• Publications by the cpnDB consortium
  • Other publications citing cpnDB

    Publications by the cpnDB consortium

    Schellenberg JJ, Oh AY and Hill JE. 2017. Microbial profiling of cpn60 universal target sequences in artificial mixtures of vaginal bacteria sampled by nylon swabs or self-sampling devices under different storage conditions. Journal of Microbiological Methods, doi:10.1016/j.mimet.2017.03.003.

    Schellenberg JJ, Paramel Jayaprakash T, Withana Gamage N, Patterson MH, Vaneechoutte M and Hill JE. 2016. Gardnerella vaginalis subgroups defined by cpn60 sequencing and sialidase activity in isolates from Canada, Belgium and Kenya.PLoS ONE, 11(1):e0146510. DOI:10.1371/journal.pone.0146510.

    Katyal I, Chaban B and Hill JE. 2015. Comparative genomics of cpn60-defined Enterococcus hirae ecotypes and relationship of gene content differences to competetive fitness. Microbial Ecology, First online: 14 November 2015. DOI:10.1007/s00248-015-0708-2.

    Albert AYK, Chaban B, Wagner EC, Schellenberg JJ, Links MG, van Schalkwyk J, Reid G, Hemmingsen S, Hill JE and Money DM. 2015. A study of the vaginal microbiome in healthy Canadian women utilizing cpn60-based molecular profiling reveals distinct Gardnerella subgroup community state types. PLoS One, 10(8): e0135620. DOI:10.1371/journal.pone.0135620.

    Dumonceaux TJ, Green M, Hammond C, Perez E, Olivier C. 2014. Molecular diagnostic tools for detection and differentiation of phytoplasmas based on chaperonin-60 reveal differences in host plant infection patterns. PLoS One, 9(12):e116039. DOI: 10.1371/journal.pone.0116039.

    Costa MO, Chaban B, Harding JCS and Hill JE. 2014. Characterization of the fecal microbiota of pigs before and after inoculation with "Brachyspira hampsonii". PLoS One, 9(8):e106399. DOI: 10.1371/journal.pone.0106399.

    Chaban B, Links MG, Paramel Jayaprakash T, Wagner EC, Bourque DK, Lohn Z, Albert AYK, van Schalkwyk J, Reid G, Hemmingsen SM, Hill JE and Money DM. 2014 . Characterization of the vaginal microbiota of healthy Canadian women through the menstrual cycle. Microbiome, 2, 23. DOI: 10.1186/2049-2618-2-23.

    Town JR, Links MG, Fonstad TA and Dumonceaux TJ. 2014. Molecular characterization of anaerobic digester microbial communities identifies microorganisms that correlate to reactor performance. Bioresource Technology, 151:249-257. Abstract.

    Links MG, Demeke T, Grafenhan T, Hill JE and Dumonceaux TJ. 2014 . Simultaneous profiling of seed-associated bacteria and fungi reveals antagonistic interactions between microorganisms within a shared epiphytic microbiome on Triticum and Brassica seeds. New Phytologist, 202(2):542-553. Abstract.

    Rubin JE, Harms NJ, Fernando C, Soos C, Detmer SE, Harding JCS and Hill JE. 2013 . Isolation and characterization of Brachyspira spp. including "Brachyspira hampsonii" from lesser snow geese (Chen caerulescens caerulescens) in the Canadian arctic. Microbial Ecology, 66(4):813-822. Abstract.

    Links MG, Chaban B, Hemmingsen SM, Muirhead K and Hill JE. 2013 . mPUMA: a computational approach to microbiota analysis by de novo assembly of OTUs based on protein-coding barcode sequences. Microbiome, 1:23. DOI:10.1186/2049-2618-1-23.

    Chaban B, Albert A, Links MG, Gardy J, Tang P, Hill JE. 2013 . Characterization of the upper respiratory tract microbiomes of patients with pandemic H1N1 influenza. PLoS One, 8(7): e69559.

    Pratt DL, Dumonceaux T, Links MG, Fonstad TA. 2012 . Influence of mass burial of animal carcasses on the types and quantities of microorganisms within a burial site. American Society of Agricultural and Biological Engineers, 55: 2195-2212. Abstract.

    Links MG, Dumonceaux T, Hemmingsen SM and Hill JE. 2012 . The chaperonin-60 universal target is a barcode for Bacteria that enables de novo assembly of metagenomic sequence data. PLoS One, 7(11):e49755. DOI:10.1371/journal.pone.0049755.

    Paramel Jayaprakash T, Schellenberg JJ and Hill JE. 2012 . Resolution and characterization of distinct subgroups of Gardnerella vaginalis in the vaginal microbiota. PLoS One, 7(8): e430095. DOI: 10.1371/journal.pone.0043009.

