAATCGGAAATTTAATCGCTGATGCTATGGAAAAAGTGGGCAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b8436  GATGGTGTTATCACTGTTGAGGAGGCAAAATCAATCAATGATGAATTAAATGTAGTTGAA
       :::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::
b1531  GATGGTGTTATCACTGTTGAAGAGGCAAAATCAATCAATGATGAATTAAATGTAGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b8436  GGTATGCAATTTGACAGAGGTTATTTAAGCCCTTATTTTATCACTAATGCAGAAAAAATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1531  GGTATGCAATTTGACAGAGGTTATTTAAGCCCTTATTTTATCACTAATGCAGAAAAAATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b8436  ACAGTAGAGCTTTCAAGCCCTTATATCCTGCTTTTTGATAAAAAAATTACAAATTTAAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1531  ACAGTAGAGCTTTCAAGCCCTTATATCCTGCTTTTTGATAAAAAAATTACAAATTTAAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b8436  GATTTATTACCGGTTTTAGAACAAATTCAAAAAACAGGCAAACCACTTTTAATTATCGCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1531  GATTTATTACCGGTTTTAGAACAAATTCAAAAAACAGGCAAACCACTTTTAATTATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b8436  GAAGATATTGAAGGTGAAGCGCTTGCAACTTTGGTTGTAAATAAACTTCGCGGTGTTCTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1531  GAAGATATTGAAGGTGAAGCGCTTGCAACTTTGGTTGTAAATAAACTTCGCGGTGTTCTT
              490       500       510       520       530       540

              550     
b8436  AATATTTCAGCAGTG
       :::::::::::::::
b1531  AATATTTCAGCAGTG
              550     

</pre>
<hr>
<A name=b27522>
<pre>
>><a onClick="window.open('getRecord.php?id=b27522',
                                'cpndb_record'); return false;" href="getRecord.php?id=b27522" target=_"blank">b27522</a> NZ_CAFV01000001 Campylobacter  jejuni  subsp. j  (555 nt)
 initn: 2766 init1: 2766 opt: 2766  Z-score: 91.8  bits: 26.8 E():   50
banded Smith-Waterman score: 2766; 99.8% identity (99.8% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b8436  GCAACGGTTTTAGCTCATGCAATTTTCAAAGAAGGTTTAAGAAATATCACAGCAGGTGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27522 GCAACGGTTTTAGCTCATGCAATTTTCAAAGAAGGTTTAAGAAATATCACAGCAGGTGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b8436  AATCCTATCGAGGTAAAACGCGGTATGGATAAAGCTTGCGAAGCTATAGTAGCAGAACTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27522 AATCCTATCGAGGTAAAACGCGGTATGGATAAAGCTTGCGAAGCTATAGTAGCAGAACTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b8436  AAAAAACTTTCTCGCGAAGTAAAAGATAAAAAAGAAATTGCACAAGTTGCTACAATCTCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27522 AAAAAACTTTCTCGCGAAGTAAAAGATAAAAAAGAAATTGCACAAGTTGCTACAATCTCA
              130       140       150       160       170       180

              190       200       210       220       230       240
b8436  GCCAACTCTGATGAAAAAATCGGAAATTTAATCGCTGATGCTATGGAAAAAGTGGGCAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27522 GCCAACTCTGATGAAAAAATCGGAAATTTAATCGCTGATGCTATGGAAAAAGTGGGCAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b8436  GATGGTGTTATCACTGTTGAGGAGGCAAAATCAATCAATGATGAATTAAATGTAGTTGAA
       :::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::
b27522 GATGGTGTTATCACTGTTGAAGAGGCAAAATCAATCAATGATGAATTAAATGTAGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b8436  GGTATGCAATTTGACAGAGGTTATTTAAGCCCTTATTTTATCACTAATGCAGAAAAAATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27522 GGTATGCAATTTGACAGAGGTTATTTAAGCCCTTATTTTATCACTAATGCAGAAAAAATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b8436  ACAGTAGAGCTTTCAAGCCCTTATATCCTGCTTTTTGATAAAAAAATTACAAATTTAAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27522 ACAGTAGAGCTTTCAAGCCCTTATATCCTGCTTTTTGATAAAAAAATTACAAATTTAAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b8436  GATTTATTACCGGTTTTAGAACAAATTCAAAAAACAGGCAAACCACTTTTAATTATCGCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27522 GATTTATTACCGGTTTTAGAACAAATTCAAAAAACAGGCAAACCACTTTTAATTATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b8436  GAAGATATTGAAGGTGAAGCGCTTGCAACTTTGGTTGTAAATAAACTTCGCGGTGTTCTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27522 GAAGATATTGAAGGTGAAGCGCTTGCAACTTTGGTTGTAAATAAACTTCGCGGTGTTCTT
              490       500       510       520       530       540

              550     
b8436  AATATTTCAGCAGTG
       :::::::::::::::
b27522 AATATTTCAGCAGTG
              550     

</pre>
<hr>
<A name=b1533>
<pre>
>><a onClick="window.open('getRecord.php?id=b1533',
                                'cpndb_record'); return false;" href="getRecord.php?id=b1533" target=_"blank">b1533</a> AF461535 Campylobacter jejuni Penner type strain  (555 nt)
 initn: 2766 init1: 2766 opt: 2766  Z-score: 91.8  bits: 26.8 E():   50
banded Smith-Waterman score: 2766; 99.8% identity (99.8% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b8436  GCAACGGTTTTAGCTCATGCAATTTTCAAAGAAGGTTTAAGAAATATCACAGCAGGTGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1533  GCAACGGTTTTAGCTCATGCAATTTTCAAAGAAGGTTTAAGAAATATCACAGCAGGTGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b8436  AATCCTATCGAGGTAAAACGCGGTATGGATAAAGCTTGCGAAGCTATAGTAGCAGAACTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1533  AATCCTATCGAGGTAAAACGCGGTATGGATAAAGCTTGCGAAGCTATAGTAGCAGAACTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b8436  AAAAAACTTTCTCGCGAAGTAAAAGATAAAAAAGAAATTGCACAAGTTGCTACAATCTCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1533  AAAAAACTTTCTCGCGAAGTAAAAGATAAAAAAGAAATTGCACAAGTTGCTACAATCTCA
              130       140       150       160       170       180

