RECORD DETAILS
Add Record To Cart - Printer-friendly version - Close Window| Chaperonin ID: | b32834 |
| Chaperonin Group: | I |
| Deposit Date: | 2018-09-22 |
| Type: | fie |
| Type strain?: | no |
| Genus: | Candidatus Phytoplasma |
| Species: | cocostanzaniae |
| Strain: | TagTall |
| Lineage: | root; cellular organisms; Bacteria; Terrabacteria group; Tenericutes; Mollicutes; Acholeplasmatales; Acholeplasmataceae; Candidatus Phytoplasma; 16SrIV (Coconut lethal yellows group) |
| Original ID: | - |
| CUTC ID: | - |
| Nucleotide Genbank Accession: | MH922781 |
| Peptide Genbank Accession: | - |
| Best FASTA Match: | b32835 Candidatus Phytoplasma palmae Sab4 (see fasta results) |
| Date of FASTA search: | 2024-04-29 |
| FASTA identity %: | 85.200 |
| Best BLASTP Match: | b34437 Candidatus Phytoplasma palmae Cocos nucifera phytoplasma (see blastp results) |
| Date of BLASTP search: | 2024-04-29 |
| BLASTP identity %: | 83.696 |
| Source: | other |
| Notes: | cpn60 UT IV-IC; 16SrIV-C. Host: coconut (Cocos nucifera). Country of origin: Tanzania. DNA extract from Brian Bahder, University of Florida |
| Full Nucleotide Sequence: | - |
| Full Peptide Sequence: | - |
|
Nucleotide UT Sequence: BLAST this sequence: cpnDB | |
GCAACTGTTTTAGCCCAATATATGATTCAAAAAGGTTTTAAATGTGTAAATTCTGGTTCA AAAGCTATTTTGATGAGAGAAGGAATTTTACAAGCTGCTCAAAAAGTTTCCCAAAAGCTT TTAGAAAAAACTAAACCTGTAGTTACTCAGGAAGATATCGAAAATATAGCTTCTATTTCA TCTGGTAGCAAAAATATAGGTAAAATTATAGCTTCAGCTATGGAAAAAGTTACTAAAAAA GGTGTTATTAGTGTTGATGAATCTAAAGGTTTTAAAACAGAATTAGAAGTCGTTAAGGGT ATGCAATATGATAAAGGTTATGTTTCGCCTCATTTTGTAACTAATAAAGAAAATATGTCT GTTGAAATGGAAAAATTATCTGTTTTAGTAACTGATCATAAAATTAGTAATATCCAAGAG ATACGTTCTATATTGGAAGAAATAGTTAAAACTTCTACTCCTTTGTTGATTATTGCTGAT TCAATAGAAACTGATATAATTAATACTCTTGTTTTTAATAAAATAAGTGGTGTTTTTAAC GTTGTTGCAACT |
|
Peptide UT Sequence: BLAST this sequence: cpnDB | |
ATVLAQYMIQKGFKCVNSGSKAILMREGILQAAQKVSQKLLEKTKPVVTQEDIENIASIS SGSKNIGKIIASAMEKVTKKGVISVDESKGFKTELEVVKGMQYDKGYVSPHFVTNKENMS VEMEKLSVLVTDHKISNIQEIRSILEEIVKTSTPLLIIADSIETDIINTLVFNKISGVFN VVAT |