    Desai AR, Links MG, Collins SA, Mansfield G, Drew MD, Van Kessel AG and Hill JE. 2012 . Effects of plant-based diets on the distal gut microbiome of rainbow trout (Oncorhynchus mykiss). Aquaculture, 350-353:134-142.

    Chaban B, Links MG and Hill JE. 2012 . A molecular enrichment strategy based on cpn60 for detection of epsilon-proteobacteria in the dog fecal microbiome. Microbial Ecology, 63(2):348-357. Abstract.

    Dumonceaux TJ, Town JR, Hill JE, Chaban B and Hemmingsen SM. 2011 . Multiplex detection of bacteria in complex clinical and environmental samples using oligonucleotide-coupled fluorescent microspheres. Journal of Visualized Experiments, e3344. Abstract.

    Chaban B and Hill JE. 2011 . A "universal" type II chaperonin PCR detection system for the investigation of archaea in complex microbial communities. The ISME Journal, 6:430-439 Abstract.

    Schellenberg JJ, Links MG, Hill JE, Dumonceaux TJ, Kimani J, Jaoko W, Wachihi C, Mungai JN, Peters GA, Tyler S, Graham M, Severini A, Fowke KR, Ball TB and Plummer FA. 2011 . Molecular definition of vaginal microbiota in East African commercial sex workers. Applied and Environmental Microbiology, 77(12):4066-4074. Abstract.

    Schellenberg J, Links MG, Hill JE, Hemmingsen SM and Dumonceaux TJ. 2011 . Pyrosequencing of chaperonin-60 (cpn60) amplicons as a means of determining microbial community composition. Methods in Molecular Biology, 733:143-158. Abstract.

    Verbeke TJ, Sparling R, Hill JE, Links MG, Levin D and Dumonceaux TJ. 2011 . Predicting relatedness of bacterial genomes using the chaperonin-60 universal target (cpn60 UT): application to Thermoanaerobacter species. Systematic and Applied Microbiology, 34:171-179. Abstract.

    Mansfield GS, Desai AR, Nilson SA, Van Kessel AG, Drew MD and Hill JE. 2010 . Characterization of rainbow trout (Oncorhynchus mykiss) intestinal microbiota and inflammatory marker gene expression in a recirculating aquaculture system. Aquaculture, 307:95-104. Abstract.

    Sahin N, Gonzalez JM, Iizuka T and Hill JE. 2010 . Characterization of two aerobic ultramicrobacteria isolated from urban soil and description of Oxalicibacterium solurbis sp. nov. FEMS Microbiology Letters, 307(1):25-29. Abstract.

    Chaban, B, Ngeleka M and Hill JE. 2010 . Detection and quantification of 14 Campylobacter species in pet dogs reveals an increase in species richness in feces of diarrheic animals. BMC Microbiology, 10:73. Abstract.

    Vermette CJ, Russell AH, Desai AR, and Hill JE. 2010 . Resolution of phenotypically distinct strains of Enterococcus spp. in a complex microbial community using cpn60 universal target sequencing. Microbial Ecology, 59:14-24. Abstract.

    Chaban B, Himsworth CG, Musil KM and Hill JE. 2009 . Development of cpn60-based real-time quantitative PCR assays for the detection of 14 Campylobacter species and application to screening canine fecal samples. Applied and Environmental Microbiology, 75 (10):3055-3061. Abstract.

    Schellenberg J, Links MG, Hill JE, Dumonceaux TJ, Peters GA, Tyler S, Ball B, Severini A and Plummer FA. 2009 . Pyrosequencing of the chaperonin-60 (cpn60) universal target as a tool for determining the composition of microbial communities. Applied and Environmental Microbiology, 75(9):2888-2898. Abstract.

    Desai, A.R., Musil, K.M., Carr, A.P. and Hill, J.E. 2009 . Characterization and quantification of feline fecal microbiota using cpn60 sequence-based methods and investigation of animal-to-animal variation in microbial population structure. Veterinary Microbiology, 137:120-128. Abstract.

    Haakensen, M, Dobson, CM, Hill, JE and Ziola, B. 2008 . Reclassification of Pediococcus dextrinicus (Coster and White 1964) Back 1978 (Approved Lists 1980) as Lactobacillus dextrinicus comb. nov. International Journal of Systematic and Evolutionary Microbiology, 59(Pt3):615-621. Abstract.

    Haigh JC, Gerwing V, Erdenebaatar J and Hill JE. 2008 . A novel clinical syndrome and detection of Anaplasma ovis in Mongolian reindeer (Rangifer tarandus). Journal of Wildlife Diseases, 44(3):569-577. Abstract.