              190       200       210       220       230       240
b8436  GCCAACTCTGATGAAAAAATCGGAAATTTAATCGCTGATGCTATGGAAAAAGTGGGCAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1533  GCCAACTCTGATGAAAAAATCGGAAATTTAATCGCTGATGCTATGGAAAAAGTGGGCAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b8436  GATGGTGTTATCACTGTTGAGGAGGCAAAATCAATCAATGATGAATTAAATGTAGTTGAA
       :::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::
b1533  GATGGTGTTATCACTGTTGAAGAGGCAAAATCAATCAATGATGAATTAAATGTAGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b8436  GGTATGCAATTTGACAGAGGTTATTTAAGCCCTTATTTTATCACTAATGCAGAAAAAATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1533  GGTATGCAATTTGACAGAGGTTATTTAAGCCCTTATTTTATCACTAATGCAGAAAAAATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b8436  ACAGTAGAGCTTTCAAGCCCTTATATCCTGCTTTTTGATAAAAAAATTACAAATTTAAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1533  ACAGTAGAGCTTTCAAGCCCTTATATCCTGCTTTTTGATAAAAAAATTACAAATTTAAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b8436  GATTTATTACCGGTTTTAGAACAAATTCAAAAAACAGGCAAACCACTTTTAATTATCGCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1533  GATTTATTACCGGTTTTAGAACAAATTCAAAAAACAGGCAAACCACTTTTAATTATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b8436  GAAGATATTGAAGGTGAAGCGCTTGCAACTTTGGTTGTAAATAAACTTCGCGGTGTTCTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1533  GAAGATATTGAAGGTGAAGCGCTTGCAACTTTGGTTGTAAATAAACTTCGCGGTGTTCTT
              490       500       510       520       530       540

              550     
b8436  AATATTTCAGCAGTG
       :::::::::::::::
b1533  AATATTTCAGCAGTG
              550     

</pre>
<hr>
<A name=b27521>
<pre>
>><a onClick="window.open('getRecord.php?id=b27521',
                                'cpndb_record'); return false;" href="getRecord.php?id=b27521" target=_"blank">b27521</a> NZ_CAFU01000006 Campylobacter  jejuni  subsp. j  (555 nt)
 initn: 2766 init1: 2766 opt: 2766  Z-score: 91.8  bits: 26.8 E():   50
banded Smith-Waterman score: 2766; 99.8% identity (99.8% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b8436  GCAACGGTTTTAGCTCATGCAATTTTCAAAGAAGGTTTAAGAAATATCACAGCAGGTGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27521 GCAACGGTTTTAGCTCATGCAATTTTCAAAGAAGGTTTAAGAAATATCACAGCAGGTGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b8436  AATCCTATCGAGGTAAAACGCGGTATGGATAAAGCTTGCGAAGCTATAGTAGCAGAACTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27521 AATCCTATCGAGGTAAAACGCGGTATGGATAAAGCTTGCGAAGCTATAGTAGCAGAACTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b8436  AAAAAACTTTCTCGCGAAGTAAAAGATAAAAAAGAAATTGCACAAGTTGCTACAATCTCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27521 AAAAAACTTTCTCGCGAAGTAAAAGATAAAAAAGAAATTGCACAAGTTGCTACAATCTCA
              130       140       150       160       170       180

              190       200       210       220       230       240
b8436  GCCAACTCTGATGAAAAAATCGGAAATTTAATCGCTGATGCTATGGAAAAAGTGGGCAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27521 GCCAACTCTGATGAAAAAATCGGAAATTTAATCGCTGATGCTATGGAAAAAGTGGGCAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b8436  GATGGTGTTATCACTGTTGAGGAGGCAAAATCAATCAATGATGAATTAAATGTAGTTGAA
       :::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::
b27521 GATGGTGTTATCACTGTTGAAGAGGCAAAATCAATCAATGATGAATTAAATGTAGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b8436  GGTATGCAATTTGACAGAGGTTATTTAAGCCCTTATTTTATCACTAATGCAGAAAAAATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27521 GGTATGCAATTTGACAGAGGTTATTTAAGCCCTTATTTTATCACTAATGCAGAAAAAATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b8436  ACAGTAGAGCTTTCAAGCCCTTATATCCTGCTTTTTGATAAAAAAATTACAAATTTAAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27521 ACAGTAGAGCTTTCAAGCCCTTATATCCTGCTTTTTGATAAAAAAATTACAAATTTAAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b8436  GATTTATTACCGGTTTTAGAACAAATTCAAAAAACAGGCAAACCACTTTTAATTATCGCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27521 GATTTATTACCGGTTTTAGAACAAATTCAAAAAACAGGCAAACCACTTTTAATTATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b8436  GAAGATATTGAAGGTGAAGCGCTTGCAACTTTGGTTGTAAATAAACTTCGCGGTGTTCTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27521 GAAGATATTGAAGGTGAAGCGCTTGCAACTTTGGTTGTAAATAAACTTCGCGGTGTTCTT
              490       500       510       520       530       540

              550     
b8436  AATATTTCAGCAGTG
       :::::::::::::::
b27521 AATATTTCAGCAGTG
              550     

</pre>
<hr>
<A name=b27519>
<pre>
>><a onClick="window.open('getRecord.php?id=b27519',
                                'cpndb_record'); return false;" href="getRecord.php?id=b27519" target=_"blank">b27519</a> NZ_CAFS01000008 Campylobacter  jejuni  subsp. j  (555 nt)
 initn: 2766 init1: 2766 opt: 2766  Z-score: 91.8  bits: 26.8 E():   50
banded Smith-Waterman score: 2766; 99.8% identity (99.8% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b8436  GCAACGGTTTTAGCTCATGCAATTTTCAAAGAAGGTTTAAGAAATATCACAGCAGGTGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27519 GCAACGGTTTTAGCTCATGCAATTTTCAAAGAAGGTTTAAGAAATATCACAGCAGGTGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b8436  AATCCTATCGAGGTAAAACGCGGTATGGATAAAGCTTGCGAAGCTATAGTAGCAGAACTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27519 AATCCTATCGAGGTAAAACGCGGTATGGATAAAGCTTGCGAAGCTATAGTAGCAGAACTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b8436  AAAAAACTTTCTCGCGAAGTAAAAGATAAAAAAGAAATTGCACAAGTTGCTACAATCTCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27519 AAAAAACTTTCTCGCGAAGTAAAAGATAAAAAAGAAATTGCACAAGTTGCTACAATCTCA
              130       140       150       160       170       180