    Hill JE, Penny SL, Crowell KG, Goh SH and Hemmingsen SM. 2007 . cpnDB. Nucleic Acids Research Molecular Biology Database Collection, On-line supplement to NAR 2007 January, 35(Database Issue), Database Summary Paper 923. Abstract.

    Dumonceaux TJ, Hill JE, Hemmingsen, SM and Van Kessel AG. 2006 . Characterization of intestinal microbiota and response to dietary virginiamycin supplementation in the broiler chicken. Applied and Environmental Microbiology, 72(4):2815-2823. Abstract.

    Dumonceaux TJ, Hill JE, Pelletier C, Paice MG, Van Kessel AG and Hemmingsen SM. 2006 . Molecular characterization of microbial communities in Canadian pulp and paper activated sludge and quantification of a novel Thiothrix eikelboomii-like bulking filament. Canadian Journal of Microbiology, 52(5), 494-500. Abstract.

    Hill JE, Paccagnella A, Law K, Melito PL, Woodward DL, Price DL, Ng L-K, Hemmingsen SM and Goh SH. 2006 . Identification of Campylobacter spp. and discrimination from Helicobacter and Arcobacter spp. by direct sequencing of PCR-amplified cpn60 sequences and comparison to cpnDB, a chaperonin reference sequence database. Journal of Medical Microbiology, 55:393-399. Abstract.

    Lukwinski AT, Hill JE, Khachatourians GG, Hemmingsen SM and Hegedus DD. 2006 . Biochemical and taxonomic characterization of bacteria associated with the Crucifer root maggot (Delia radicum). Canadian Journal of Microbiology, 52(3):197-208. Abstract.

    Hill JE, Town JR and Hemmingsen SM. 2006 . Improved template representation in cpn60 PCR product libraries generated from complex templates by application of a specific mixture of PCR primers. Environmental Microbiology, 8(4):741-746. Abstract.

    Masson L, Maynard C, Brousseau R, Goh SH, Hemmingsen SM, Hill JE, Paccagnella A, Oda R and Kimura N. 2006 . Identification of pathogenic Helicobacter species by chaperonin-60 differentiation on plastic DNA arrays. Genomics, 87(1):104-12. Abstract.

    Dumonceaux TJ, Hill JE, Briggs SA, Amoako KK, Hemmingsen SM and Van Kessel, AG. 2006 . Enumeration of specific bacterial populations in complex intestinal communities using quantitative PCR based on the chaperonin-60 target. Journal of Microbiological Methods, 64:46-62. Abstract.

    Hill JE, Gottschalk M, Brousseau R, Harel J, Hemmingsen SM and Goh SH. 2005 . Biochemical analysis, cpn60 and 16S rDNA sequence data indicate that Streptococcus suis serotypes 32 and 34, isolated from pigs, are Streptococcus orisratti. Veterinary Microbiology, 64:46-62. Abstract.

    Hill JE, Goh SH, Money DM, Doyle M, Li A, Crosby WL, Links M, Leung A, Chan D and Hemmingsen SM. 2005 . Characterization of vaginal microflora of healthy, non-pregnant women using chaperonin-60 sequence-based methods. American Journal of Obstetrics and Gynecology, 193(3 Pt 1):682-92. Abstract.

    Hill JE, Hemmingsen SM, Goldade B, Dumonceaux, T, Klassen, J, Zijlstra RT, Goh SH and Van Kessel AG. 2005 . Comparison of ileum microflora of pigs fed corn, wheat or barley-based diets using chaperonin-60 sequencing and quantitative PCR. Applied and Environmental Microbiology, 71(2):867-75 Abstract.

    Hill JE, Penny SL, Crowell KG, Goh SH and Hemmingsen SM. 2004 . cpnDB: a chaperonin sequence database. Genome Research, 14:1669-1675. Abstract.

    Dobson CM, Deneer H, Lee S, Hemmingsen S, Glaze S and Ziola B. 2002 . Phylogenetic analysis of the genus Pediococcus, including Pediococcus claussenii sp. nov., a novel lactic acid bacterium isolated from beer. International Journal of Systematic and Evolutionary Microbiologyh, 52:2003-2010. Abstract.

    Hill JE, Seipp RP, Betts M, Hawkins L, Van Kessel AG, Crosby WL and Hemmingsen SM. 2002 . Extensive profiling of a complex microbial community using high throughput sequencing. Applied and Environmental Microbiology, 68(6):3055-3066. Abstract.

    Brousseau R, Hill JE, Prefontaine G, Goh SH, Harel J and Hemmingsen SM. 2001 . Streptococcus suis serotypes characterized by analysis of cpn60 gene sequences. Applied and Environmental Microbiology, 67(10):4828-4833. Abstract.

    Hill JE and Hemmingsen SM. 2001 . Arabidopsis thaliana Type I and II Chaperonins. Cell Stress and Chaperones, 6(3):190-200. Abstract.

    Goh SH, Facklam RR, Chang M, Burns ECM, Tyrrell GJ, Hill JE, Chan D, He C, Rahim T, Shaw C, and Hemmingsen SM. 2000 . Identification of Enterococcus species and phenotypically similar Lactococcus and Vagococcus species by reverse checkerboard hybridization to Chaperonin 60 gene sequences. Journal of Clinical Microbiology, 38:3953-3959. Abstract.

    Goh SH, Driedger D, Gillett S, Low DE, Hemmingsen SM, Amos M, Chan D, Lovgren M, Willey BM, Shaw C, and Smith JA. 1998 . Streptococcus iniae, a human and animal pathogen:specific identification by the chaperonin 60 gene identification method. Journal of Clinical Microbiology, 36(7):2164-2166. Abstract.

    Goh SH, Santucci Z, Kloos WE, Faltyn M, George CG, Driedger D, and Hemmingsen SM. 1997 . Identification of Staphylococcus species and subspecies by the chaperonin 60 gene identification method and reverse checkerboard hybridization. Journal of Clinical Microbiology,

    Goh SH, Potter S, Wood JO, Hemmingsen SM, Reynolds RP, and Chow AW. 1996 . HSP60 gene sequences as universal targets for microbial species identification: studies with coagulase-negative staphylococci. Journal of Clinical Microbiology, 34(4):818-823. Abstract.

    Other publications citing cpnDB

    Nur Athirah Y, Abu Bakar FD, Illias RM, Mahadi NM, Murad AMA. 2015 . In silico characterisation of the Glaciozyma antarctica genome: Mining the molecular chaperones. Malaysian Applied Biology, 44(1):161-165. Abstract.

    Yeo SJ, Liu DX, Park H. 2015 . Potential interaction of Plasmodium falciparum Hsp60 and calpain. Korean Journal of Parasitology, 53(6):665-673. Abstract.

    Holman DB, Chenier MR. 2015 . Antimicrobial use in swine production and its effect on the swine gut microbiota and antimicrobial resistance. Canadian Journal of Microbiology, 61(11): 785-798. Abstract.

    Thomas V, Clark J, Dore J. 2015 . Fecal microbiota analysis: an overview of sample collection methods and sequencing strategies. Future Microbiology, 10(9):1485-1504. Abstract.

    Garcia-Mazcorro JF, Garza-Gonzalez E, Marroquin-Cardona AG, Tamayo JL. 2015 . Characterization, influence and manipulation of the gastrointestinal microbiota in health and disease. Gastroenterologia y Hepatologia, 38(7):445-466. Abstract.

    Singh MK, Reddy PVJ, Sreedhar AS and Tiwari PK. 2015 . Molecular characterization and expression analysis of hsp60 gene homologue of sheep blowfly, Lucilia cuprina. Journal of Thermal Biology, 52:24-37. Abstract.

    Tracz DM, Gilmour MW, Mabon P, Beniac DR, Hoang L, Kibsey P, Van Domselaar G, Tabor H, Westmacott GR, Corbett CR, Bernard KA. 2015 . Tatumella saanichensis sp. nov., isolated from a cystic fibrosis patient. International Journal of Systematic and Evolutionary Microbiology, 65(6):1959-66. Abstract.

    Hansen CM, Meixell BW, Van Hemert C, Hare RF and Hueffer K. 2015 . Microbial infections are associated with embryo mortality in arctic-nesting geese. Applied and Environmental Microbiology, 81(16):5583-92. Abstract.

    Klaring K, Just S, Lagkouvardos I, Hanske L, Haller D, Blaut M, Wenning M and Clavel T. 2015 . Murimonas intestini gen. nov., sp. nov., an acetate-producing bacterium of the family Lachnospiraceae isolated from the mouse gut. International Journal of Systematic and Evolutionary Microbiology, 65(Pt 3):870-878. Abstract.

    Guidone A, Parente E, Zotta T, Guinane CM, Rea MC, Stanton C, Ross RP and Ricciardi A. 2015 . Polymorphisms in stress response genes in Lactobacillus plantarum: implications for classification and heat stress response. Annals of Microbiology, 65(1):297-305. Abstract.