              190       200       210       220       230       240
b8436  GCCAACTCTGATGAAAAAATCGGAAATTTAATCGCTGATGCTATGGAAAAAGTGGGCAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27519 GCCAACTCTGATGAAAAAATCGGAAATTTAATCGCTGATGCTATGGAAAAAGTGGGCAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b8436  GATGGTGTTATCACTGTTGAGGAGGCAAAATCAATCAATGATGAATTAAATGTAGTTGAA
       :::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::
b27519 GATGGTGTTATCACTGTTGAAGAGGCAAAATCAATCAATGATGAATTAAATGTAGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b8436  GGTATGCAATTTGACAGAGGTTATTTAAGCCCTTATTTTATCACTAATGCAGAAAAAATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27519 GGTATGCAATTTGACAGAGGTTATTTAAGCCCTTATTTTATCACTAATGCAGAAAAAATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b8436  ACAGTAGAGCTTTCAAGCCCTTATATCCTGCTTTTTGATAAAAAAATTACAAATTTAAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27519 ACAGTAGAGCTTTCAAGCCCTTATATCCTGCTTTTTGATAAAAAAATTACAAATTTAAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b8436  GATTTATTACCGGTTTTAGAACAAATTCAAAAAACAGGCAAACCACTTTTAATTATCGCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27519 GATTTATTACCGGTTTTAGAACAAATTCAAAAAACAGGCAAACCACTTTTAATTATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b8436  GAAGATATTGAAGGTGAAGCGCTTGCAACTTTGGTTGTAAATAAACTTCGCGGTGTTCTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27519 GAAGATATTGAAGGTGAAGCGCTTGCAACTTTGGTTGTAAATAAACTTCGCGGTGTTCTT
              490       500       510       520       530       540

              550     
b8436  AATATTTCAGCAGTG
       :::::::::::::::
b27519 AATATTTCAGCAGTG
              550     

</pre>
<hr>
<A name=b27520>
<pre>
>><a onClick="window.open('getRecord.php?id=b27520',
                                'cpndb_record'); return false;" href="getRecord.php?id=b27520" target=_"blank">b27520</a> NZ_CAFT01000019 Campylobacter  jejuni  subsp. j  (555 nt)
 initn: 2766 init1: 2766 opt: 2766  Z-score: 91.8  bits: 26.8 E():   50
banded Smith-Waterman score: 2766; 99.8% identity (99.8% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b8436  GCAACGGTTTTAGCTCATGCAATTTTCAAAGAAGGTTTAAGAAATATCACAGCAGGTGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27520 GCAACGGTTTTAGCTCATGCAATTTTCAAAGAAGGTTTAAGAAATATCACAGCAGGTGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b8436  AATCCTATCGAGGTAAAACGCGGTATGGATAAAGCTTGCGAAGCTATAGTAGCAGAACTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27520 AATCCTATCGAGGTAAAACGCGGTATGGATAAAGCTTGCGAAGCTATAGTAGCAGAACTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b8436  AAAAAACTTTCTCGCGAAGTAAAAGATAAAAAAGAAATTGCACAAGTTGCTACAATCTCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27520 AAAAAACTTTCTCGCGAAGTAAAAGATAAAAAAGAAATTGCACAAGTTGCTACAATCTCA
              130       140       150       160       170       180

              190       200       210       220       230       240
b8436  GCCAACTCTGATGAAAAAATCGGAAATTTAATCGCTGATGCTATGGAAAAAGTGGGCAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27520 GCCAACTCTGATGAAAAAATCGGAAATTTAATCGCTGATGCTATGGAAAAAGTGGGCAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b8436  GATGGTGTTATCACTGTTGAGGAGGCAAAATCAATCAATGATGAATTAAATGTAGTTGAA
       :::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::
b27520 GATGGTGTTATCACTGTTGAAGAGGCAAAATCAATCAATGATGAATTAAATGTAGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b8436  GGTATGCAATTTGACAGAGGTTATTTAAGCCCTTATTTTATCACTAATGCAGAAAAAATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27520 GGTATGCAATTTGACAGAGGTTATTTAAGCCCTTATTTTATCACTAATGCAGAAAAAATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b8436  ACAGTAGAGCTTTCAAGCCCTTATATCCTGCTTTTTGATAAAAAAATTACAAATTTAAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27520 ACAGTAGAGCTTTCAAGCCCTTATATCCTGCTTTTTGATAAAAAAATTACAAATTTAAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b8436  GATTTATTACCGGTTTTAGAACAAATTCAAAAAACAGGCAAACCACTTTTAATTATCGCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27520 GATTTATTACCGGTTTTAGAACAAATTCAAAAAACAGGCAAACCACTTTTAATTATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b8436  GAAGATATTGAAGGTGAAGCGCTTGCAACTTTGGTTGTAAATAAACTTCGCGGTGTTCTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27520 GAAGATATTGAAGGTGAAGCGCTTGCAACTTTGGTTGTAAATAAACTTCGCGGTGTTCTT
              490       500       510       520       530       540

              550     
b8436  AATATTTCAGCAGTG
       :::::::::::::::
b27520 AATATTTCAGCAGTG
              550     

</pre>
<hr>
<A name=b1274>
<pre>
>><a onClick="window.open('getRecord.php?id=b1274',
                                'cpndb_record'); return false;" href="getRecord.php?id=b1274" target=_"blank">b1274</a> NC_002163 Campylobacter jejuni NCTC11168          (555 nt)
 initn: 2766 init1: 2766 opt: 2766  Z-score: 91.8  bits: 26.8 E():   50
banded Smith-Waterman score: 2766; 99.8% identity (99.8% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b8436  GCAACGGTTTTAGCTCATGCAATTTTCAAAGAAGGTTTAAGAAATATCACAGCAGGTGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1274  GCAACGGTTTTAGCTCATGCAATTTTCAAAGAAGGTTTAAGAAATATCACAGCAGGTGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b8436  AATCCTATCGAGGTAAAACGCGGTATGGATAAAGCTTGCGAAGCTATAGTAGCAGAACTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1274  AATCCTATCGAGGTAAAACGCGGTATGGATAAAGCTTGCGAAGCTATAGTAGCAGAACTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b8436  AAAAAACTTTCTCGCGAAGTAAAAGATAAAAAAGAAATTGCACAAGTTGCTACAATCTCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1274  AAAAAACTTTCTCGCGAAGTAAAAGATAAAAAAGAAATTGCACAAGTTGCTACAATCTCA
              130       140       150       160       170       180

              190       200       210       220       230       240
b8436  GCCAACTCTGATGAAAAAATCGGAAATTTAATCGCTGATGCTATGGAAAAAGTGGGCAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1274  GCCAACTCTGATGAAAAAATCGGAAATTTAATCGCTGATGCTATGGAAAAAGTGGGCAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b8436  GATGGTGTTATCACTGTTGAGGAGGCAAAATCAATCAATGATGAATTAAATGTAGTTGAA
       :::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::
b1274  GATGGTGTTATCACTGTTGAAGAGGCAAAATCAATCAATGATGAATTAAATGTAGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b8436  GGTATGCAATTTGACAGAGGTTATTTAAGCCCTTATTTTATCACTAATGCAGAAAAAATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1274  GGTATGCAATTTGACAGAGGTTATTTAAGCCCTTATTTTATCACTAATGCAGAAAAAATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b8436  ACAGTAGAGCTTTCAAGCCCTTATATCCTGCTTTTTGATAAAAAAATTACAAATTTAAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1274  ACAGTAGAGCTTTCAAGCCCTTATATCCTGCTTTTTGATAAAAAAATTACAAATTTAAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b8436  GATTTATTACCGGTTTTAGAACAAATTCAAAAAACAGGCAAACCACTTTTAATTATCGCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1274  GATTTATTACCGGTTTTAGAACAAATTCAAAAAACAGGCAAACCACTTTTAATTATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b8436  GAAGATATTGAAGGTGAAGCGCTTGCAACTTTGGTTGTAAATAAACTTCGCGGTGTTCTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1274  GAAGATATTGAAGGTGAAGCGCTTGCAACTTTGGTTGTAAATAAACTTCGCGGTGTTCTT
              490       500       510       520       530       540