    De Maesschalck C, Van Immerseel F, Eeckhaut V, De Baere S, Cnockaert M, Croubels S, Haesebrouck F, Ducatelle R and Vandamme P. 2014 . Faecalicoccus acidiformans gen. nov., sp. nov., isolated from the chicken caecum, and reclassification of Streptococcus pleomorphus (Barnes et al. 1977), Eubacterium biforme (Eggerth 1935) and Eubacterium cylindroides (Cato et al. 1974) as Faecalicoccus pleomorphus comb. nov., Holdemanella biformis gen. nov., comb. nov. and Faecalitalea cylindroides gen. nov., comb. nov., respectively, within the family Erysipelotrichaceae. International Journal of Systematic and Evolutionary Microbiology, 64:3877-3884. Abstract.

    Chowdhury N, Kingston JJ, Whitaker WB, Carpenter MR, Cohen A, Boyd EF. 2014 . Fecal microbial diversity and putative function in captive western lowland gorillas (Gorilla gorilla gorilla), common chimpanzees (Pan troglodytes), Hamadryas baboons (Papio hamadryas) and binturongs (Arctictis binturong). Integrated Zoology, 9(5):557-569. Abstract.

    Chowdhury N, Kingston JJ, Whitaker WB, Carpenter MR, Cohen A, Boyd EF. 2014 . Sequence and expression divergence of an ancient duplication of the chaperonin groESEL operon in Vibrio species. Microbiology, 160(Pt 9):1953-63. Abstract.

    Bisanz JE, Macklaim JM, Gloor GB, Reid G. 2014 . Bacterial metatranscriptome analysis of a probiotic yogurt using an RNA-Seq approach. International Dairy Journal, 39(2):284-292. Abstract.

    Munir RI, Schellenberg J, Henrissat B, Verbeke TJ, Sparling R, Levin DB. 2014 . Comparative analysis of carbohydrate active enzymes in Clostridium termitidis CT1112 reveals complex carbohydrate degradation ability. PLoS One, 9(8): e104260. Abstract.

    Mattarelli P, Holzapfel W, Franz CM, Endo A, Felis GE, Hammes W, Pot B, Dicks L, Dellaglio F. 2014 . Recommended minimal standards for description of new taxa of the genera Bifidobacterium , Lactobacillus and related genera. International Journal of Systematic and Evolutionary Microbiology, 64(Pt 4):1434-1451. Abstract.

    Di Bella JM, Bao Y, Gloor GB, Burton JP, Reid G. 2013 . High throughput sequencing methods and analysis for microbiome research. Journal of Microbiological Methods, 95(3):401-414. Abstract.

    Baffoni L, Strahsburger E, Gaggia F, Di Giola D, Modesto M, Mattarelli P, Biavati B. 2013 . Identification of species belonging to the Bifidobacterium genus by PCR-RFLP analysis of a hsp60 gene fragment. BMC Microbiology, 13(1):149. Abstract.

    Nagarajan K, Loh K, Swarup S. 2013 . Bioinformatics and molecular biology for the quantification of closely related bacteria. Applied Microbiology and Biotechnology, 97(14):6489-6502. Abstract.

    Slezak K, Hanske L, Loh G, Blaut M. 2013 . Increased bacterial putrescine has no impact on gut morphology and physiology in gnotobiotic adolescent mice. Beneficial Microbes, 4(3):253-266. Abstract.

    Cotta MA, Whitehead TR, Falsen E, Moore E, Lawson PA. 2013 . Two novel species Enterococcus lemanii sp. nov. and Enterococcus eurekensis sp. nov., isolated from a swine-manure storage pit. Antonie van Leeuwenhoek, 103(1):89-98. Abstract.

    Moukoumi J, Hynes RK, Dumonceaux TJ, Town J, Belanger N. 2013 . Characterization and genus identification of rhizobial symbionts from Caragana arborescens in western Canada. Canadian Journal of Microbiology, 59 (6):399-406. Abstract.

    Macklaim JM, Fernandes AD, Di Bella JM, Hammond J, Reid G, Gloor GB. 2013 . Comparative meta-RNA-seq of the vaginal microbiota and differential expression by Lactobacillus iners in health and dysbiosis. Microbiome, 1:12. Open Access.

    Bondici VF, Lawrence JR, Khan NH, Hill JE, Yergeau E, Wolfaardt GM, Warner J, Korber DR. 2013 . Microbial communities in low permeability, high pH uranium mine tailings: characterization and potential effects. Journal of Applied Microbiology, 114: 1671-1686. Abstract.

    Tani A, Sahin N, Kimbara K. 2012 . Methylobacterium gnaphalii sp. nov., isolated from leaves of Gnaphalium spicatum. International Journal of Systematic and Evolutionary Microbiology, 62(11):2602-2607. Abstract.

    Gong J, Yang CB. 2012 . Advances in the methods for studying gut microbiota and their relevance to the research of dietary fiber functions. Food Research International, 48(2):916-929. Abstract.

    Ricciardi A, Parente E, Guidone A, Ianniello, RG, Zotta T, Abu Sayem SM, Varcamonti M. 2012 . Genotypic diversity of stress response in Lactobacillus plantarum, Lactobacillus paraplantarum and Lactobacillus pentosus. International Journal of Food Microbiology, 157(2):278-285. Abstract.

    R Kumar R, N S N, S P A, Sinha D, Veedin Rajan VB, Esthaki VK, D'Silva P. 2012 . HSPIR: a manually annotated heat shock protein information resource. Bioinformatics, 28(21):2853-5. Abstract.

    Banihashemi A, Van Dyke MI, Huck PM. 2012 . Long-amplicon propidium monoazide-PCR enumeration assay to detect viable Campylobacter and Salmonella Journal of Applied Microbiology, 113(4):863-873. Abstract.

    Tani A, Sahin N, Kimbara K. 2012 . Methylobacterium oxalidis sp nov., isolated from leaves of Oxalis corniculata. International Journal of Systematic and Evolutionary Microbiology, 62:1647-1652. Abstract

    Sharma PK, Fu J, Cicek N, Sparling R, Levin DB. 2012 . Kinetics of medium-chain-length polyhydroyalkanoate production by a novel isolate of Pseudomonas putida LS46. Canadian Journal of Microbiology, 58(8):982-989. Abstract

    Hijazin M, Alber J, Lammler C, Hassan AA, Timke M, Kostrzewa M, Prenger-Berninghoff E, Zschock M. 2012 . Further characteristics of Actinomyces weissii, a novel species isolated from the oral cavity of dogs. Berliner und Muenchener Tieraerztliche Wochenschrift, 125 (7-8):332-336.

    Schellenberg JJ, Dumonceaux TJ, Hill JE, Kimani J, Jaoko W, Wachihi C, Mungai JN, Lane M, Fowke KR, Ball TB and Plummer FA. 2012 . Selection, phenotyping and identification of acid and hydrogen peroxide producing bacteria from vaginal samples of Canadian and East African women. PLoS One, 7(7):e41217. doi:10.1371/journal.pone.0041217

    Fettweis JM, Serrano MG, Girerd PH, Jefferson KK, Buck GA. 2012 . A new era of the vaginal microbiome: advances using next-generation sequencing. Chemistry & Biodiversity, 9(5):965-976. Abstract

    Junick J, Blaut M. 2012 . Quantification of human fecal Bifidobacterium species by quantitative real-time PCR targeting the groEL gene. Applied and Environmental Microbiology, Epub ahead of print. Abstract

    Saha R, Bestervelt LL, Donofrio RS. 2012 . Development and validation of a real-time TaqMan assay for the detection and enumeration of Pseudomonas fluorescens ATCC 13525 used as a challenge organism in testing of food equipments. Journal of Food Science 77(2):M150-155. Abstract

    Tonelli A, Sacchini F, Krasteva I, Zilli K, Scacchia M, Beaurepaire C, Nantel A, Pini A. 2012 . One test microbial diagnostic microarray for identification of Mycoplasma mycoides subsp. mycoides and other Mycoplasma species. Molecular Biotechnology 52(3):285-299. Abstract

    Masson L, Edge TA, Maynard C, Brousseau R, Fortin N, Greer CW, Trevors JT. 2011 . Molecular forensic approaches to the taxonomic assessment of bacteria in a commercial consortia. Journal of Forensic Research S2:001. doi:10.4172/2157-7145.S2-001. Abstract

    Clark KF, Greenwood SJ. 2011 . Aerococcus viridans expression of Cpn60 is associated with virulence during infection of the American lobster, Homarus americanus Milne Edwards. Journal of Fish Diseases 34(11):831-843. Abstract

    Sarkar S, Singh MD, Yadav R, Arunkumar KP, Pittman GW. 2011 . Heat shock proteins: Molecules with assorted functions. Frontiers in Biology 6(4):312-327. Abstract

    Willing B, Jansson JK. 2011 . The gut microbiota: ecology and function. In: Sadowsky, MJ, Whitman, RL (eds.) The Fecal Bacteria. ASM Press, Washington, DC, pp. 39-65.