              550     
b8436  AATATTTCAGCAGTG
       :::::::::::::::
b1274  AATATTTCAGCAGTG
              550     

</pre>
<hr>
<A name=b1252>
<pre>
>><a onClick="window.open('getRecord.php?id=b1252',
                                'cpndb_record'); return false;" href="getRecord.php?id=b1252" target=_"blank">b1252</a> AY044099 Campylobacter jejuni NCTC11168           (555 nt)
 initn: 2766 init1: 2766 opt: 2766  Z-score: 91.8  bits: 26.8 E():   50
banded Smith-Waterman score: 2766; 99.8% identity (99.8% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b8436  GCAACGGTTTTAGCTCATGCAATTTTCAAAGAAGGTTTAAGAAATATCACAGCAGGTGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1252  GCAACGGTTTTAGCTCATGCAATTTTCAAAGAAGGTTTAAGAAATATCACAGCAGGTGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b8436  AATCCTATCGAGGTAAAACGCGGTATGGATAAAGCTTGCGAAGCTATAGTAGCAGAACTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1252  AATCCTATCGAGGTAAAACGCGGTATGGATAAAGCTTGCGAAGCTATAGTAGCAGAACTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b8436  AAAAAACTTTCTCGCGAAGTAAAAGATAAAAAAGAAATTGCACAAGTTGCTACAATCTCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1252  AAAAAACTTTCTCGCGAAGTAAAAGATAAAAAAGAAATTGCACAAGTTGCTACAATCTCA
              130       140       150       160       170       180

              190       200       210       220       230       240
b8436  GCCAACTCTGATGAAAAAATCGGAAATTTAATCGCTGATGCTATGGAAAAAGTGGGCAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1252  GCCAACTCTGATGAAAAAATCGGAAATTTAATCGCTGATGCTATGGAAAAAGTGGGCAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b8436  GATGGTGTTATCACTGTTGAGGAGGCAAAATCAATCAATGATGAATTAAATGTAGTTGAA
       :::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::
b1252  GATGGTGTTATCACTGTTGAAGAGGCAAAATCAATCAATGATGAATTAAATGTAGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b8436  GGTATGCAATTTGACAGAGGTTATTTAAGCCCTTATTTTATCACTAATGCAGAAAAAATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1252  GGTATGCAATTTGACAGAGGTTATTTAAGCCCTTATTTTATCACTAATGCAGAAAAAATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b8436  ACAGTAGAGCTTTCAAGCCCTTATATCCTGCTTTTTGATAAAAAAATTACAAATTTAAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1252  ACAGTAGAGCTTTCAAGCCCTTATATCCTGCTTTTTGATAAAAAAATTACAAATTTAAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b8436  GATTTATTACCGGTTTTAGAACAAATTCAAAAAACAGGCAAACCACTTTTAATTATCGCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1252  GATTTATTACCGGTTTTAGAACAAATTCAAAAAACAGGCAAACCACTTTTAATTATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b8436  GAAGATATTGAAGGTGAAGCGCTTGCAACTTTGGTTGTAAATAAACTTCGCGGTGTTCTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1252  GAAGATATTGAAGGTGAAGCGCTTGCAACTTTGGTTGTAAATAAACTTCGCGGTGTTCTT
              490       500       510       520       530       540

              550     
b8436  AATATTTCAGCAGTG
       :::::::::::::::
b1252  AATATTTCAGCAGTG
              550     

</pre>
<hr>
<A name=b7778>
<pre>
>><a onClick="window.open('getRecord.php?id=b7778',
                                'cpndb_record'); return false;" href="getRecord.php?id=b7778" target=_"blank">b7778</a> AY789009 Campylobacter jejuni subsp. jejuni NCTC  (555 nt)
 initn: 2766 init1: 2766 opt: 2766  Z-score: 91.8  bits: 26.8 E():   50
banded Smith-Waterman score: 2766; 99.8% identity (99.8% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b8436  GCAACGGTTTTAGCTCATGCAATTTTCAAAGAAGGTTTAAGAAATATCACAGCAGGTGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7778  GCAACGGTTTTAGCTCATGCAATTTTCAAAGAAGGTTTAAGAAATATCACAGCAGGTGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b8436  AATCCTATCGAGGTAAAACGCGGTATGGATAAAGCTTGCGAAGCTATAGTAGCAGAACTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7778  AATCCTATCGAGGTAAAACGCGGTATGGATAAAGCTTGCGAAGCTATAGTAGCAGAACTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b8436  AAAAAACTTTCTCGCGAAGTAAAAGATAAAAAAGAAATTGCACAAGTTGCTACAATCTCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7778  AAAAAACTTTCTCGCGAAGTAAAAGATAAAAAAGAAATTGCACAAGTTGCTACAATCTCA
              130       140       150       160       170       180

              190       200       210       220       230       240
b8436  GCCAACTCTGATGAAAAAATCGGAAATTTAATCGCTGATGCTATGGAAAAAGTGGGCAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7778  GCCAACTCTGATGAAAAAATCGGAAATTTAATCGCTGATGCTATGGAAAAAGTGGGCAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b8436  GATGGTGTTATCACTGTTGAGGAGGCAAAATCAATCAATGATGAATTAAATGTAGTTGAA
       :::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::
b7778  GATGGTGTTATCACTGTTGAAGAGGCAAAATCAATCAATGATGAATTAAATGTAGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b8436  GGTATGCAATTTGACAGAGGTTATTTAAGCCCTTATTTTATCACTAATGCAGAAAAAATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7778  GGTATGCAATTTGACAGAGGTTATTTAAGCCCTTATTTTATCACTAATGCAGAAAAAATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b8436  ACAGTAGAGCTTTCAAGCCCTTATATCCTGCTTTTTGATAAAAAAATTACAAATTTAAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7778  ACAGTAGAGCTTTCAAGCCCTTATATCCTGCTTTTTGATAAAAAAATTACAAATTTAAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b8436  GATTTATTACCGGTTTTAGAACAAATTCAAAAAACAGGCAAACCACTTTTAATTATCGCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7778  GATTTATTACCGGTTTTAGAACAAATTCAAAAAACAGGCAAACCACTTTTAATTATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b8436  GAAGATATTGAAGGTGAAGCGCTTGCAACTTTGGTTGTAAATAAACTTCGCGGTGTTCTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7778  GAAGATATTGAAGGTGAAGCGCTTGCAACTTTGGTTGTAAATAAACTTCGCGGTGTTCTT
              490       500       510       520       530       540