    Sepehri S, Khafipour E, Bernstein CN, Coombes BK, Pilar AV, Karmali M, Ziebell K, Krause DO. 2011 .Characterization of Escherichia coli isolated from gut biopsies of newly diagnosed patients with inflammatory bowel disease. Inflammatory Bowel Diseases 17(7):1451-1463. Abstract

    Ramachandran U, Wrana N, Cicek N, Sparling R and Levin DB. 2011 . Isolation and characterization of a hydrogen- and ethanol-producing Clostridium sp. strain URNW. Canadian Journal of Microbiology 57(3): 236-243. Abstract

    Larsen N, Vogensen FK, Gobel R, Michaelsen KF, Abu Al-Soud W, Sorensen SJ, Hansen LH and Jakobsen M. 2011 . Predominant genera of fecal microbiota in children with atopic dermatitis are not altered by intake of probiotic bacteria Lactobacillus acidophilus NCFM and Bifidobacterium animalis subsp. lactis Bi-07. FEMS Microbiology Ecology 75(3):482-96. Abstract

    Hung WC, Tseng SP, Chen HJ, Tsai JC, Chang CH, Lee TF, Hsueh PR and Teng LJ. 2010 . Use of groESL as a target for identification of Abiotrophia, Granulicatella, and Gemella species. Journal of Clinical Microbiology 48(10):3532-3538. Abstract

    Feng J, Hwang R, Chang KF, Hwang SF, Strelkov SE, Gossen BD, Conner RL, Turnbull GD. 2010 . Genetic variation in Fusarium avenaceum causing root rot on field pea. Plant Pathology 59(5):845-852. Abstract

    Feng J, Hwang R, Chang KF, Hwang SF, Strelkov SE, Gossen BD, Zhou Q. 2010 . An inexpensive method for extraction of genomic DNA from fungal mycelia. Canadian Journal of Plant Pathology 32(3)396-401. Abstract

    Stuart TL, Sandhu J, Stirling R, Corder J, Ellis A, Misa P, Goh S, Wong B, Martiquet P, Hoang L, Galanis E. 2010 . Campylobacteriosis outbreak associated with ingestion of mud during a mountain bike race. Epidemiology and Infection 138(12):1695-1703. Abstract

    Yamabe K, Maeda H, Kokeguchi S, Soga Y, Meguro M, Naruishi K, Asakawa S, Takashiba S. 2010 . Antigenic group II chaperonin in Methanobrevibacter oralis may cross-react with human chaperonin CCT. Molecular Oral Microbiology 25(2):112-22. Abstract

    Sakamoto M, Suzuki N and Benno Y. 2010 . hsp60 and 16S rRNA gene sequence relationships among species of the genus Bacteroides with the finding that Bacteroides suis and Bacteroides tectus are heterotypic synonyms of Bacteroides pyogenes. International Journal of Systematic and Evolutionary Microbiology 60(Pt 12):2984-90. Abstract

    Sakamoto M and Ohkuma M. 2010 . Usefulness of the hsp60 gene for the identification and classification of Gram-negative anaerobic rods. Journal of Medical Microbiology 59:1293-1302. Abstract

    Douville M, Gagne F, Zhu B, Fortier M, and Fournier M. 2010 . Characterization of commercial microbial products by polymorphic DNA markers and enzymatic activity diversity: Occurrence and potential effects on freshwater mussels exposed to municipal effluents. Research Journal of Biotechnology. 5:31-48

    Sakamoto M, Suzuki N, and Okamoto M. 2010 . Prevotella aurantiaca sp. nov., isolated from the human oral cavity International Journal of Systematic and Evolutionary Microbiology 60:500-503. Abstract

    Debruyne L, Houf K, Douidah L, De Smet S, Vandamme P. 2010 . Reassessment of the taxonomy of Arcobacter cryaerophilus. Systematic and Applied Microbiology 33, 7-14. Abstract

    Hopkins KL, Peters TM, Lawson AJ, Owen RJ. 2009 . Rapid identification of Salmonella enterica subsp. arizonae and S. enterica subsp. diarizonae by real-time polymerase chain reaction. Diagnostic Microbiology and Infectious Disease 64 (4):452-454. Abstract

    Malik G, Hoehler D, Rademacher M, Drew MD, Van Kessel AG. 2009 . Apparent absorption of methionine and 2-hydroxy-4-methylthiobutanoic acid from gastrointestinal tract of conventional and gnotobiotic pigs. Animal 3:1378-1386. Abstract

    Henderson B. and Henderson S. 2009 . Unfolding the relationship between secreted molecular chaperones and macrophage activation states. Cell Stress Chaperones 14:329-341 Abstract

    Minana-Galbis, D., Urbizu-Serrano, A., Farfan, M., Fuste, M.C. and Loren, J.G. 2009 . Phylogenetic analysis and identification of Aeromonas species based on sequencing of the cpn60 universal target. International Journal of Systematic and Evolutionary Microbiology, 59:1976-1983. Abstract

    Poltronieri P, D'Urso OF, Blaiotta G and Morea M. 2008 . DNA arrays and membrane hybridization methods for screening of six Lactobacillus species common in food products. Food Analytical Methods 1(3):171-180