              550     
b8436  AATATTTCAGCAGTG
       :::::::::::::::
b7778  AATATTTCAGCAGTG
              550     

</pre>
<hr>
<A name=b27518>
<pre>
>><a onClick="window.open('getRecord.php?id=b27518',
                                'cpndb_record'); return false;" href="getRecord.php?id=b27518" target=_"blank">b27518</a> NZ_CAFR01000064 Campylobacter  jejuni  subsp. j  (555 nt)
 initn: 2766 init1: 2766 opt: 2766  Z-score: 91.8  bits: 26.8 E():   50
banded Smith-Waterman score: 2766; 99.8% identity (99.8% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b8436  GCAACGGTTTTAGCTCATGCAATTTTCAAAGAAGGTTTAAGAAATATCACAGCAGGTGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27518 GCAACGGTTTTAGCTCATGCAATTTTCAAAGAAGGTTTAAGAAATATCACAGCAGGTGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b8436  AATCCTATCGAGGTAAAACGCGGTATGGATAAAGCTTGCGAAGCTATAGTAGCAGAACTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27518 AATCCTATCGAGGTAAAACGCGGTATGGATAAAGCTTGCGAAGCTATAGTAGCAGAACTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b8436  AAAAAACTTTCTCGCGAAGTAAAAGATAAAAAAGAAATTGCACAAGTTGCTACAATCTCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27518 AAAAAACTTTCTCGCGAAGTAAAAGATAAAAAAGAAATTGCACAAGTTGCTACAATCTCA
              130       140       150       160       170       180

              190       200       210       220       230       240
b8436  GCCAACTCTGATGAAAAAATCGGAAATTTAATCGCTGATGCTATGGAAAAAGTGGGCAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27518 GCCAACTCTGATGAAAAAATCGGAAATTTAATCGCTGATGCTATGGAAAAAGTGGGCAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b8436  GATGGTGTTATCACTGTTGAGGAGGCAAAATCAATCAATGATGAATTAAATGTAGTTGAA
       :::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::
b27518 GATGGTGTTATCACTGTTGAAGAGGCAAAATCAATCAATGATGAATTAAATGTAGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b8436  GGTATGCAATTTGACAGAGGTTATTTAAGCCCTTATTTTATCACTAATGCAGAAAAAATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27518 GGTATGCAATTTGACAGAGGTTATTTAAGCCCTTATTTTATCACTAATGCAGAAAAAATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b8436  ACAGTAGAGCTTTCAAGCCCTTATATCCTGCTTTTTGATAAAAAAATTACAAATTTAAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27518 ACAGTAGAGCTTTCAAGCCCTTATATCCTGCTTTTTGATAAAAAAATTACAAATTTAAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b8436  GATTTATTACCGGTTTTAGAACAAATTCAAAAAACAGGCAAACCACTTTTAATTATCGCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27518 GATTTATTACCGGTTTTAGAACAAATTCAAAAAACAGGCAAACCACTTTTAATTATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b8436  GAAGATATTGAAGGTGAAGCGCTTGCAACTTTGGTTGTAAATAAACTTCGCGGTGTTCTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27518 GAAGATATTGAAGGTGAAGCGCTTGCAACTTTGGTTGTAAATAAACTTCGCGGTGTTCTT
              490       500       510       520       530       540

              550     
b8436  AATATTTCAGCAGTG
       :::::::::::::::
b27518 AATATTTCAGCAGTG
              550     

</pre>
<hr>
<A name=b21505>
<pre>
>><a onClick="window.open('getRecord.php?id=b21505',
                                'cpndb_record'); return false;" href="getRecord.php?id=b21505" target=_"blank">b21505</a> HE978252 Campylobacter jejuni subsp. jejuni  NC  (555 nt)
 initn: 2766 init1: 2766 opt: 2766  Z-score: 91.8  bits: 26.8 E():   50
banded Smith-Waterman score: 2766; 99.8% identity (99.8% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b8436  GCAACGGTTTTAGCTCATGCAATTTTCAAAGAAGGTTTAAGAAATATCACAGCAGGTGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21505 GCAACGGTTTTAGCTCATGCAATTTTCAAAGAAGGTTTAAGAAATATCACAGCAGGTGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b8436  AATCCTATCGAGGTAAAACGCGGTATGGATAAAGCTTGCGAAGCTATAGTAGCAGAACTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21505 AATCCTATCGAGGTAAAACGCGGTATGGATAAAGCTTGCGAAGCTATAGTAGCAGAACTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b8436  AAAAAACTTTCTCGCGAAGTAAAAGATAAAAAAGAAATTGCACAAGTTGCTACAATCTCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21505 AAAAAACTTTCTCGCGAAGTAAAAGATAAAAAAGAAATTGCACAAGTTGCTACAATCTCA
              130       140       150       160       170       180

              190       200       210       220       230       240
b8436  GCCAACTCTGATGAAAAAATCGGAAATTTAATCGCTGATGCTATGGAAAAAGTGGGCAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21505 GCCAACTCTGATGAAAAAATCGGAAATTTAATCGCTGATGCTATGGAAAAAGTGGGCAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b8436  GATGGTGTTATCACTGTTGAGGAGGCAAAATCAATCAATGATGAATTAAATGTAGTTGAA
       :::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::
b21505 GATGGTGTTATCACTGTTGAAGAGGCAAAATCAATCAATGATGAATTAAATGTAGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b8436  GGTATGCAATTTGACAGAGGTTATTTAAGCCCTTATTTTATCACTAATGCAGAAAAAATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21505 GGTATGCAATTTGACAGAGGTTATTTAAGCCCTTATTTTATCACTAATGCAGAAAAAATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b8436  ACAGTAGAGCTTTCAAGCCCTTATATCCTGCTTTTTGATAAAAAAATTACAAATTTAAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21505 ACAGTAGAGCTTTCAAGCCCTTATATCCTGCTTTTTGATAAAAAAATTACAAATTTAAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b8436  GATTTATTACCGGTTTTAGAACAAATTCAAAAAACAGGCAAACCACTTTTAATTATCGCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21505 GATTTATTACCGGTTTTAGAACAAATTCAAAAAACAGGCAAACCACTTTTAATTATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b8436  GAAGATATTGAAGGTGAAGCGCTTGCAACTTTGGTTGTAAATAAACTTCGCGGTGTTCTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21505 GAAGATATTGAAGGTGAAGCGCTTGCAACTTTGGTTGTAAATAAACTTCGCGGTGTTCTT
              490       500       510       520       530       540

              550     
b8436  AATATTTCAGCAGTG
       :::::::::::::::
b21505 AATATTTCAGCAGTG
              550     

</pre>
<hr>
<A name=b1542>
<pre>
>><a onClick="window.open('getRecord.php?id=b1542',
                                'cpndb_record'); return false;" href="getRecord.php?id=b1542" target=_"blank">b1542</a> af461064 Campylobacter jejuni serotype O:1 ATCC   (555 nt)
 initn: 2766 init1: 2766 opt: 2766  Z-score: 91.8  bits: 26.8 E():   50
banded Smith-Waterman score: 2766; 99.8% identity (99.8% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b8436  GCAACGGTTTTAGCTCATGCAATTTTCAAAGAAGGTTTAAGAAATATCACAGCAGGTGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1542  GCAACGGTTTTAGCTCATGCAATTTTCAAAGAAGGTTTAAGAAATATCACAGCAGGTGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b8436  AATCCTATCGAGGTAAAACGCGGTATGGATAAAGCTTGCGAAGCTATAGTAGCAGAACTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1542  AATCCTATCGAGGTAAAACGCGGTATGGATAAAGCTTGCGAAGCTATAGTAGCAGAACTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b8436  AAAAAACTTTCTCGCGAAGTAAAAGATAAAAAAGAAATTGCACAAGTTGCTACAATCTCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1542  AAAAAACTTTCTCGCGAAGTAAAAGATAAAAAAGAAATTGCACAAGTTGCTACAATCTCA
              130       140       150       160       170       180

              190       200       210       220       230       240
b8436  GCCAACTCTGATGAAAAAATCGGAAATTTAATCGCTGATGCTATGGAAAAAGTGGGCAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1542  GCCAACTCTGATGAAAAAATCGGAAATTTAATCGCTGATGCTATGGAAAAAGTGGGCAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b8436  GATGGTGTTATCACTGTTGAGGAGGCAAAATCAATCAATGATGAATTAAATGTAGTTGAA
       :::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::
b1542  GATGGTGTTATCACTGTTGAAGAGGCAAAATCAATCAATGATGAATTAAATGTAGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b8436  GGTATGCAATTTGACAGAGGTTATTTAAGCCCTTATTTTATCACTAATGCAGAAAAAATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1542  GGTATGCAATTTGACAGAGGTTATTTAAGCCCTTATTTTATCACTAATGCAGAAAAAATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b8436  ACAGTAGAGCTTTCAAGCCCTTATATCCTGCTTTTTGATAAAAAAATTACAAATTTAAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1542  ACAGTAGAGCTTTCAAGCCCTTATATCCTGCTTTTTGATAAAAAAATTACAAATTTAAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b8436  GATTTATTACCGGTTTTAGAACAAATTCAAAAAACAGGCAAACCACTTTTAATTATCGCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1542  GATTTATTACCGGTTTTAGAACAAATTCAAAAAACAGGCAAACCACTTTTAATTATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b8436  GAAGATATTGAAGGTGAAGCGCTTGCAACTTTGGTTGTAAATAAACTTCGCGGTGTTCTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1542  GAAGATATTGAAGGTGAAGCGCTTGCAACTTTGGTTGTAAATAAACTTCGCGGTGTTCTT
              490       500       510       520       530       540

              550     
b8436  AATATTTCAGCAGTG
       :::::::::::::::
b1542  AATATTTCAGCAGTG
              550     

</pre>
<hr>
<A name=b19949>
<pre>
>><a onClick="window.open('getRecord.php?id=b19949',
                                'cpndb_record'); return false;" href="getRecord.php?id=b19949" target=_"blank">b19949</a> JH377088 Campylobacter jejuni subsp. jejuni D26  (555 nt)
 initn: 2766 init1: 2766 opt: 2766  Z-score: 91.8  bits: 26.8 E():   50
banded Smith-Waterman score: 2766; 99.8% identity (99.8% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b8436  GCAACGGTTTTAGCTCATGCAATTTTCAAAGAAGGTTTAAGAAATATCACAGCAGGTGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19949 GCAACGGTTTTAGCTCATGCAATTTTCAAAGAAGGTTTAAGAAATATCACAGCAGGTGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b8436  AATCCTATCGAGGTAAAACGCGGTATGGATAAAGCTTGCGAAGCTATAGTAGCAGAACTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19949 AATCCTATCGAGGTAAAACGCGGTATGGATAAAGCTTGCGAAGCTATAGTAGCAGAACTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b8436  AAAAAACTTTCTCGCGAAGTAAAAGATAAAAAAGAAATTGCACAAGTTGCTACAATCTCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19949 AAAAAACTTTCTCGCGAAGTAAAAGATAAAAAAGAAATTGCACAAGTTGCTACAATCTCA
              130       140       150       160       170       180

              190       200       210       220       230       240
b8436  GCCAACTCTGATGAAAAAATCGGAAATTTAATCGCTGATGCTATGGAAAAAGTGGGCAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19949 GCCAACTCTGATGAAAAAATCGGAAATTTAATCGCTGATGCTATGGAAAAAGTGGGCAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b8436  GATGGTGTTATCACTGTTGAGGAGGCAAAATCAATCAATGATGAATTAAATGTAGTTGAA
       :::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::
b19949 GATGGTGTTATCACTGTTGAAGAGGCAAAATCAATCAATGATGAATTAAATGTAGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b8436  GGTATGCAATTTGACAGAGGTTATTTAAGCCCTTATTTTATCACTAATGCAGAAAAAATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19949 GGTATGCAATTTGACAGAGGTTATTTAAGCCCTTATTTTATCACTAATGCAGAAAAAATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b8436  ACAGTAGAGCTTTCAAGCCCTTATATCCTGCTTTTTGATAAAAAAATTACAAATTTAAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19949 ACAGTAGAGCTTTCAAGCCCTTATATCCTGCTTTTTGATAAAAAAATTACAAATTTAAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b8436  GATTTATTACCGGTTTTAGAACAAATTCAAAAAACAGGCAAACCACTTTTAATTATCGCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19949 GATTTATTACCGGTTTTAGAACAAATTCAAAAAACAGGCAAACCACTTTTAATTATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b8436  GAAGATATTGAAGGTGAAGCGCTTGCAACTTTGGTTGTAAATAAACTTCGCGGTGTTCTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19949 GAAGATATTGAAGGTGAAGCGCTTGCAACTTTGGTTGTAAATAAACTTCGCGGTGTTCTT
              490       500       510       520       530       540