    Claesson MJ, van Sinderen D, O'Toole PW. 2008 . Lactobacillus phylogenomics - towards a reclassification of the genus. Int J Syst Evol Microbiol 58(Pt 12):2945-54 Abstract

    Oliver KL,Hamelin RC, Hintz WE. 2008 . Effects of transgenic hybrid aspen overexpressing polyphenol oxidase on rhizosphere diversity. Applied and Environmental Microbiology 74(17):5340-5348. Abstract

    Bigotti MG and Clarke AR. 2008 . Chaperonins: The hunt for the Group II mechanism. Archives of Biochemistry and Biophysics 474(2):331-339. Abstract

    Blaiotta G, Fusco V, Ercolini D, Aponte M, Pepe O, Villani F. 2008 . Lactobacillus strain diversity based on partial hsp60 gene sequences and design of PCR-restriction fragment length polymorphism assays for species identification and differentiation. Applied and Environmental Microbiology 74:208-215. Abstract

    Oros-Sichler M, Costa, R, Heuer, H, Smalla, K. 2007 . Molecular fingerprinting techniques to analyze soil microbial communities,pp 355-386. In Elsas, JD, Jansson, JK, Trevors, JT (Eds), Modern Soil Microbiology CRC Press.

    Okamoto M, Benno Y, Leung KP, Maeda N. 2007 . Metascardovia criceti gen. nov., sp. nov. from hamster dental plaque. Microbiology and Immunology 51(8):747-754. Abstract

    Bigotti, M. G., A. R. Clarke, and S. G. Burston. 2006 . The Hsp60 chaperonins from prokaryotes and eukaryotes, pp. 251-283. In M. Makarow and I. Braakman (ed.), Chaperones. Springer-Verlag, Heidelberg.

    Dmitriev A, Bhide M and Mikula I. 2006 . cpn60 gene based multiplex- PCR assay for simultaneous identification of streptococcal species. Acta Veterinaria Brno 75: 35-240 Abstract

    Zauner S, Lockhart P,Stoebe-Maier B, Gilson P, McFadden GI, and Maier UG. 2006 . Differential gene transfers and gene duplications in primary and secondary endosymbioses. BMC Evolutionary Biology 6:38. Abstract

    Carlier JP, Bonne I, and Bedora-Faure M. 2006 . Isolation from canned foods of a novel Thermoanaerobacter species phylogenetically related to Thermoanaerobacter mathranii (Larsen 1997): Emendation of the species description and proposal of Thermoanaerobacter mathranii subsp. Alimentarius subsp. nov. Anaerobe 12:153-159. Abstract

    Grzymski JJ, Carter BJ, Delong EF, Feldman RA, Ghadiri A, and Murray AE. 2006 . Comparative genomics of DNA fragments from six antarctic marine planktonic bacteria. Applied and Environmental Microbiology 72: 1532-1541. Abstract

    Harayama S and Kasai H. 2006 . Bacterial phylogeny reconstruction from molecular sequences, pp. 105-140. In Stackebrandt, E. (Ed.), Molecular Identification, Systematics, and Population Structure of Prokaryotes. Springer, New York.

    Neufeld JD and Mohn WH. 2006 . Assessment of microbial phylogenetic diversity based on environmental nucleic acids, pp. 219-260. In Stackebrandt, E. (Ed.), Molecular Identification, Systematics, and Population Structure of Prokaryotes. Springer, New York.

    Maynard C, Berthiaume F, Lemarchand K, Harel J, Payment P, Bayardelle P, Masson L, and Brousseau R. 2005 . Waterborne pathogen detection by use of oligonucleotide-based microarrays. Applied and Environmental Microbiology 71:8548-8557. Abstract

    Reid, G. 2005 . Colonization of the vaginal and urethral mucosa, pp. 431-448. In Nataro, J.P., Cohen, P.S., Mobley, H.L.T., Weiser, J.W. (Eds.), Colonization of mucosal surfaces.ASM Press, Washington, D.C.

    Spiegelman D, Whissell G, and Greer CW. 2005 . A survey of the methods for the characterization of microbial consortia and communities. Canadian Journal of Microbiology 51:355-386. Abstract

    Graczyk, T. K. 2005 . Is Giardia a living fossil? Trends in Parasitology 21:104-7. Abstract

    Calvo E, Flores-Romero P, Lopez JA , and Navas A. 2005 . Identification of proteins expressing differences among isolates of Meloidogyne spp. (Nematoda: Meloidogynidae) by nano-liquid chromatography coupled to ion-trap mass spectrometry. Journal of Proteome Research 4:1017-1021. Abstract

    Updated 2017-03-13