              550     
b8436  AATATTTCAGCAGTG
       :::::::::::::::
b19949 AATATTTCAGCAGTG
              550     

</pre>
<hr>
<A name=v1408>
<pre>
>><a onClick="window.open('getRecord.php?id=v1408',
                                'cpndb_record'); return false;" href="getRecord.php?id=v1408" target=_"blank">v1408</a> 516 Campylobacter jejuni subsp. jejuni NCTC11168  (555 nt)
 initn: 2766 init1: 2766 opt: 2766  Z-score: 91.8  bits: 26.8 E():   50
banded Smith-Waterman score: 2766; 99.8% identity (99.8% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b8436  GCAACGGTTTTAGCTCATGCAATTTTCAAAGAAGGTTTAAGAAATATCACAGCAGGTGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
v1408  GCAACGGTTTTAGCTCATGCAATTTTCAAAGAAGGTTTAAGAAATATCACAGCAGGTGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b8436  AATCCTATCGAGGTAAAACGCGGTATGGATAAAGCTTGCGAAGCTATAGTAGCAGAACTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
v1408  AATCCTATCGAGGTAAAACGCGGTATGGATAAAGCTTGCGAAGCTATAGTAGCAGAACTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b8436  AAAAAACTTTCTCGCGAAGTAAAAGATAAAAAAGAAATTGCACAAGTTGCTACAATCTCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
v1408  AAAAAACTTTCTCGCGAAGTAAAAGATAAAAAAGAAATTGCACAAGTTGCTACAATCTCA
              130       140       150       160       170       180

              190       200       210       220       230       240
b8436  GCCAACTCTGATGAAAAAATCGGAAATTTAATCGCTGATGCTATGGAAAAAGTGGGCAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
v1408  GCCAACTCTGATGAAAAAATCGGAAATTTAATCGCTGATGCTATGGAAAAAGTGGGCAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b8436  GATGGTGTTATCACTGTTGAGGAGGCAAAATCAATCAATGATGAATTAAATGTAGTTGAA
       :::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::
v1408  GATGGTGTTATCACTGTTGAAGAGGCAAAATCAATCAATGATGAATTAAATGTAGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b8436  GGTATGCAATTTGACAGAGGTTATTTAAGCCCTTATTTTATCACTAATGCAGAAAAAATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
v1408  GGTATGCAATTTGACAGAGGTTATTTAAGCCCTTATTTTATCACTAATGCAGAAAAAATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b8436  ACAGTAGAGCTTTCAAGCCCTTATATCCTGCTTTTTGATAAAAAAATTACAAATTTAAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
v1408  ACAGTAGAGCTTTCAAGCCCTTATATCCTGCTTTTTGATAAAAAAATTACAAATTTAAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b8436  GATTTATTACCGGTTTTAGAACAAATTCAAAAAACAGGCAAACCACTTTTAATTATCGCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
v1408  GATTTATTACCGGTTTTAGAACAAATTCAAAAAACAGGCAAACCACTTTTAATTATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b8436  GAAGATATTGAAGGTGAAGCGCTTGCAACTTTGGTTGTAAATAAACTTCGCGGTGTTCTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
v1408  GAAGATATTGAAGGTGAAGCGCTTGCAACTTTGGTTGTAAATAAACTTCGCGGTGTTCTT
              490       500       510       520       530       540

              550     
b8436  AATATTTCAGCAGTG
       :::::::::::::::
v1408  AATATTTCAGCAGTG
              550     

</pre>
<hr>
<A name=b1532>
<pre>
>><a onClick="window.open('getRecord.php?id=b1532',
                                'cpndb_record'); return false;" href="getRecord.php?id=b1532" target=_"blank">b1532</a> AF461534 Campylobacter jejuni Penner type strain  (555 nt)
 initn: 2766 init1: 2766 opt: 2766  Z-score: 91.8  bits: 26.8 E():   50
banded Smith-Waterman score: 2766; 99.8% identity (99.8% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b8436  GCAACGGTTTTAGCTCATGCAATTTTCAAAGAAGGTTTAAGAAATATCACAGCAGGTGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1532  GCAACGGTTTTAGCTCATGCAATTTTCAAAGAAGGTTTAAGAAATATCACAGCAGGTGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b8436  AATCCTATCGAGGTAAAACGCGGTATGGATAAAGCTTGCGAAGCTATAGTAGCAGAACTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1532  AATCCTATCGAGGTAAAACGCGGTATGGATAAAGCTTGCGAAGCTATAGTAGCAGAACTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b8436  AAAAAACTTTCTCGCGAAGTAAAAGATAAAAAAGAAATTGCACAAGTTGCTACAATCTCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1532  AAAAAACTTTCTCGCGAAGTAAAAGATAAAAAAGAAATTGCACAAGTTGCTACAATCTCA
              130       140       150       160       170       180

              190       200       210       220       230       240
b8436  GCCAACTCTGATGAAAAAATCGGAAATTTAATCGCTGATGCTATGGAAAAAGTGGGCAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1532  GCCAACTCTGATGAAAAAATCGGAAATTTAATCGCTGATGCTATGGAAAAAGTGGGCAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b8436  GATGGTGTTATCACTGTTGAGGAGGCAAAATCAATCAATGATGAATTAAATGTAGTTGAA
       :::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::
b1532  GATGGTGTTATCACTGTTGAAGAGGCAAAATCAATCAATGATGAATTAAATGTAGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b8436  GGTATGCAATTTGACAGAGGTTATTTAAGCCCTTATTTTATCACTAATGCAGAAAAAATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1532  GGTATGCAATTTGACAGAGGTTATTTAAGCCCTTATTTTATCACTAATGCAGAAAAAATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b8436  ACAGTAGAGCTTTCAAGCCCTTATATCCTGCTTTTTGATAAAAAAATTACAAATTTAAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1532  ACAGTAGAGCTTTCAAGCCCTTATATCCTGCTTTTTGATAAAAAAATTACAAATTTAAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b8436  GATTTATTACCGGTTTTAGAACAAATTCAAAAAACAGGCAAACCACTTTTAATTATCGCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1532  GATTTATTACCGGTTTTAGAACAAATTCAAAAAACAGGCAAACCACTTTTAATTATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b8436  GAAGATATTGAAGGTGAAGCGCTTGCAACTTTGGTTGTAAATAAACTTCGCGGTGTTCTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1532  GAAGATATTGAAGGTGAAGCGCTTGCAACTTTGGTTGTAAATAAACTTCGCGGTGTTCTT
              490       500       510       520       530       540

              550     
b8436  AATATTTCAGCAGTG
       :::::::::::::::
b1532  AATATTTCAGCAGTG
              550     

</pre>
<hr>
<A name=b7415>
<pre>
>><a onClick="window.open('getRecord.php?id=b7415',
                                'cpndb_record'); return false;" href="getRecord.php?id=b7415" target=_"blank">b7415</a> NC_003912 Campylobacter jejuni RM1221 ATCC BAA-1  (555 nt)
 initn: 2734 init1: 2734 opt: 2734  Z-score: 91.1  bits: 26.7 E():   54
banded Smith-Waterman score: 2734; 99.3% identity (99.3% similar) in 554 nt overlap (1-554:1-554)
<p>

               10        20        30        40        50        60
b8436  GCAACGGTTTTAGCTCATGCAATTTTCAAAGAAGGTTTAAGAAATATCACAGCAGGTGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7415  GCAACGGTTTTAGCTCATGCAATTTTCAAAGAAGGTTTAAGAAATATCACAGCAGGTGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b8436  AATCCTATCGAGGTAAAACGCGGTATGGATAAAGCTTGCGAAGCTATAGTAGCAGAACTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7415  AATCCTATCGAGGTAAAACGCGGTATGGATAAAGCTTGCGAAGCTATAGTAGCAGAACTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b8436  AAAAAACTTTCTCGCGAAGTAAAAGATAAAAAAGAAATTGCACAAGTTGCTACAATCTCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7415  AAAAAACTTTCTCGCGAAGTAAAAGATAAAAAAGAAATTGCACAAGTTGCTACAATCTCA
              130       140       150       160       170       180

              190       200       210       220       230       240
b8436  GCCAACTCTGATGAAAAAATCGGAAATTTAATCGCTGATGCTATGGAAAAAGTGGGCAAA
       ::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::
b7415  GCCAACTCTGATGAAAAAATCGGAAATTTAATCGCTGATGCCATGGAAAAAGTGGGCAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b8436  GATGGTGTTATCACTGTTGAGGAGGCAAAATCAATCAATGATGAATTAAATGTAGTTGAA
       :::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::
b7415  GATGGTGTTATCACTGTTGAAGAGGCAAAATCAATCAATGATGAATTAAATGTAGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b8436  GGTATGCAATTTGACAGAGGTTATTTAAGCCCTTATTTTATCACTAATGCAGAAAAAATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7415  GGTATGCAATTTGACAGAGGTTATTTAAGCCCTTATTTTATCACTAATGCAGAAAAAATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b8436  ACAGTAGAGCTTTCAAGCCCTTATATCCTGCTTTTTGATAAAAAAATTACAAATTTAAAA
       :::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::
b7415  ACAGTAGAGCTTTCAAGCCCTTATATCCTGCTTTTTGATAAAAAAATTGCAAATTTAAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b8436  GATTTATTACCGGTTTTAGAACAAATTCAAAAAACAGGCAAACCACTTTTAATTATCGCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7415  GATTTATTACCGGTTTTAGAACAAATTCAAAAAACAGGCAAACCACTTTTAATTATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b8436  GAAGATATTGAAGGTGAAGCGCTTGCAACTTTGGTTGTAAATAAACTTCGCGGTGTTCTT
       :::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::
b7415  GAAGATATTGAAGGCGAAGCGCTTGCAACTTTGGTTGTAAATAAACTTCGCGGTGTTCTT
              490       500       510       520       530       540

              550     
b8436  AATATTTCAGCAGTG
       :::::::::::::: 
b7415  AATATTTCAGCAGTA
              550     

</pre>
<hr>
<A name=b18192>
<pre>
>><a onClick="window.open('getRecord.php?id=b18192',
                                'cpndb_record'); return false;" href="getRecord.php?id=b18192" target=_"blank">b18192</a> CP001960 Campylobacter jejuni subsp. jejuni S3   (555 nt)
 initn: 2734 init1: 2734 opt: 2734  Z-score: 91.1  bits: 26.7 E():   54
banded Smith-Waterman score: 2734; 99.3% identity (99.3% similar) in 554 nt overlap (1-554:1-554)
<p>

               10        20        30        40        50        60
b8436  GCAACGGTTTTAGCTCATGCAATTTTCAAAGAAGGTTTAAGAAATATCACAGCAGGTGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b18192 GCAACGGTTTTAGCTCATGCAATTTTCAAAGAAGGTTTAAGAAATATCACAGCAGGTGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b8436  AATCCTATCGAGGTAAAACGCGGTATGGATAAAGCTTGCGAAGCTATAGTAGCAGAACTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b18192 AATCCTATCGAGGTAAAACGCGGTATGGATAAAGCTTGCGAAGCTATAGTAGCAGAACTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b8436  AAAAAACTTTCTCGCGAAGTAAAAGATAAAAAAGAAATTGCACAAGTTGCTACAATCTCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b18192 AAAAAACTTTCTCGCGAAGTAAAAGATAAAAAAGAAATTGCACAAGTTGCTACAATCTCA
              130       140       150       160       170       180

              190       200       210       220       230       240
b8436  GCCAACTCTGATGAAAAAATCGGAAATTTAATCGCTGATGCTATGGAAAAAGTGGGCAAA
       ::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::
b18192 GCCAACTCTGATGAAAAAATCGGAAATTTAATCGCTGATGCCATGGAAAAAGTGGGCAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b8436  GATGGTGTTATCACTGTTGAGGAGGCAAAATCAATCAATGATGAATTAAATGTAGTTGAA
       :::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::
b18192 GATGGTGTTATCACTGTTGAAGAGGCAAAATCAATCAATGATGAATTAAATGTAGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b8436  GGTATGCAATTTGACAGAGGTTATTTAAGCCCTTATTTTATCACTAATGCAGAAAAAATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b18192 GGTATGCAATTTGACAGAGGTTATTTAAGCCCTTATTTTATCACTAATGCAGAAAAAATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b8436  ACAGTAGAGCTTTCAAGCCCTTATATCCTGCTTTTTGATAAAAAAATTACAAATTTAAAA
       :::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::
b18192 ACAGTAGAGCTTTCAAGCCCTTATATCCTGCTTTTTGATAAAAAAATTGCAAATTTAAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b8436  GATTTATTACCGGTTTTAGAACAAATTCAAAAAACAGGCAAACCACTTTTAATTATCGCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b18192 GATTTATTACCGGTTTTAGAACAAATTCAAAAAACAGGCAAACCACTTTTAATTATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b8436  GAAGATATTGAAGGTGAAGCGCTTGCAACTTTGGTTGTAAATAAACTTCGCGGTGTTCTT
       :::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::
b18192 GAAGATATTGAAGGCGAAGCGCTTGCAACTTTGGTTGTAAATAAACTTCGCGGTGTTCTT
              490       500       510       520       530       540

              550     
b8436  AATATTTCAGCAGTG
       :::::::::::::: 
b18192 AATATTTCAGCAGTA
              550     

</pre>
<hr>
<p><pre>


555 residues in 1 query   sequences
10433008 residues in 18820 library sequences
 Scomplib [35.03]
 start: Mon Apr 29 05:20:13 2024 done: Mon Apr 29 05:20:15 2024
 Total Scan time:  1.380 Total Display time:  0.000

Function used was FASTA [version 35.03 Feb. 18, 2008]
</pre>